Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G2943 Fragaria x ananassa HOM05D005946 ORTHO05D007340 5.1e-41 170.6 85 100.0
FAN08G3074 Fragaria x ananassa HOM05D005946 ORTHO05D007340 9.6e-24 113.2 84 72.6
FAN18G3129 Fragaria x ananassa HOM05D005946 ORTHO05D007340 4.8e-23 110.9 85 71.8
RcHm_v2.0_Chr7g0186171 Rosa chinensis HOM05D005946 ORTHO05D007340 1.9e-11 72.4 41 87.8
FvH4_5g11580 Fragaria vesca HOM05D005946 ORTHO05D007340 3.2e-11 71.6 36 100.0
Prupe.5G124600 Prunus persica HOM05D005946 ORTHO05D007340 7.2e-11 70.5 36 97.2
A10p19740 Brassica napus HOM05D005946 ORTHO05D007340 1.2e-10 69.7 38 89.5
C09p56030 Brassica napus HOM05D005946 ORTHO05D007340 1.2e-10 69.7 38 89.5
BolC9t58470H Brassica oleracea HOM05D005946 ORTHO05D007340 1.2e-10 69.7 38 89.5
BraA10t44050Z Brassica rapa HOM05D005946 ORTHO05D007340 1.2e-10 69.7 38 89.5
MD14G1133000 Malus domestica HOM05D005946 ORTHO05D007340 1.6e-10 69.3 36 94.4
CANSAT21G2474 Cannabis sativa HOM05D005946 ORTHO05D007340 2.1e-10 68.9 36 94.4
HanXRQChr07g0190741 Helianthus annuus HOM05D005946 ORTHO05D007340 2.1e-10 68.9 36 94.4
Lsat_1_v5_gn_6_8840 Lactuca sativa HOM05D005946 ORTHO05D007340 2.1e-10 68.9 36 94.4
BolC3t13619H Brassica oleracea HOM05D005946 ORTHO05D007340 2.7e-10 68.6 37 89.2
BraA03t10302Z Brassica rapa HOM05D005946 ORTHO05D007340 2.7e-10 68.6 37 89.2
Aa31LG10G8610 Aethionema arabicum HOM05D005946 ORTHO05D007340 4.6e-10 67.8 36 91.7
AL6G31720 Arabidopsis lyrata HOM05D005946 ORTHO05D007340 4.6e-10 67.8 36 91.7
AT5G20165 Arabidopsis thaliana HOM05D005946 ORTHO05D007340 4.6e-10 67.8 36 91.7
A03p09890 Brassica napus HOM05D005946 ORTHO05D007340 4.6e-10 67.8 36 91.7
C03p11470 Brassica napus HOM05D005946 ORTHO05D007340 4.6e-10 67.8 36 91.7
Carub.0006s1856 Capsella rubella HOM05D005946 ORTHO05D007340 4.6e-10 67.8 36 91.7
CARHR192660 Cardamine hirsuta HOM05D005946 ORTHO05D007340 4.6e-10 67.8 36 91.7
Thhalv10015210m.g Eutrema salsugineum HOM05D005946 ORTHO05D007340 4.6e-10 67.8 36 91.7
Sp6g24240 Schrenkiella parvula HOM05D005946 ORTHO05D007340 4.6e-10 67.8 36 91.7
THA.LOC104799646 Tarenaya hassleriana HOM05D005946 ORTHO05D007340 4.6e-10 67.8 36 91.7
THA.LOC109116592 Tarenaya hassleriana HOM05D005946 ORTHO05D007340 4.6e-10 67.8 36 91.7
CSS0024427 Camellia sinensis var. sinensis HOM05D005946 ORTHO05D007340 6.1e-10 67.4 39 87.2
ECA246G0405 Erigeron canadensis HOM05D005946 ORTHO05D007340 6.1e-10 67.4 36 91.7
