Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G3018 Fragaria x ananassa HOM05D005270 ORTHO05D006239 9.7e-220 766.5 395 100.0
FvH4_5g00280 Fragaria vesca HOM05D005270 ORTHO05D006239 5.0e-216 754.2 395 98.2
FAN08G1405 Fragaria x ananassa HOM05D005270 ORTHO05D006239 7.2e-215 750.4 395 97.7
FAN18G1040 Fragaria x ananassa HOM05D005270 ORTHO05D006239 1.6e-214 749.2 395 97.7
FAN13G2928 Fragaria x ananassa HOM05D005270 ORTHO05D006239 1.8e-213 745.7 395 97.2
RcHm_v2.0_Chr7g0202331 Rosa chinensis HOM05D005270 ORTHO05D006239 1.4e-205 719.5 398 94.5
MD06G1067000 Malus domestica HOM05D005270 ORTHO05D006239 1.0e-192 676.8 398 87.7
Prupe.5G075500 Prunus persica HOM05D005270 ORTHO05D006239 2.3e-192 675.6 398 88.4
Atru.chr9.1379_Atru.chr9.1380 Acer truncatum HOM05D005270 ORTHO05D006239 2.8e-182 642.1 399 83.7
QL12p013868 Quercus lobata HOM05D005270 ORTHO05D006239 2.4e-178 629.0 401 81.8
CANSAT21G2027 Cannabis sativa HOM05D005270 ORTHO05D006239 9.2e-178 627.1 405 79.5
Ciclev10020501m.g Citrus clementina HOM05D005270 ORTHO05D006239 1.2e-177 626.7 401 81.3
Eucgr.D02030 Eucalyptus grandis HOM05D005270 ORTHO05D006239 4.6e-177 624.8 413 79.7
Potri.001G120400 Populus trichocarpa HOM05D005270 ORTHO05D006239 3.3e-175 618.6 405 79.8
Manes.01G076600 Manihot esculenta HOM05D005270 ORTHO05D006239 2.8e-174 615.5 404 79.0
Gohir.A03G010000 Gossypium hirsutum HOM05D005270 ORTHO05D006239 4.7e-174 614.8 403 79.4
Hma1.2p1_1414F.1_g281890 Hydrangea macrophylla HOM05D005270 ORTHO05D006239 4.7e-174 614.8 403 77.7
CiPaw.11G150400 Carya illinoinensis HOM05D005270 ORTHO05D006239 8.1e-174 614.0 403 79.4
Gorai.006G212700 Gossypium raimondii HOM05D005270 ORTHO05D006239 1.4e-173 613.2 403 78.9
ClCG01G003850 Citrullus lanatus HOM05D005270 ORTHO05D006239 1.8e-173 612.8 407 79.1
Sabra01G0092800 Salix brachista HOM05D005270 ORTHO05D006239 2.4e-173 612.5 405 79.5
Gohir.A09G195500 Gossypium hirsutum HOM05D005270 ORTHO05D006239 5.2e-173 611.3 403 78.4
Gohir.D09G190100 Gossypium hirsutum HOM05D005270 ORTHO05D006239 8.9e-173 610.5 403 78.7
Gohir.D03G160700 Gossypium hirsutum HOM05D005270 ORTHO05D006239 1.2e-172 610.1 403 78.9
TWI81G0718 Tripterygium wilfordii HOM05D005270 ORTHO05D006239 5.8e-172 607.8 402 79.4
PGR031G3926 Punica granatum HOM05D005270 ORTHO05D006239 7.6e-172 607.4 407 77.6
Thecc.03G257000 Theobroma cacao HOM05D005270 ORTHO05D006239 7.6e-172 607.4 406 78.3
Duzib068G0557 Durio zibethinus HOM05D005270 ORTHO05D006239 3.8e-171 605.1 403 78.9
CSS0023019 Camellia sinensis var. sinensis HOM05D005270 ORTHO05D006239 4.9e-171 604.7 403 76.9
CSS0046114 Camellia sinensis var. sinensis HOM05D005270 ORTHO05D006239 4.9e-171 604.7 403 76.9
MELO3C005559.2 Cucumis melo HOM05D005270 ORTHO05D006239 1.4e-170 603.2 411 77.4
