Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G2944 Fragaria x ananassa HOM05D006246 ORTHO05D007932 3.3e-16 88.6 109 100.0
FvH4_5g18370 Fragaria vesca HOM05D006246 ORTHO05D007932 1.0e-14 83.6 79 94.9
FAN08G0289 Fragaria x ananassa HOM05D006246 ORTHO05D007932 1.0e-14 83.6 43 93.0
FAN13G0403 Fragaria x ananassa HOM05D006246 ORTHO05D007932 1.0e-14 83.6 43 93.0
FAN18G0928 Fragaria x ananassa HOM05D006246 ORTHO05D007932 1.0e-14 83.6 43 93.0
THA.LOC104826210 Tarenaya hassleriana HOM05D006246 ORTHO05D007932 1.2e-13 80.1 42 90.5
THA.LOC104800880 Tarenaya hassleriana HOM05D006246 ORTHO05D007932 1.5e-13 79.7 42 88.1
Atru.chr13.2337 Acer truncatum HOM05D006246 ORTHO05D007932 8.3e-12 73.9 41 85.4
Atru.chr3.3065 Acer truncatum HOM05D006246 ORTHO05D007932 8.3e-12 73.9 41 85.4
SHI11488 Sapria himalayana HOM05D006246 ORTHO05D007932 1.4e-11 73.2 41 82.9
Aa31LG5G5660 Aethionema arabicum HOM05D006246 ORTHO05D007932 2.4e-11 72.4 41 82.9
BcaB02g10382 Brassica carinata HOM05D006246 ORTHO05D007932 2.4e-11 72.4 41 82.9
BcaC02g11223 Brassica carinata HOM05D006246 ORTHO05D007932 2.4e-11 72.4 41 82.9
A05p14300 Brassica napus HOM05D006246 ORTHO05D007932 2.4e-11 72.4 41 82.9
BolC4t23440H Brassica oleracea HOM05D006246 ORTHO05D007932 2.4e-11 72.4 41 82.9
Carub.0004s1261 Capsella rubella HOM05D006246 ORTHO05D007932 2.4e-11 72.4 41 82.9
CARHR124920 Cardamine hirsuta HOM05D006246 ORTHO05D007932 2.4e-11 72.4 41 82.9
DCAR_027686 Daucus carota HOM05D006246 ORTHO05D007932 2.4e-11 72.4 41 82.9
Thhalv10017462m.g Eutrema salsugineum HOM05D006246 ORTHO05D007932 2.4e-11 72.4 41 82.9
Sp4g13780 Schrenkiella parvula HOM05D006246 ORTHO05D007932 4.1e-11 71.6 41 82.9
Cpa.g.sc49.43 Carica papaya HOM05D006246 ORTHO05D007932 5.4e-11 71.2 41 85.4
Sc23g0001630 Simmondsia chinensis HOM05D006246 ORTHO05D007932 5.4e-11 71.2 40 82.5
QL02p028696 Quercus lobata HOM05D006246 ORTHO05D007932 7.0e-11 70.9 40 85.0
CSS0014325 Camellia sinensis var. sinensis HOM05D006246 ORTHO05D007932 9.2e-11 70.5 38 84.2
Potri.007G101900 Populus trichocarpa HOM05D006246 ORTHO05D007932 9.2e-11 70.5 41 80.5
Cfa012983 Carpinus fangiana HOM05D006246 ORTHO05D007932 1.6e-10 69.7 41 85.4
Ca_00010_v3 Cicer arietinum L. HOM05D006246 ORTHO05D007932 1.6e-10 69.7 41 80.5
Ca_00013_v3 Cicer arietinum L. HOM05D006246 ORTHO05D007932 1.6e-10 69.7 41 80.5
Haze_21346 Corylus avellana HOM05D006246 ORTHO05D007932 1.6e-10 69.7 41 85.4
Haze_21352 Corylus avellana HOM05D006246 ORTHO05D007932 1.6e-10 69.7 41 85.4
Lj5g0026305 Lotus japonicus HOM05D006246 ORTHO05D007932 1.6e-10 69.7 41 80.5
Potri.005G067400 Populus trichocarpa HOM05D006246 ORTHO05D007932 2.0e-10 69.3 41 78.0
Actinidia30538 Actinidia chinensis HOM05D006246 ORTHO05D007932 2.7e-10 68.9 41 78.0
