Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G2807 Fragaria x ananassa HOM05D024386 ORTHO05D022603 6.3e-120 434.1 218 100.0
FAN13G1393 Fragaria x ananassa HOM05D024386 ORTHO05D022603 4.2e-39 165.6 162 58.6
FvH4_5g21660 Fragaria vesca HOM05D024386 ORTHO05D022603 1.0e-37 161.0 218 49.1
FAN18G0876 Fragaria x ananassa HOM05D024386 ORTHO05D022603 1.0e-37 161.0 218 49.1
FAN13G1315 Fragaria x ananassa HOM05D024386 ORTHO05D022603 5.2e-21 105.5 69 82.6
Prupe.8G221400 Prunus persica HOM05D002364 ORTHO05D002540 8.8e-21 104.8 238 37.4
MD10G1181300 Malus domestica HOM05D002364 ORTHO05D002540 2.6e-20 103.2 238 37.0
CANSAT01G0103 Cannabis sativa HOM05D002364 ORTHO05D002540 4.2e-15 85.9 238 34.5
Sopen09g028220 Solanum pennellii HOM05D002364 ORTHO05D002540 5.5e-15 85.5 216 35.6
PGSC0003DMG400010315 Solanum tuberosum HOM05D002364 ORTHO05D002540 5.5e-15 85.5 216 35.6
MD05G1194700 Malus domestica HOM05D002364 ORTHO05D002540 7.2e-15 85.1 240 34.6
Nitab4.5_0006107g0010 Nicotiana tabacum HOM05D002364 ORTHO05D002540 7.2e-15 85.1 216 35.6
Cc01_g18190 Coffea canephora HOM05D002364 ORTHO05D002540 2.1e-14 83.6 221 34.4
Nn1g06880 Nelumbo nucifera HOM05D002364 ORTHO05D002540 2.1e-14 83.6 192 36.5
Nitab4.5_0007062g0030 Nicotiana tabacum HOM05D002364 ORTHO05D002540 3.6e-14 82.8 216 35.2
Actinidia07306 Actinidia chinensis HOM05D002364 ORTHO05D002540 6.1e-14 82.0 235 33.6
RcHm_v2.0_Chr6g0287711 Rosa chinensis HOM05D002364 ORTHO05D002540 1.0e-13 81.3 247 34.4
THA.LOC104801150 Tarenaya hassleriana HOM05D002364 ORTHO05D002540 1.0e-13 81.3 216 35.2
Potri.002G036400 Populus trichocarpa HOM05D002364 ORTHO05D002540 4.0e-13 79.3 233 33.0
SGA_v2.0_scaffold6G03209 Striga asiatica HOM05D002364 ORTHO05D002540 5.2e-13 79.0 235 33.6
ATR0736G205 Amborella trichopoda HOM05D002364 ORTHO05D002540 8.8e-13 78.2 212 34.9
CSS0042466 Camellia sinensis var. sinensis HOM05D002364 ORTHO05D002540 1.2e-12 77.8 217 34.1
vmacro02675 Vaccinium macrocarpon HOM05D002364 ORTHO05D002540 1.2e-12 77.8 214 34.1
FAN27G1824 Fragaria x ananassa HOM05D002364 ORTHO05D002540 1.5e-12 77.4 248 33.9
Thecc.01G255800 Theobroma cacao HOM05D002364 ORTHO05D002540 2.0e-12 77.0 232 34.1
FAN15G1886 Fragaria x ananassa HOM05D002364 ORTHO05D002540 2.6e-12 76.6 248 33.9
FAN20G2656 Fragaria x ananassa HOM05D002364 ORTHO05D002540 2.6e-12 76.6 248 33.9
Sc05g0000640 Simmondsia chinensis HOM05D002364 ORTHO05D002540 2.6e-12 76.6 239 31.4
DCAR_018494 Daucus carota HOM05D002364 ORTHO05D002540 4.4e-12 75.9 216 35.2
Duzib211G0026 Durio zibethinus HOM05D002364 ORTHO05D002540 4.4e-12 75.9 231 33.8
Solyc09g066490.4 Solanum lycopersicum HOM05D002364 ORTHO05D002540 4.4e-12 75.9 88 48.9
Atru.chr5.1730 Acer truncatum HOM05D002364 ORTHO05D002540 5.7e-12 75.5 89 52.8
ECA247G3608 Erigeron canadensis HOM05D002364 ORTHO05D002540 5.7e-12 75.5 183 36.6
Lsat_1_v5_gn_5_182881 Lactuca sativa HOM05D002364 ORTHO05D002540 5.7e-12 75.5 211 34.6
TWI18G0990 Tripterygium wilfordii HOM05D002364 ORTHO05D002540 5.7e-12 75.5 241 33.6