GSVIVG01004774001 Vitis vinifera HOM05D005270 ORTHO05D006239 1.4e-170 603.2 402 78.1
Lj2A211T58 Lonicera japonica HOM05D005270 ORTHO05D006239 7.1e-170 600.9 404 76.2
Sed0019529 Sechium edule HOM05D005270 ORTHO05D006239 9.2e-170 600.5 407 77.6
Dinv21601 Davidia involucrata HOM05D005270 ORTHO05D006239 2.7e-169 599.0 402 75.1
Sc01g0009340 Simmondsia chinensis HOM05D005270 ORTHO05D006239 3.5e-169 598.6 396 76.8
GSVIVG01001274001 Vitis vinifera HOM05D005270 ORTHO05D006239 4.6e-169 598.2 402 77.6
Actinidia27450 Actinidia chinensis HOM05D005270 ORTHO05D006239 7.8e-169 597.4 403 76.4
CsaV3_5G003980 Cucumis sativus L. HOM05D005270 ORTHO05D006239 1.0e-168 597.0 411 76.4
Peaxi162Scf00002g00815 Petunia axillaris HOM05D005270 ORTHO05D006239 3.0e-168 595.5 402 75.1
Solyc08g079070.2 Solanum lycopersicum HOM05D005270 ORTHO05D006239 3.0e-168 595.5 403 75.9
PGSC0003DMG400004791 Solanum tuberosum HOM05D005270 ORTHO05D006239 8.7e-168 594.0 403 75.7
Lalb_Chr05g0225581 Lupinus albus HOM05D005270 ORTHO05D006239 1.1e-167 593.6 397 77.3
Sopen08g027530 Solanum pennellii HOM05D005270 ORTHO05D006239 1.5e-167 593.2 403 75.7
CAN.G1217.18 Capsicum annuum HOM05D000486 ORTHO05D000375 4.3e-167 591.7 401 75.3
arahy.Tifrunner.gnm1.ann1.9F7ELE Arachis hypogaea HOM05D005270 ORTHO05D006239 1.2e-166 590.1 403 75.9
Dinv39103 Davidia involucrata HOM05D000201 ORTHO05D001515 2.8e-166 589.0 391 77.7
Actinidia05188 Actinidia chinensis HOM05D005270 ORTHO05D006239 4.7e-166 588.2 402 75.1
Glyma.05G056400 Glycine max HOM05D005270 ORTHO05D006239 8.1e-166 587.4 404 75.0
arahy.Tifrunner.gnm1.ann1.VW53Z5 Arachis hypogaea HOM05D005270 ORTHO05D006239 2.4e-165 585.9 403 75.4
TAR629G2769 Trochodendron aralioides HOM05D005270 ORTHO05D006239 4.0e-165 585.1 376 79.3
Rhsim07G0104300 Rhododendron simsii HOM05D005270 ORTHO05D006239 5.2e-165 584.7 402 74.1
Cc08_g12920 Coffea canephora HOM05D005270 ORTHO05D006239 1.2e-164 583.6 394 75.6
Glyma.17G138600 Glycine max HOM05D005270 ORTHO05D006239 4.9e-163 578.2 403 74.9
Lj4g0020394 Lotus japonicus HOM05D005270 ORTHO05D006239 1.1e-162 577.0 400 75.2
Oeu038010.1 Olea europaea HOM05D005270 ORTHO05D006239 1.4e-162 576.6 403 73.2
SGA_v2.0_scaffold144G35994 Striga asiatica HOM05D005270 ORTHO05D003965 1.9e-162 576.2 401 72.6
PSO017G6911 Papaver somniferum HOM05D005270 ORTHO05D006239 3.2e-162 575.5 398 74.9
Migut.E01048 Erythranthe guttata HOM05D005270 ORTHO05D006239 5.4e-162 574.7 400 73.2
THA.LOC104809459 Tarenaya hassleriana HOM05D005270 ORTHO05D006239 7.1e-162 574.3 410 72.7
Psat4g070360 Pisum sativum HOM05D005270 ORTHO05D006239 1.2e-161 573.5 398 75.6
MSTRG.25537 Avicennia marina HOM05D005270 ORTHO05D006239 1.6e-161 573.2 403 72.5
Cpa.g.sc29.127 Carica papaya HOM05D005270 ORTHO05D006239 2.7e-161 572.4 511 63.6
