Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G2946 Fragaria x ananassa HOM05D005223 ORTHO05D006449 0.0e+00 1942.5 1013 100.0
FAN18G3380 Fragaria x ananassa HOM05D005223 ORTHO05D006449 0.0e+00 1901.7 1013 97.9
FvH4_5g07490 Fragaria vesca HOM05D005223 ORTHO05D006449 0.0e+00 1897.9 1013 97.7
FAN13G2650 Fragaria x ananassa HOM05D005223 ORTHO05D006449 0.0e+00 1894.0 1018 97.3
RcHm_v2.0_Chr7g0191161 Rosa chinensis HOM05D005223 ORTHO05D006449 0.0e+00 1763.8 1017 91.1
Prupe.5G157000 Prunus persica HOM05D005223 ORTHO05D006449 0.0e+00 1535.0 1022 78.5
MD14G1163600 Malus domestica HOM05D005223 ORTHO05D006449 0.0e+00 1526.5 1023 77.9
Cfa018892 Carpinus fangiana HOM05D005223 ORTHO05D006449 0.0e+00 1377.1 1022 70.4
Haze_07276 Corylus avellana HOM05D005223 ORTHO05D006449 0.0e+00 1369.4 1020 69.9
QL10p005060 Quercus lobata HOM05D005223 ORTHO05D006449 0.0e+00 1359.0 1020 70.0
Dinv38469 Davidia involucrata HOM05D005223 ORTHO05D006449 0.0e+00 1345.5 1001 70.3
GSVIVG01007540001 Vitis vinifera HOM05D005223 ORTHO05D006449 0.0e+00 1336.2 1059 66.4
CANSAT80G2773 Cannabis sativa HOM05D005223 ORTHO05D006449 0.0e+00 1333.2 1025 67.3
Atru.chr9.1012 Acer truncatum HOM05D005223 ORTHO05D006449 0.0e+00 1326.2 1015 67.0
Thecc.03G122800 Theobroma cacao HOM05D005223 ORTHO05D006449 0.0e+00 1318.5 1017 68.5
TWI14G1297 Tripterygium wilfordii HOM05D005223 ORTHO05D006449 0.0e+00 1300.8 1015 66.6
Ciclev10018616m.g Citrus clementina HOM05D005223 ORTHO05D006449 0.0e+00 1285.8 1023 65.8
Manes.06G115300 Manihot esculenta HOM05D005223 ORTHO05D006449 0.0e+00 1284.6 1022 66.0
Gohir.A07G053500 Gossypium hirsutum HOM05D005223 ORTHO05D006449 0.0e+00 1275.0 1019 65.7
Gorai.001G061400 Gossypium raimondii HOM05D005223 ORTHO05D006449 0.0e+00 1269.2 1020 65.1
Potri.015G090700 Populus trichocarpa HOM05D005223 ORTHO05D006449 0.0e+00 1269.2 1025 65.7
CSS0037650 Camellia sinensis var. sinensis HOM05D005223 ORTHO05D006449 0.0e+00 1267.3 1020 65.6
Gohir.D07G057900 Gossypium hirsutum HOM05D005223 ORTHO05D006449 0.0e+00 1266.1 1019 65.1
TAR629G2346 Trochodendron aralioides HOM05D005223 ORTHO05D006449 0.0e+00 1255.0 1012 65.2
ClCG03G003490 Citrullus lanatus HOM05D005223 ORTHO05D006449 0.0e+00 1253.4 1019 63.7
Hma1.2p1_0123F.1_g058130 Hydrangea macrophylla HOM05D005223 ORTHO05D006449 0.0e+00 1251.5 1022 63.8
CsaV3_1G009290 Cucumis sativus L. HOM05D005223 ORTHO05D006449 0.0e+00 1245.7 1029 63.1
MELO3C002332.2 Cucumis melo HOM05D005223 ORTHO05D006449 0.0e+00 1241.9 1023 62.8