HanXRQChr17g0534681 Helianthus annuus HOM05D005946 ORTHO05D007340 6.1e-10 67.4 36 91.7
Lsat_1_v5_gn_3_12801 Lactuca sativa HOM05D005946 ORTHO05D007340 6.1e-10 67.4 36 91.7
Actinidia27305 Actinidia chinensis HOM05D005946 ORTHO05D007340 7.9e-10 67.0 36 91.7
Lj4g0023384 Lotus japonicus HOM05D005946 ORTHO05D007340 7.9e-10 67.0 36 91.7
Sabra10G0047000 Salix brachista HOM05D005946 ORTHO05D007340 1.0e-09 66.6 94 44.7
MBI07_g24770_MAGBIO Magnolia biondii HOM05D005946 ORTHO05D007340 1.8e-09 65.9 38 81.6
Rhsim07G0080600 Rhododendron simsii HOM05D005946 ORTHO05D007340 1.8e-09 65.9 36 88.9
CDE10G0420 Ceratophyllum demersum HOM05D005946 ORTHO05D007340 3.0e-09 65.1 36 86.1
CDE10G0705 Ceratophyllum demersum HOM05D005946 ORTHO05D007340 3.0e-09 65.1 36 86.1
MD06G1111800 Malus domestica HOM05D005946 ORTHO05D007340 3.0e-09 65.1 36 88.9
Nn3g18946 Nelumbo nucifera HOM05D005946 ORTHO05D007340 3.0e-09 65.1 36 86.1
Peaxi162Scf00207g00238 Petunia axillaris HOM05D005946 ORTHO05D007340 3.0e-09 65.1 41 80.5
TAR374G1140 Trochodendron aralioides HOM05D005946 ORTHO05D007340 3.9e-09 64.7 36 86.1
Actinidia22739 Actinidia chinensis HOM05D005946 ORTHO05D007340 6.7e-09 63.9 36 88.9
Duzib251G0400 Durio zibethinus HOM05D005946 ORTHO05D007340 6.7e-09 63.9 36 86.1
Gohir.A03G127300 Gossypium hirsutum HOM05D005946 ORTHO05D007340 6.7e-09 63.9 36 86.1
Gorai.005G169000 Gossypium raimondii HOM05D005946 ORTHO05D007340 6.7e-09 63.9 36 86.1
Rhsim12G0028200 Rhododendron simsii HOM05D005946 ORTHO05D007340 6.7e-09 63.9 36 88.9
Thecc.02G276900 Theobroma cacao HOM05D005946 ORTHO05D007340 6.7e-09 63.9 36 86.1
vmacro14062 Vaccinium macrocarpon HOM05D005946 ORTHO05D007340 6.7e-09 63.9 37 83.8
Eucgr.B03471 Eucalyptus grandis HOM05D005946 ORTHO05D007340 8.8e-09 63.5 36 83.3
Gohir.D02G150700 Gossypium hirsutum HOM05D005946 ORTHO05D007340 8.8e-09 63.5 36 86.1
Dinv14819 Davidia involucrata HOM05D005946 ORTHO05D007340 1.5e-08 62.8 36 86.1
Duzib248G1204 Durio zibethinus HOM05D005946 ORTHO05D007340 1.5e-08 62.8 36 83.3
Gorai.002G192200 Gossypium raimondii HOM05D005946 ORTHO05D007340 1.5e-08 62.8 36 86.1
Psat7g023880 Pisum sativum HOM05D005946 ORTHO05D007340 1.5e-08 62.8 36 86.1
vmacro01071 Vaccinium macrocarpon HOM05D005946 ORTHO05D007340 1.5e-08 62.8 36 86.1
EL10Ac6g13474 Beta vulgaris HOM05D005946 ORTHO05D007340 1.9e-08 62.4 36 80.6
CAN.G843.5 Capsicum annuum HOM05D005946 ORTHO05D007340 1.9e-08 62.4 37 81.1
Os05g0251500 Oryza sativa ssp. japonica HOM05D005946 ORTHO05D007340 1.9e-08 62.4 36 80.6