CARHR012530 Cardamine hirsuta HOM05D005270 ORTHO05D006239 6.0e-161 571.2 412 72.6
Carub.0001s1190 Capsella rubella HOM05D005270 ORTHO05D006239 7.8e-161 570.9 412 72.3
Ca_25339_v3 Cicer arietinum L. HOM05D005270 ORTHO05D006239 1.3e-160 570.1 395 74.4
PSO170G6680 Papaver somniferum HOM05D005270 ORTHO05D006239 1.7e-160 569.7 406 73.9
MBI04_g37584_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D006239 3.0e-160 568.9 402 73.6
AL1G23510 Arabidopsis lyrata HOM05D005270 ORTHO05D006239 3.9e-160 568.5 412 71.8
Aqoxy7G00723 Aquilegia oxysepala HOM05D005270 ORTHO05D006239 5.1e-160 568.2 401 73.6
Aa31LG1G2400 Aethionema arabicum HOM05D005270 ORTHO05D006239 6.6e-160 567.8 411 71.5
Sp1g10840 Schrenkiella parvula HOM05D005270 ORTHO05D006239 1.5e-159 566.6 412 72.1
vmacro14106 Vaccinium macrocarpon HOM05D005270 ORTHO05D006239 1.5e-159 566.6 424 70.0
Medtr4g101620 Medicago truncatula HOM05D005270 ORTHO05D006239 5.6e-159 564.7 407 72.5
Thhalv10007790m.g Eutrema salsugineum HOM05D005270 ORTHO05D006239 9.6e-159 563.9 413 71.4
C05p11010 Brassica napus HOM05D005270 ORTHO05D006239 2.1e-158 562.8 413 71.7
SalBow1G0839 Salvia bowleyana HOM05D005270 ORTHO05D006239 3.6e-158 562.0 378 75.7
A06p09330 Brassica napus HOM05D005270 ORTHO05D006239 6.2e-158 561.2 413 71.7
BolC5t29844H Brassica oleracea HOM05D005270 ORTHO05D006239 6.2e-158 561.2 413 71.4
unitig_0.g1234 Utricularia gibba HOM05D005270 ORTHO05D006239 8.1e-158 560.8 404 71.0
BraA06t24120Z Brassica rapa HOM05D005270 ORTHO05D006239 3.1e-157 558.9 416 70.7
ATR1152G004 Amborella trichopoda HOM05D005270 ORTHO05D006239 1.5e-156 556.6 350 78.9
TPR.G37612 Trifolium pratense HOM05D005270 ORTHO05D006239 1.5e-156 556.6 357 79.8
HPP92_022434 Vanilla planifolia HOM05D005270 ORTHO05D006239 2.6e-156 555.8 402 71.6
AT1G12230 Arabidopsis thaliana HOM05D005270 ORTHO05D006239 3.4e-156 555.4 434 67.7
HanXRQChr03g0087851 Helianthus annuus HOM05D005270 ORTHO05D006239 2.2e-155 552.7 367 74.9
Lsat_1_v5_gn_6_90321 Lactuca sativa HOM05D005270 ORTHO05D006239 2.9e-155 552.4 368 75.3
Nitab4.5_0009175g0010 Nicotiana tabacum HOM05D005270 ORTHO05D006239 9.3e-154 547.4 413 70.5
CDE12G0422 Ceratophyllum demersum HOM05D005270 ORTHO05D006239 4.3e-151 538.5 396 70.5
ECA240G0014 Erigeron canadensis HOM05D000201 ORTHO05D006239 4.8e-150 535.0 406 68.2
Nitab4.5_0000993g0070 Nicotiana tabacum HOM05D005270 ORTHO05D006239 2.0e-148 529.6 403 69.7
Duzib205G1833 Durio zibethinus HOM05D005270 ORTHO05D006239 9.9e-148 527.3 407 70.3
AUR62007475 Chenopodium quinoa HOM05D005270 ORTHO05D006239 2.9e-147 525.8 402 71.6
EL10Ac5g13010 Beta vulgaris HOM05D005270 ORTHO05D006239 2.4e-146 522.7 407 69.3
DCAR_006814 Daucus carota HOM05D005270 ORTHO05D006239 6.7e-144 514.6 397 69.3
Phvul.003G218000 Phaseolus vulgaris HOM05D005270 ORTHO05D006239 8.2e-142 507.7 311 81.7
