Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G3024 Fragaria x ananassa HOM05D007884 ORTHO05D009968 3.4e-264 914.4 464 100.0
FvH4_5g33340 Fragaria vesca HOM05D007884 ORTHO05D009968 1.2e-245 852.8 504 87.5
FAN18G0070 Fragaria x ananassa HOM05D007884 ORTHO05D009968 1.2e-245 852.8 504 87.5
RcHm_v2.0_Chr7g0232061 Rosa chinensis HOM05D007884 ORTHO05D009968 6.8e-188 661.0 504 69.2
FAN08G1312 Fragaria x ananassa HOM05D007884 ORTHO05D009968 5.5e-129 465.3 305 83.0
Prupe.1G544500 Prunus persica HOM05D007884 ORTHO05D009968 2.2e-98 363.6 520 43.7
Cfa008093 Carpinus fangiana HOM05D007884 ORTHO05D009968 1.2e-70 271.6 523 34.8
QL09p002129 Quercus lobata HOM05D007884 ORTHO05D009968 2.0e-70 270.8 533 35.8
MD08G1213200 Malus domestica HOM05D007884 ORTHO05D009968 2.9e-61 240.4 499 35.7
Potri.019G075900 Populus trichocarpa HOM05D007884 ORTHO05D009968 6.2e-56 222.6 504 33.3
Haze_13924 Corylus avellana HOM05D007884 ORTHO05D009968 8.9e-55 218.8 392 36.0
Sed0007017 Sechium edule HOM05D007884 ORTHO05D009968 1.5e-49 201.4 484 32.4
CANSAT25G3642 Cannabis sativa HOM05D007884 ORTHO05D009968 7.3e-49 199.1 505 31.5
CiPaw.03G016000 Carya illinoinensis HOM05D007884 ORTHO05D009968 4.7e-48 196.4 389 33.9
Sabra19G0086300 Salix brachista HOM05D007884 ORTHO05D009968 4.4e-46 189.9 506 30.8
Thecc.08G176500 Theobroma cacao HOM05D007884 ORTHO05D009968 8.6e-42 175.6 509 30.6
CsaV3_4G033680 Cucumis sativus L. HOM05D007884 ORTHO05D009968 1.6e-40 171.4 411 31.1
ClCG10G005030 Citrullus lanatus HOM05D007884 ORTHO05D009968 3.6e-40 170.2 467 30.2
Cc11_g04640 Coffea canephora HOM05D007884 ORTHO05D009968 4.0e-39 166.8 352 31.5
PGR031G2984 Punica granatum HOM05D007884 ORTHO05D009968 5.2e-39 166.4 358 32.1
Lj2g0010779 Lotus japonicus HOM05D007884 ORTHO05D009968 9.9e-38 162.2 379 31.1
Duzib177G0356 Durio zibethinus HOM05D007884 ORTHO05D009968 5.4e-36 156.4 509 28.3
Sc26g0002320 Simmondsia chinensis HOM05D007884 ORTHO05D009968 2.1e-35 154.5 396 28.8
Hma1.2p1_0004F.1_g003780 Hydrangea macrophylla HOM05D007884 ORTHO05D009968 1.0e-34 152.1 511 29.2
Dinv09394 Davidia involucrata HOM05D007884 ORTHO05D009968 2.3e-34 151.0 391 30.2
TWI18G0215 Tripterygium wilfordii HOM05D007884 ORTHO05D009968 2.3e-34 151.0 291 35.1
MELO3C016698.2 Cucumis melo HOM05D007884 ORTHO05D009968 1.9e-33 147.9 331 30.8
Gorai.001G097200 Gossypium raimondii HOM05D007884 ORTHO05D009968 4.3e-33 146.7 383 29.2
TWI75G0081 Tripterygium wilfordii HOM05D007884 ORTHO05D009968 4.3e-33 146.7 524 28.2
Gohir.A07G085300 Gossypium hirsutum HOM05D007884 ORTHO05D009968 1.1e-31 142.1 507 27.0
Lj9P699T19 Lonicera japonica HOM05D007884 ORTHO05D009968 2.4e-31 141.0 381 28.6
Glyma.19G044700 Glycine max HOM05D007884 ORTHO05D009968 4.0e-31 140.2 379 30.1
COL.COLO4_22419 Corchorus olitorius HOM05D007884 ORTHO05D009968 5.2e-31 139.8 354 30.5
Nitab4.5_0006974g0020 Nicotiana tabacum HOM05D007884 ORTHO05D009968 5.2e-31 139.8 501 24.8
Ciclev10019950m.g Citrus clementina HOM05D007884 ORTHO05D009968 6.9e-31 139.4 382 29.1
Phvul.003G017800 Phaseolus vulgaris HOM05D007884 ORTHO05D009968 2.6e-30 137.5 379 28.8
Eucgr.F02657 Eucalyptus grandis HOM05D007884 ORTHO05D009968 5.8e-30 136.3 377 29.2
Actinidia29389 Actinidia chinensis HOM05D007884 ORTHO05D009968 9.9e-30 135.6 351 28.2
Aqoxy7G02021 Aquilegia oxysepala HOM05D007884 ORTHO05D009968 9.9e-30 135.6 379 28.2