Sed0011232 Sechium edule HOM05D005223 ORTHO05D006449 0.0e+00 1239.9 1024 64.0
Phvul.009G168800 Phaseolus vulgaris HOM05D005223 ORTHO05D006449 0.0e+00 1237.2 1021 64.0
Lj1g0000662 Lotus japonicus HOM05D005223 ORTHO05D006449 0.0e+00 1230.3 1016 63.6
Ca_16089_v3 Cicer arietinum L. HOM05D005223 ORTHO05D006449 0.0e+00 1226.5 1013 62.4
Nn4g22461 Nelumbo nucifera HOM05D005223 ORTHO05D006449 0.0e+00 1218.4 1028 62.9
Sabra15G0112800 Salix brachista HOM05D005223 ORTHO05D000001 0.0e+00 1217.2 996 65.6
Glyma.04G193000 Glycine max HOM05D005223 ORTHO05D006449 0.0e+00 1216.4 1020 62.6
vmacro19239 Vaccinium macrocarpon HOM05D005223 ORTHO05D006449 0.0e+00 1215.7 1071 60.8
Rhsim08G0185000 Rhododendron simsii HOM05D005223 ORTHO05D006449 0.0e+00 1213.4 1024 62.7
Medtr3g075100 Medicago truncatula HOM05D005223 ORTHO05D006449 0.0e+00 1211.4 1011 61.0
VMungo1309G0017 Vigna mungo HOM05D005223 ORTHO05D006449 0.0e+00 1207.2 1022 62.4
Duzib084G0239 Durio zibethinus HOM05D005223 ORTHO05D006449 0.0e+00 1205.7 1024 63.6
Lj9C475T6 Lonicera japonica HOM05D005223 ORTHO05D006449 0.0e+00 1202.2 1031 62.1
CiPaw.12G035700 Carya illinoinensis HOM05D005223 ORTHO05D006449 0.0e+00 1198.0 905 70.1
PGR083G1937 Punica granatum HOM05D005223 ORTHO05D006449 0.0e+00 1196.4 1038 62.1
TPR.G13978 Trifolium pratense HOM05D005223 ORTHO05D006449 0.0e+00 1195.3 1015 61.3
Eucgr.L01337 Eucalyptus grandis HOM05D005223 ORTHO05D006449 0.0e+00 1193.3 1017 60.8
Lalb_Chr08g0236961 Lupinus albus HOM05D005223 ORTHO05D006449 0.0e+00 1186.4 1011 61.1
MSTRG.11293 Avicennia marina HOM05D005223 ORTHO05D006449 0.0e+00 1184.5 1016 60.9
Aqoxy5G03583 Aquilegia oxysepala HOM05D005223 ORTHO05D006449 0.0e+00 1161.7 1018 60.7
ECA246G2102 Erigeron canadensis HOM05D005223 ORTHO05D006449 0.0e+00 1157.1 1015 60.4
SGA_v2.0_scaffold457G51932 Striga asiatica HOM05D005223 ORTHO05D006449 0.0e+00 1157.1 1023 58.9
HanXRQChr05g0154741 Helianthus annuus HOM05D005223 ORTHO05D006449 0.0e+00 1156.4 1010 59.3
arahy.Tifrunner.gnm1.ann1.D4E4RT Arachis hypogaea HOM05D005223 ORTHO05D006449 0.0e+00 1152.1 1045 60.0
DCAR_021603 Daucus carota HOM05D005223 ORTHO05D006449 0.0e+00 1150.6 1014 59.8
THA.LOC104818196 Tarenaya hassleriana HOM05D005223 ORTHO05D006449 0.0e+00 1149.0 1019 58.5
Cc04_g10370 Coffea canephora HOM05D005223 ORTHO05D006449 0.0e+00 1147.5 1007 59.8
Migut.I00475 Erythranthe guttata HOM05D005223 ORTHO05D006449 0.0e+00 1147.1 1018 59.7