VMungo0251G3554 Vigna mungo HOM05D005270 ORTHO05D006239 1.2e-140 503.8 311 81.7
Zm00001eb172680 Zea mays HOM05D005270 ORTHO05D006239 1.2e-140 503.8 342 72.5
COL.COLO4_37215 Corchorus olitorius HOM05D005270 ORTHO05D006239 6.0e-137 491.5 289 85.1
AagrBONN_evm.TU.Sc2ySwM_369.586 Anthoceros agrestis HOM05D005270 ORTHO05D006239 7.4e-135 484.6 365 68.5
Pp3c15_6350 Physcomitrium patens HOM05D005270 ORTHO05D006239 8.2e-134 481.1 367 67.6
BcaC05g25195 Brassica carinata HOM05D005270 ORTHO05D006239 7.9e-129 464.5 373 66.2
SalBow1G5553 Salvia bowleyana HOM05D005270 ORTHO05D006239 9.4e-122 441.0 414 58.7
CBR_g37411 Chara braunii HOM05D005270 ORTHO05D006239 1.3e-107 394.0 344 57.6
Sed0011689 Sechium edule HOM05D005270 ORTHO05D006239 6.1e-81 305.4 245 69.4
Psat5g235160 Pisum sativum HOM05D005270 ORTHO05D006239 2.3e-80 303.5 262 63.7
Psat5g232960 Pisum sativum HOM05D005270 ORTHO05D006239 6.4e-78 295.4 262 61.8
Mapoly0029s0033 Marchantia polymorpha HOM05D005270 ORTHO05D006239 6.8e-72 275.4 219 63.0
Gorai.N027100 Gossypium raimondii HOM05D005270 ORTHO05D006239 2.9e-70 270.0 165 78.8
CDE04G1696 Ceratophyllum demersum HOM05D005270 ORTHO05D006239 4.9e-70 269.2 216 68.1
Os08g0154300 Oryza sativa ssp. japonica HOM05D005270 ORTHO05D006239 1.1e-64 251.5 229 60.7
Mapoly0029s0029 Marchantia polymorpha HOM05D005270 ORTHO05D006239 2.9e-62 243.4 204 57.8
Atru.chr9.1382 Acer truncatum HOM05D005270 ORTHO05D006239 1.2e-60 238.0 167 77.8
Haze_07851 Corylus avellana HOM05D005270 ORTHO05D006239 1.9e-58 230.7 265 52.5
DCAR_004923 Daucus carota HOM05D005270 ORTHO05D006239 4.6e-52 209.5 235 51.1
CDE04G2727 Ceratophyllum demersum HOM05D005270 ORTHO05D006239 7.6e-47 192.2 210 51.9
Atru.chr9.1383 Acer truncatum HOM05D005270 ORTHO05D006239 1.0e-43 181.8 115 79.1
FAN28G1011 Fragaria x ananassa HOM05D005270 ORTHO05D006239 3.9e-43 179.9 166 62.7
AUR62039933 Chenopodium quinoa HOM05D005270 ORTHO05D006239 8.7e-43 178.7 115 75.7
FAN11G3467 Fragaria x ananassa HOM05D005270 ORTHO05D006239 8.7e-43 178.7 166 62.0
SEGI_36758 Sequoiadendron giganteum HOM05D005270 ORTHO05D006239 1.9e-42 177.6 177 58.8
Cre14.g630847 Chlamydomonas reinhardtii HOM05D005270 ORTHO05D006239 2.1e-41 174.1 378 37.3
SEGI_05849 Sequoiadendron giganteum HOM05D005270 ORTHO05D006239 1.8e-40 171.0 100 82.0
SEGI_03700 Sequoiadendron giganteum HOM05D005270 ORTHO05D006239 8.4e-38 162.2 115 69.6
Gorai.003G169200 Gossypium raimondii HOM05D005270 ORTHO05D006239 1.9e-37 161.0 143 65.0
Cre01.g032650 Chlamydomonas reinhardtii HOM05D005270 ORTHO05D006239 2.4e-37 160.6 354 31.4
PRCOL_00004111 Prasinoderma coloniale HOM05D005270 ORTHO05D006239 4.3e-34 149.8 290 32.4
MCO13G140 Micromonas commoda HOM05D005270 ORTHO05D006239 4.0e-32 143.3 263 33.8