Zm00001eb001440 Zea mays HOM05D007884 ORTHO05D009968 1.3e-29 135.2 315 31.1
DCAR_014075 Daucus carota HOM05D007884 ORTHO05D009968 1.7e-29 134.8 381 27.6
Gohir.D07G090700 Gossypium hirsutum HOM05D007884 ORTHO05D009968 2.2e-29 134.4 507 26.6
VMungo1309G1853 Vigna mungo HOM05D007884 ORTHO05D009968 5.4e-28 129.8 379 28.2
SGA_v2.0_scaffold118G32599 Striga asiatica HOM05D007884 ORTHO05D009968 9.3e-28 129.0 392 28.3
Migut.C01368 Erythranthe guttata HOM05D007884 ORTHO05D009968 2.1e-27 127.9 345 27.0
Medtr6g017035 Medicago truncatula HOM05D007884 ORTHO05D009968 7.8e-27 125.9 376 26.6
Psat1g062080 Pisum sativum HOM05D007884 ORTHO05D009968 7.8e-27 125.9 377 27.6
Os03g0119700 Oryza sativa ssp. japonica HOM05D007884 ORTHO05D009968 1.3e-26 125.2 367 27.5
TAR383G0946 Trochodendron aralioides HOM05D007884 ORTHO05D009968 5.1e-26 123.2 370 25.9
EL10Ac1g01640 Beta vulgaris HOM05D007884 ORTHO05D009968 1.1e-25 122.1 388 26.5
Cpa.g.sc21.77 Carica papaya HOM05D007884 ORTHO05D009968 1.5e-25 121.7 277 32.9
AUR62022398 Chenopodium quinoa HOM05D007884 ORTHO05D009968 1.9e-25 121.3 370 26.8
MSTRG.1590 Avicennia marina HOM05D007884 ORTHO05D009968 2.5e-25 120.9 372 26.1
CSS0033652 Camellia sinensis var. sinensis HOM05D007884 ORTHO05D009968 3.3e-25 120.6 387 25.8
CSS0035845 Camellia sinensis var. sinensis HOM05D007884 ORTHO05D009968 3.3e-25 120.6 387 25.8
Nitab4.5_0005550g0020 Nicotiana tabacum HOM05D007884 ORTHO05D009968 1.6e-24 118.2 383 26.4
PGSC0003DMG400013578 Solanum tuberosum HOM05D007884 ORTHO05D009968 2.8e-24 117.5 368 26.9
PSO242G0004 Papaver somniferum HOM05D007884 ORTHO05D009968 3.6e-24 117.1 383 26.1
Lalb_Chr02g0158331 Lupinus albus HOM05D007884 ORTHO05D009968 3.4e-22 110.5 380 25.5
CAN.G63.2 Capsicum annuum HOM05D007884 ORTHO05D009968 5.8e-22 109.8 368 25.5
Ca_26346_v3 Cicer arietinum L. HOM05D007884 ORTHO05D009968 3.8e-21 107.1 250 30.8
Oeu023202.1 Olea europaea HOM05D007884 ORTHO05D009968 6.4e-21 106.3 361 27.4
Sopen07g021970 Solanum pennellii HOM05D007884 ORTHO05D009968 1.9e-20 104.8 368 25.8
Nn4g26038 Nelumbo nucifera HOM05D007884 ORTHO05D009968 3.2e-20 104.0 375 24.0
Ah.05g168770 Amaranthus hybridus HOM05D007884 ORTHO05D009968 1.6e-19 101.7 360 25.0
Nn3g17503 Nelumbo nucifera HOM05D007884 ORTHO05D009968 1.6e-19 101.7 375 23.5
Lsat_1_v5_gn_4_133080 Lactuca sativa HOM05D007884 ORTHO05D009968 1.3e-18 98.6 206 31.6
HPP92_008446 Vanilla planifolia HOM05D007884 ORTHO05D009968 5.1e-18 96.7 380 23.9
HanXRQChr17g0559001 Helianthus annuus HOM05D007884 ORTHO05D009968 5.6e-17 93.2 378 25.4
HPP92_008463 Vanilla planifolia HOM05D007884 ORTHO05D009968 1.3e-16 92.0 346 23.7
Atru.chr13.2470 Acer truncatum HOM05D007884 ORTHO05D009968 1.6e-16 91.7 295 28.1
Manes.18G118701 Manihot esculenta HOM05D007884 ORTHO05D009968 2.8e-16 90.9 281 27.0
TPR.G21024 Trifolium pratense HOM05D007884 ORTHO05D009968 1.8e-15 88.2 205 30.2
MBI04_g00944_MAGBIO Magnolia biondii HOM05D007884 ORTHO05D009968 1.2e-14 85.5 202 29.2
AUR62043537 Chenopodium quinoa HOM05D007884 ORTHO05D009968 3.4e-14 84.0 289 23.9
CDE04G2395 Ceratophyllum demersum HOM05D007884 ORTHO05D009968 3.5e-11 73.9 265 26.4
ATR0716G085 Amborella trichopoda HOM05D007884 ORTHO05D009968 8.2e-08 62.8 158 27.2


User provided reference genes

Program Settings