Nitab4.5_0000955g0070 Nicotiana tabacum HOM05D005223 ORTHO05D006449 0.0e+00 1139.8 1020 60.2
Solyc10g006780.4 Solanum lycopersicum HOM05D005223 ORTHO05D006449 0.0e+00 1139.8 1002 58.9
PGSC0003DMG400025026 Solanum tuberosum HOM05D005223 ORTHO05D006449 0.0e+00 1137.9 1009 59.4
Nitab4.5_0002775g0020 Nicotiana tabacum HOM05D005223 ORTHO05D006449 0.0e+00 1137.1 1018 59.9
Sopen10g002700 Solanum pennellii HOM05D005223 ORTHO05D006449 0.0e+00 1135.2 1004 59.4
SalBow5G2547 Salvia bowleyana HOM05D005223 ORTHO05D006449 0.0e+00 1126.3 1028 57.2
AL5G27880 Arabidopsis lyrata HOM05D005223 ORTHO05D006449 0.0e+00 1124.4 1025 58.0
AT3G48470 Arabidopsis thaliana HOM05D005223 ORTHO05D006449 0.0e+00 1124.4 1025 58.0
PSO063G1058 Papaver somniferum HOM05D005223 ORTHO05D006449 0.0e+00 1117.1 1024 57.6
Carub.0005s1465 Capsella rubella HOM05D005223 ORTHO05D006449 0.0e+00 1114.0 1023 57.7
CAN.G1110.40 Capsicum annuum HOM05D005223 ORTHO05D006449 0.0e+00 1099.0 1021 57.5
CARHR157230 Cardamine hirsuta HOM05D005223 ORTHO05D006449 0.0e+00 1098.2 1022 56.9
Lsat_1_v5_gn_5_13240 Lactuca sativa HOM05D005223 ORTHO05D006449 0.0e+00 1095.1 991 58.1
Peaxi162Scf00536g00422 Petunia axillaris HOM05D005223 ORTHO05D006449 0.0e+00 1084.7 1011 57.7
Sp5g13560 Schrenkiella parvula HOM05D005223 ORTHO05D006449 0.0e+00 1080.1 1025 56.0
BcaC01g02344 Brassica carinata HOM05D005223 ORTHO05D006449 0.0e+00 1078.2 1012 57.4
C03p66340 Brassica napus HOM05D005223 ORTHO05D006449 0.0e+00 1076.2 1012 57.2
BcaB02g10650 Brassica carinata HOM05D005223 ORTHO05D006449 8.3e-311 1070.5 1016 56.4
BraA06t25704Z Brassica rapa HOM05D005223 ORTHO05D006449 1.4e-310 1069.7 1024 57.2
A06p27680 Brassica napus HOM05D005223 ORTHO05D006449 4.0e-310 1068.1 1022 57.0
Sc10g0010350 Simmondsia chinensis HOM05D005223 ORTHO05D006449 7.6e-309 1063.9 950 59.5
Psat5g141880 Pisum sativum HOM05D005223 ORTHO05D006449 4.2e-307 1058.1 897 61.3
BolC3t18905H Brassica oleracea HOM05D005223 ORTHO05D006449 5.4e-307 1057.7 1032 56.3
COL.COLO4_09267 Corchorus olitorius HOM05D005223 ORTHO05D006449 6.9e-302 1040.8 852 66.1
CDE02G2587 Ceratophyllum demersum HOM05D005223 ORTHO05D006449 2.6e-301 1038.9 1031 53.3
EL10Ac7g18074 Beta vulgaris HOM05D005223 ORTHO05D006449 7.8e-298 1027.3 1019 55.9
AUR62025728 Chenopodium quinoa HOM05D005223 ORTHO05D006449 1.6e-295 1019.6 1033 54.6
AUR62001278 Chenopodium quinoa HOM05D005223 ORTHO05D006449 2.1e-295 1019.2 1032 54.7
ATR0824G104 Amborella trichopoda HOM05D005223 ORTHO05D006449 6.2e-295 1017.7 1015 54.9