RcHm_v2.0_Chr6g0270571 Rosa chinensis HOM05D005270 ORTHO05D006239 2.5e-29 134.0 78 87.2
FAN04G2435 Fragaria x ananassa HOM05D005270 ORTHO05D006239 5.6e-26 122.9 60 100.0
RcHm_v2.0_Chr6g0254981 Rosa chinensis HOM05D005270 ORTHO05D006239 1.4e-24 118.2 66 89.4
PRCOL_00004269 Prasinoderma coloniale HOM05D005270 ORTHO05D006239 6.9e-24 115.9 261 31.4
FAN14G3934 Fragaria x ananassa HOM05D000617 ORTHO05D000478 6.5e-22 109.4 55 96.4
FAN26G1714 Fragaria x ananassa HOM05D004635 ORTHO05D005899 6.5e-22 109.4 53 100.0
FAN23G0587 Fragaria x ananassa HOM05D016072 ORTHO05D006239 1.9e-21 107.8 52 100.0
FAN26G2512 Fragaria x ananassa HOM05D005270 ORTHO05D006239 2.7e-20 104.0 52 98.1
BcaC07g38600 Brassica carinata HOM05D000238 ORTHO05D037998 1.8e-19 101.3 80 68.8
FAN10G1808 Fragaria x ananassa HOM05D016072 ORTHO05D006239 8.7e-19 99.0 48 100.0
FAN23G1777 Fragaria x ananassa HOM05D016072 ORTHO05D006239 8.7e-19 99.0 48 100.0
Ca_29061_v3 Cicer arietinum L. HOM05D001546 ORTHO05D002908 3.3e-18 97.1 217 29.5
CAN.G1488.1 Capsicum annuum HOM05D005270 ORTHO05D006239 7.4e-18 95.9 130 41.5
FAN26G1376 Fragaria x ananassa HOM05D005270 ORTHO05D006466 3.7e-17 93.6 51 96.1
GSVIVG01028518001 Vitis vinifera HOM05D005270 ORTHO05D006239 6.3e-17 92.8 49 85.7
MBI03_g13472_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D006239 8.2e-17 92.4 69 65.2
MBI14_g06401_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D006239 2.4e-16 90.9 53 83.0
CAN.G605.8 Capsicum annuum HOM05D005270 ORTHO05D006239 3.1e-16 90.5 51 78.4
MBI15_g47610_MAGBIO Magnolia biondii HOM05D001260 ORTHO05D004134 1.2e-15 88.6 50 86.0
BcaC07g41719 Brassica carinata HOM05D005270 ORTHO05D039702 1.5e-15 88.2 80 63.8
BolC8t52299H Brassica oleracea HOM05D005270 ORTHO05D039702 1.5e-15 88.2 80 63.8
FAN24G0448 Fragaria x ananassa HOM05D002561 ORTHO05D006466 5.9e-15 86.3 56 83.9
FAN24G1197 Fragaria x ananassa HOM05D002561 ORTHO05D006466 5.9e-15 86.3 56 83.9
FAN24G1576 Fragaria x ananassa HOM05D002561 ORTHO05D006466 5.9e-15 86.3 56 83.9
PRCOL_00005862 Prasinoderma coloniale HOM05D005270 ORTHO05D333221 5.9e-15 86.3 194 29.9
CSS0018551 Camellia sinensis var. sinensis HOM05D000691 ORTHO05D000378 1.3e-14 85.1 62 66.1
CAN.G1143.36 Capsicum annuum HOM05D001836 ORTHO05D001519 6.5e-14 82.8 85 54.1
MBI18_g46779_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D004199 5.1e-11 73.2 43 83.7
SalBow1G3426 Salvia bowleyana HOM05D005270 ORTHO05D006239 6.7e-11 72.8 55 60.0
FvH4_4g08600 Fragaria vesca HOM05D000107 ORTHO05D006466 3.3e-10 70.5 101 47.5
MBI16_g06311_MAGBIO Magnolia biondii HOM05D001260 ORTHO05D004134 1.3e-09 68.6 40 82.5
C08p47590 Brassica napus HOM05D000101 ORTHO05D000089 3.8e-06 57.0 75 46.7


User provided reference genes

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