PSO063G0123 Papaver somniferum HOM05D005946 ORTHO05D007340 1.9e-08 62.4 36 80.6
PSO170G6765 Papaver somniferum HOM05D005946 ORTHO05D007340 1.9e-08 62.4 36 80.6
Manes.12G013300 Manihot esculenta HOM05D005946 ORTHO05D007340 2.5e-08 62.0 36 83.3
Manes.13G017850 Manihot esculenta HOM05D005946 ORTHO05D007340 2.5e-08 62.0 36 83.3
Sabra08G0134600 Salix brachista HOM05D005946 ORTHO05D007340 2.5e-08 62.0 36 83.3
TWI14G1045 Tripterygium wilfordii HOM05D005946 ORTHO05D007340 2.5e-08 62.0 36 83.3
TWI36G1309 Tripterygium wilfordii HOM05D005946 ORTHO05D007340 2.5e-08 62.0 36 83.3
TWI36G1530 Tripterygium wilfordii HOM05D005946 ORTHO05D007340 2.5e-08 62.0 36 83.3
Cc00_g13530 Coffea canephora HOM05D005946 ORTHO05D007340 3.3e-08 61.6 36 83.3
Nitab4.5_0001841g0040 Nicotiana tabacum HOM05D005946 ORTHO05D007340 3.3e-08 61.6 36 83.3
Peaxi162Scf00314g00635 Petunia axillaris HOM05D005946 ORTHO05D007340 3.3e-08 61.6 36 83.3
SalBow3G2240 Salvia bowleyana HOM05D005946 ORTHO05D007340 3.3e-08 61.6 36 83.3
Solyc03g118140.3 Solanum lycopersicum HOM05D005946 ORTHO05D007340 3.3e-08 61.6 36 83.3
Solyc06g068780.3 Solanum lycopersicum HOM05D005946 ORTHO05D007340 3.3e-08 61.6 36 83.3
Sopen03g037060 Solanum pennellii HOM05D005946 ORTHO05D007340 3.3e-08 61.6 36 83.3
Sopen06g026060 Solanum pennellii HOM05D005946 ORTHO05D007340 3.3e-08 61.6 36 83.3
PGSC0003DMG400025576 Solanum tuberosum HOM05D005946 ORTHO05D007340 3.3e-08 61.6 36 83.3
Ciclev10033263m.g Citrus clementina HOM05D005946 ORTHO05D007340 4.3e-08 61.2 36 80.6
Medtr3g085600 Medicago truncatula HOM05D005946 ORTHO05D007340 4.3e-08 61.2 36 80.6
Nitab4.5_0008858g0060 Nicotiana tabacum HOM05D005946 ORTHO05D007340 4.3e-08 61.2 39 74.4
PGR004G0564 Punica granatum HOM05D005946 ORTHO05D007340 5.7e-08 60.8 36 80.6
SHI17703 Sapria himalayana HOM05D005946 ORTHO05D007340 5.7e-08 60.8 36 80.6
Zm00001eb237180 Zea mays HOM05D005946 ORTHO05D007340 5.7e-08 60.8 39 71.8
arahy.Tifrunner.gnm1.ann1.XCNA8V Arachis hypogaea HOM05D005946 ORTHO05D007340 7.4e-08 60.5 37 75.7
CAN.G1089.18 Capsicum annuum HOM05D005946 ORTHO05D007340 7.4e-08 60.5 37 78.4
Lalb_Chr05g0223941 Lupinus albus HOM05D005946 ORTHO05D007340 7.4e-08 60.5 36 80.6
Lalb_Chr09g0332191 Lupinus albus HOM05D005946 ORTHO05D007340 7.4e-08 60.5 36 80.6
Sed0027475 Sechium edule HOM05D005946 ORTHO05D007340 7.4e-08 60.5 36 77.8
arahy.Tifrunner.gnm1.ann1.K0QS2G Arachis hypogaea HOM05D005946 ORTHO05D007340 9.7e-08 60.1 37 75.7