Carub.0002s2226 Capsella rubella HOM05D006246 ORTHO05D007932 2.7e-10 68.9 41 78.0
Glyma.04G204100 Glycine max HOM05D006246 ORTHO05D007932 2.7e-10 68.9 41 80.5
Glyma.06G161300 Glycine max HOM05D006246 ORTHO05D007932 2.7e-10 68.9 41 80.5
Sabra07G0084000 Salix brachista HOM05D006246 ORTHO05D007932 2.7e-10 68.9 39 82.1
Ciclev10002937m.g Citrus clementina HOM05D006246 ORTHO05D007932 3.5e-10 68.6 41 80.5
Medtr1g101240 Medicago truncatula HOM05D006246 ORTHO05D007932 3.5e-10 68.6 41 78.0
Phvul.009G159900 Phaseolus vulgaris HOM05D006246 ORTHO05D007932 3.5e-10 68.6 41 78.0
Psat6g198440 Pisum sativum HOM05D006246 ORTHO05D007932 3.5e-10 68.6 41 78.0
Sp1g40730 Schrenkiella parvula HOM05D006246 ORTHO05D007932 3.5e-10 68.6 41 80.5
TPR.G26967 Trifolium pratense HOM05D006246 ORTHO05D007932 3.5e-10 68.6 41 78.0
TWI59G0384 Tripterygium wilfordii HOM05D006246 ORTHO05D007932 3.5e-10 68.6 41 85.4
TWI14G1413 Tripterygium wilfordii HOM05D006246 ORTHO05D007932 1.0e-09 67.0 41 82.9
Sabra05G0055400 Salix brachista HOM05D006246 ORTHO05D007932 1.3e-09 66.6 41 75.6
Migut.N03358 Erythranthe guttata HOM05D006246 ORTHO05D007932 1.7e-09 66.2 41 75.6
MBI03_g07695_MAGBIO Magnolia biondii HOM05D006246 ORTHO05D007932 2.3e-09 65.9 41 73.2
TPR.G20664 Trifolium pratense HOM05D006246 ORTHO05D007932 3.0e-09 65.5 39 76.9
Actinidia08157 Actinidia chinensis HOM05D006246 ORTHO05D007932 3.9e-09 65.1 36 80.6
Gohir.A05G293700 Gossypium hirsutum HOM05D006246 ORTHO05D007932 5.0e-09 64.7 41 73.2
Gohir.A05G410500 Gossypium hirsutum HOM05D006246 ORTHO05D007932 5.0e-09 64.7 41 73.2
Gohir.D05G294400 Gossypium hirsutum HOM05D006246 ORTHO05D007932 5.0e-09 64.7 41 73.2
Gorai.009G310900 Gossypium raimondii HOM05D006246 ORTHO05D007932 5.0e-09 64.7 41 73.2
COL.COLO4_29720 Corchorus olitorius HOM05D006246 ORTHO05D007932 6.6e-09 64.3 41 73.2
A05p14510 Brassica napus HOM05D006246 ORTHO05D007932 8.6e-09 63.9 42 76.2
Duzib106G0997 Durio zibethinus HOM05D006246 ORTHO05D007932 8.6e-09 63.9 41 70.7
Eucgr.I02713 Eucalyptus grandis HOM05D006246 ORTHO05D007932 8.6e-09 63.9 44 75.0
SalBow8G1996 Salvia bowleyana HOM05D006246 ORTHO05D007932 8.6e-09 63.9 41 73.2
SGA_v2.0_scaffold118G32544 Striga asiatica HOM05D006246 ORTHO05D007932 8.6e-09 63.9 41 73.2
SGA_v2.0_scaffold24G10594 Striga asiatica HOM05D006246 ORTHO05D007932 8.6e-09 63.9 41 73.2
Thecc.03G070200 Theobroma cacao HOM05D006246 ORTHO05D007932 8.6e-09 63.9 41 70.7
Lalb_Chr01g0009371 Lupinus albus HOM05D006246 ORTHO05D007932 1.1e-08 63.5 41 78.0
Lalb_Chr03g0034581 Lupinus albus HOM05D006246 ORTHO05D007932 1.9e-08 62.8 41 78.0
HPP92_026670 Vanilla planifolia HOM05D006246 ORTHO05D007932 1.9e-08 62.8 41 73.2