Thhalv10010098m.g Eutrema salsugineum HOM05D005223 ORTHO05D006449 4.8e-287 991.5 1019 53.4
Hund18539 Selenicereus undatus HOM05D005223 ORTHO05D006449 9.3e-283 977.2 976 54.6
SGA_v2.0_scaffold50G18602 Striga asiatica HOM05D005223 ORTHO05D006449 6.7e-281 971.1 1023 53.1
Os02g0598800 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 9.0e-278 960.7 1026 51.0
Zm00001eb246300 Zea mays HOM05D005223 ORTHO05D006449 1.1e-275 953.7 1023 50.7
Glyma.06G172900 Glycine max HOM05D005223 ORTHO05D006449 3.7e-263 912.1 739 62.9
Eucgr.B00148 Eucalyptus grandis HOM05D005223 ORTHO05D006449 8.2e-263 911.0 1024 51.1
arahy.Tifrunner.gnm1.ann1.9N92ER Arachis hypogaea HOM05D005223 ORTHO05D006449 5.3e-262 908.3 769 63.1
Os02g0599100 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 8.1e-202 708.4 665 56.7
Os02g0598400 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 3.1e-201 706.4 666 56.2
CSS0005553 Camellia sinensis var. sinensis HOM05D005223 ORTHO05D006449 1.1e-198 698.0 640 60.8
Actinidia19387 Actinidia chinensis HOM05D005223 ORTHO05D006449 8.9e-193 678.3 594 59.3
Cpa.g.sc52.35 Carica papaya HOM05D005223 ORTHO05D006449 4.2e-182 642.9 568 64.1
Aa31LG4G17060 Aethionema arabicum HOM05D005223 ORTHO05D006449 3.9e-180 636.3 617 56.7
FvH4_5g07461 Fragaria vesca HOM05D005223 ORTHO05D006449 1.8e-164 584.3 326 96.0
Pp3c24_17160 Physcomitrium patens HOM05D005223 ORTHO05D006449 1.1e-158 565.1 1052 35.9
Mapoly0075s0016 Marchantia polymorpha HOM05D005223 ORTHO05D006449 9.7e-155 552.0 996 37.0
SHI10647 Sapria himalayana HOM05D005223 ORTHO05D006449 1.0e-151 542.0 533 58.2
SMO367G0489 Selaginella moellendorffii HOM05D005223 ORTHO05D006449 2.5e-134 484.2 903 36.5
Oeu007006.1 Olea europaea HOM05D005223 ORTHO05D006449 4.4e-131 473.4 348 69.3
FvH4_5g07361 Fragaria vesca HOM05D005223 ORTHO05D006449 1.3e-119 435.3 618 48.5
Oeu057221.1 Olea europaea HOM05D005223 ORTHO05D006449 1.2e-109 402.1 394 52.8
FvH4_3g25520 Fragaria vesca HOM05D005223 ORTHO05D006449 5.7e-107 393.3 254 82.3
Aa31LG4G17050 Aethionema arabicum HOM05D005223 ORTHO05D006449 9.8e-99 365.9 443 45.8
CBR_g45764 Chara braunii HOM05D005223 ORTHO05D006449 3.0e-95 354.4 1113 27.5
CBR_g52378 Chara braunii HOM05D005223 ORTHO05D006449 1.2e-91 342.4 1130 27.4
FvH4_5g07460 Fragaria vesca HOM05D005223 ORTHO05D006449 6.8e-84 316.6 226 78.3
Cpa.g.sc52.34 Carica papaya HOM05D005223 ORTHO05D006449 5.4e-81 307.0 359 46.2
MBI11_g36316_MAGBIO Magnolia biondii HOM05D005223 ORTHO05D006449 1.6e-56 225.7 224 56.7