MSTRG.28215 Avicennia marina HOM05D005946 ORTHO05D007340 9.7e-08 60.1 36 80.6
Migut.N01429 Erythranthe guttata HOM05D005946 ORTHO05D007340 9.7e-08 60.1 36 80.6
Glyma.11G249100 Glycine max HOM05D005946 ORTHO05D007340 9.7e-08 60.1 36 77.8
Glyma.18G008200 Glycine max HOM05D005946 ORTHO05D007340 9.7e-08 60.1 36 77.8
Mapoly0008s0042 Marchantia polymorpha HOM05D005946 ORTHO05D007340 9.7e-08 60.1 38 73.7
Phvul.001G260400 Phaseolus vulgaris HOM05D005946 ORTHO05D007340 9.7e-08 60.1 36 77.8
Psat5g094720 Pisum sativum HOM05D005946 ORTHO05D007340 9.7e-08 60.1 36 77.8
Potri.008G176801 Populus trichocarpa HOM05D005946 ORTHO05D007340 9.7e-08 60.1 36 80.6
Potri.010G058300 Populus trichocarpa HOM05D005946 ORTHO05D007340 9.7e-08 60.1 36 80.6
SalBow5G0243 Salvia bowleyana HOM05D005946 ORTHO05D007340 9.7e-08 60.1 36 80.6
SalBow5G1014 Salvia bowleyana HOM05D005946 ORTHO05D007340 9.7e-08 60.1 36 80.6
SEGI_28367 Sequoiadendron giganteum HOM05D005946 ORTHO05D007340 9.7e-08 60.1 36 80.6
SGA_v2.0_scaffold11G05656 Striga asiatica HOM05D000612 ORTHO05D000461 9.7e-08 60.1 36 80.6
TPR.G21803 Trifolium pratense HOM05D005946 ORTHO05D007340 9.7e-08 60.1 36 77.8
TPR.G37229 Trifolium pratense HOM05D005946 ORTHO05D007340 9.7e-08 60.1 37 73.0
unitig_747.g21988 Utricularia gibba HOM05D005946 ORTHO05D007340 9.7e-08 60.1 36 80.6
arahy.Tifrunner.gnm1.ann1.55451G Arachis hypogaea HOM05D005946 ORTHO05D007340 1.3e-07 59.7 36 77.8
CiPaw.06G100600 Carya illinoinensis HOM05D005946 ORTHO05D007340 2.2e-07 58.9 36 77.8
ClCG08G010140 Citrullus lanatus HOM05D005946 ORTHO05D007340 2.8e-07 58.5 36 75.0
MELO3C030289.2 Cucumis melo HOM05D005946 ORTHO05D007340 2.8e-07 58.5 36 75.0
CsaV3_6G032330 Cucumis sativus L. HOM05D003413 ORTHO05D004197 2.8e-07 58.5 36 75.0
Migut.B01726 Erythranthe guttata HOM05D005946 ORTHO05D007340 3.7e-07 58.2 36 77.8
Os02g0299600 Oryza sativa ssp. japonica HOM05D005946 ORTHO05D007340 3.7e-07 58.2 36 75.0
Pp3s128_20 Physcomitrium patens HOM05D005946 ORTHO05D007340 4.8e-07 57.8 36 75.0
CiPaw.05G112200 Carya illinoinensis HOM05D005946 ORTHO05D007340 6.3e-07 57.4 36 77.8
PGR102G2803 Punica granatum HOM05D005946 ORTHO05D007340 1.8e-06 55.8 36 72.2
ATR0955G005 Amborella trichopoda HOM05D005946 ORTHO05D007340 5.3e-06 54.3 38 65.8
unitig_0.g1509 Utricularia gibba HOM05D005946 ORTHO05D007340 9.1e-06 53.5 40 67.5


User provided reference genes

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