Duzib114G0955 Durio zibethinus HOM05D006246 ORTHO05D007932 2.5e-08 62.4 41 68.3
HanXRQChr11g0322351 Helianthus annuus HOM05D006246 ORTHO05D007932 2.5e-08 62.4 37 75.7
Sed0027909 Sechium edule HOM05D006246 ORTHO05D007932 2.5e-08 62.4 39 79.5
BraA05t20382Z Brassica rapa HOM05D006246 ORTHO05D007932 3.3e-08 62.0 42 73.8
Oeu021218.1 Olea europaea HOM05D006246 ORTHO05D007932 3.3e-08 62.0 41 70.7
PSO170G6052 Papaver somniferum HOM05D006246 ORTHO05D007932 9.5e-08 60.5 41 70.7
PSO782G0303 Papaver somniferum HOM05D006246 ORTHO05D007932 9.5e-08 60.5 41 70.7
Migut.C01275 Erythranthe guttata HOM05D006246 ORTHO05D007932 1.6e-07 59.7 41 68.3
TAR636G3186 Trochodendron aralioides HOM05D006246 ORTHO05D007932 1.6e-07 59.7 33 81.8
Duzib128G0188 Durio zibethinus HOM05D006246 ORTHO05D007932 2.1e-07 59.3 37 70.3
MD06G1239400 Malus domestica HOM05D006246 ORTHO05D007932 2.1e-07 59.3 32 84.4
Sc26g0000490 Simmondsia chinensis HOM05D006246 ORTHO05D007932 2.1e-07 59.3 39 79.5
Aqoxy7G03540 Aquilegia oxysepala HOM05D006246 ORTHO05D007932 4.7e-07 58.2 42 69.0
CDE02G3719 Ceratophyllum demersum HOM05D006246 ORTHO05D007932 8.0e-07 57.4 44 65.9
vmacro01162 Vaccinium macrocarpon HOM05D006246 ORTHO05D007932 8.0e-07 57.4 31 80.6
CARHR068770 Cardamine hirsuta HOM05D006246 ORTHO05D007932 1.8e-06 56.2 46 63.0
Sed0011737 Sechium edule HOM05D006246 ORTHO05D007932 1.8e-06 56.2 31 80.6
TWI23G1247 Tripterygium wilfordii HOM05D006246 ORTHO05D007932 1.8e-06 56.2 31 80.6
BcaB06g28525 Brassica carinata HOM05D006246 ORTHO05D007932 2.3e-06 55.8 37 81.1
BolC4t27573H Brassica oleracea HOM05D006246 ORTHO05D007932 2.3e-06 55.8 37 81.1
Os05g0270400 Oryza sativa ssp. japonica HOM05D006246 ORTHO05D007932 2.3e-06 55.8 42 66.7
RcHm_v2.0_Chr7g0177221 Rosa chinensis HOM05D006246 ORTHO05D007932 2.3e-06 55.8 26 100.0
CDE09G0543 Ceratophyllum demersum HOM05D000196 ORTHO05D000279 3.1e-06 55.5 44 61.4
Medtr7g085440 Medicago truncatula HOM05D006246 ORTHO05D007932 3.1e-06 55.5 30 80.0
Os04g0295000 Oryza sativa ssp. japonica HOM05D006246 ORTHO05D007932 3.1e-06 55.5 40 70.0
arahy.Tifrunner.gnm1.ann1.V9PSGM Arachis hypogaea HOM05D006246 ORTHO05D007932 4.0e-06 55.1 33 75.8
CANSAT01G1683 Cannabis sativa HOM05D006246 ORTHO05D007932 4.0e-06 55.1 27 92.6
CANSAT80G0306 Cannabis sativa HOM05D006246 ORTHO05D007932 4.0e-06 55.1 27 92.6
CAN.G1647.5 Capsicum annuum HOM05D006246 ORTHO05D007932 4.0e-06 55.1 33 72.7
CiPaw.08G003600 Carya illinoinensis HOM05D006246 ORTHO05D007932 6.8e-06 54.3 26 96.2
Cc05_g03280 Coffea canephora HOM05D006246 ORTHO05D007932 8.9e-06 53.9 32 75.0
Zm00001eb059790 Zea mays HOM05D006246 ORTHO05D007932 8.9e-06 53.9 42 64.3


User provided reference genes

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