MD06G1153900 Malus domestica HOM05D005223 ORTHO05D006449 2.7e-48 198.4 194 60.8
Nn8g40428 Nelumbo nucifera HOM05D005223 ORTHO05D006449 8.7e-47 193.4 146 65.1
Lsat_1_v5_gn_0_22080 Lactuca sativa HOM05D005223 ORTHO05D006449 5.7e-38 164.1 149 51.7
QL10p005098 Quercus lobata HOM05D005223 ORTHO05D006449 1.3e-29 136.3 165 49.7
SEGI_02888 Sequoiadendron giganteum HOM05D005223 ORTHO05D006449 5.0e-26 124.4 220 35.0
Nn7g38107 Nelumbo nucifera HOM05D005223 ORTHO05D006449 3.2e-25 121.7 103 57.3
SEGI_05777 Sequoiadendron giganteum HOM05D005223 ORTHO05D006449 3.6e-24 118.2 179 37.4
Cre03.g186550 Chlamydomonas reinhardtii HOM05D005223 ORTHO05D006449 6.1e-24 117.5 425 27.5
Actinidia25613 Actinidia chinensis HOM05D005223 ORTHO05D006449 3.0e-23 115.2 128 46.9
SalBow5G3736 Salvia bowleyana HOM05D005223 ORTHO05D006449 6.7e-23 114.0 90 58.9
RcHm_v2.0_Chr0c39g0503251 Rosa chinensis HOM05D005223 ORTHO05D006449 5.7e-22 110.9 60 88.3
RcHm_v2.0_Chr1g0353191 Rosa chinensis HOM05D005223 ORTHO05D006449 5.7e-22 110.9 60 88.3
RcHm_v2.0_Chr1g0339741 Rosa chinensis HOM05D005223 ORTHO05D006449 1.7e-21 109.4 65 80.0
Lsat_1_v5_gn_1_114041 Lactuca sativa HOM05D005223 ORTHO05D006449 4.1e-20 104.8 111 48.6
ECA246G0437 Erigeron canadensis HOM05D005223 ORTHO05D006449 3.5e-19 101.7 213 37.6
RcHm_v2.0_Chr4g0412201 Rosa chinensis HOM05D005223 ORTHO05D006449 1.0e-18 100.1 65 75.4
SalBow1G2179 Salvia bowleyana HOM05D005223 ORTHO05D006449 1.3e-18 99.8 69 65.2
SalBow1G1130 Salvia bowleyana HOM05D005223 ORTHO05D006449 6.5e-18 97.4 69 63.8
Nn3g20975 Nelumbo nucifera HOM05D005223 ORTHO05D006449 1.6e-16 92.8 105 50.5
DCAR_016747 Daucus carota HOM05D000329 ORTHO05D006449 8.2e-13 80.5 75 50.7
HPP92_024695 Vanilla planifolia HOM05D005223 ORTHO05D006449 1.1e-12 80.1 148 39.9
AagrBONN_evm.TU.Sc2ySwM_228.970 Anthoceros agrestis HOM05D005223 ORTHO05D006449 2.0e-11 75.9 242 32.6
MD00G1179800 Malus domestica HOM05D005223 ORTHO05D006449 1.5e-09 69.7 98 45.9
RcHm_v2.0_Chr6g0278011 Rosa chinensis HOM05D005223 ORTHO05D006449 2.5e-09 68.9 47 70.2
Nitab4.5_0004801g0040 Nicotiana tabacum HOM05D000112 ORTHO05D001327 1.0e-07 63.5 33 81.8
MCO03G522 Micromonas commoda HOM05D005223 ORTHO05D006449 1.8e-07 62.8 1103 21.0
Actinidia19388 Actinidia chinensis HOM05D005223 ORTHO05D006449 4.0e-07 61.6 33 84.8
MD06G1154000 Malus domestica HOM05D005223 ORTHO05D006449 3.4e-06 58.5 47 59.6


User provided reference genes

Program Settings