Carub.0001s0304 Capsella rubella HOM05D002364 ORTHO05D002540 9.7e-12 74.7 231 34.2
Duzib138G1348 Durio zibethinus HOM05D002364 ORTHO05D002540 9.7e-12 74.7 212 34.4
FvH4_2g21210 Fragaria vesca HOM05D002364 ORTHO05D002540 9.7e-12 74.7 243 32.5
FAN24G3112 Fragaria x ananassa HOM05D002364 ORTHO05D002540 9.7e-12 74.7 243 32.5
Gohir.A07G213780 Gossypium hirsutum HOM05D002364 ORTHO05D002540 9.7e-12 74.7 228 33.8
QL09p039635 Quercus lobata HOM05D002364 ORTHO05D002540 1.3e-11 74.3 107 44.9
AT1G03900 Arabidopsis thaliana HOM05D002364 ORTHO05D002540 1.7e-11 73.9 231 34.2
COL.COLO4_04022 Corchorus olitorius HOM05D002364 ORTHO05D002540 1.7e-11 73.9 247 34.4
Nitab4.5_0000326g0150 Nicotiana tabacum HOM05D002364 ORTHO05D002540 1.7e-11 73.9 215 34.4
ClCG00G001490 Citrullus lanatus HOM05D002364 ORTHO05D002540 2.2e-11 73.6 221 32.1
ClCG07G001150 Citrullus lanatus HOM05D002364 ORTHO05D002540 2.2e-11 73.6 221 32.1
Glyma.10G038100 Glycine max HOM05D002364 ORTHO05D002540 2.2e-11 73.6 217 33.6
Sabra05G0174800 Salix brachista HOM05D002364 ORTHO05D002540 2.2e-11 73.6 220 33.2
Lj1A69G67 Lonicera japonica HOM05D002364 ORTHO05D002540 2.8e-11 73.2 214 34.1
Potri.005G226400 Populus trichocarpa HOM05D002364 ORTHO05D002540 2.8e-11 73.2 220 33.2
TAR362G1303 Trochodendron aralioides HOM05D002364 ORTHO05D002540 2.8e-11 73.2 215 33.5
TAR633G0449 Trochodendron aralioides HOM05D002364 ORTHO05D002540 2.8e-11 73.2 230 31.3
Aqoxy5G00208 Aquilegia oxysepala HOM05D002364 ORTHO05D002540 3.7e-11 72.8 219 34.2
AL1G13480 Arabidopsis lyrata HOM05D002364 ORTHO05D002540 3.7e-11 72.8 231 33.8
CARHR003220 Cardamine hirsuta HOM05D002364 ORTHO05D002540 3.7e-11 72.8 214 34.6
Dinv34638 Davidia involucrata HOM05D002364 ORTHO05D002540 3.7e-11 72.8 212 34.0
Hma1.2p1_0576F.1_g181940 Hydrangea macrophylla HOM05D002364 ORTHO05D002540 3.7e-11 72.8 212 33.0
Ah.02g112020 Amaranthus hybridus HOM05D002364 ORTHO05D002540 4.8e-11 72.4 230 30.9
Gohir.D07G220100 Gossypium hirsutum HOM05D002364 ORTHO05D002540 4.8e-11 72.4 228 33.3
Gorai.001G254400 Gossypium raimondii HOM05D002364 ORTHO05D002540 4.8e-11 72.4 228 33.3
Sopen06g003190 Solanum pennellii HOM05D002364 ORTHO05D002540 4.8e-11 72.4 214 31.3
PGSC0003DMG401025510 Solanum tuberosum HOM05D002364 ORTHO05D002540 4.8e-11 72.4 214 34.1
THA.LOC104826045 Tarenaya hassleriana HOM05D002364 ORTHO05D002540 4.8e-11 72.4 213 33.3
Cpa.g.sc165.15 Carica papaya HOM05D002364 ORTHO05D002540 6.3e-11 72.0 228 32.5
Gohir.D07G156200 Gossypium hirsutum HOM05D002364 ORTHO05D002540 6.3e-11 72.0 227 31.7
Gorai.001G179100 Gossypium raimondii HOM05D002364 ORTHO05D002540 6.3e-11 72.0 227 31.7
MBI07_g16901_MAGBIO Magnolia biondii HOM05D002403 ORTHO05D002724 6.3e-11 72.0 211 32.7
Sp1g02750 Schrenkiella parvula HOM05D002364 ORTHO05D002540 6.3e-11 72.0 214 34.1
Manes.13G035500 Manihot esculenta HOM05D002364 ORTHO05D002540 8.2e-11 71.6 236 33.1
Nitab4.5_0005593g0010 Nicotiana tabacum HOM05D002364 ORTHO05D002540 8.2e-11 71.6 214 34.1
Peaxi162Scf00624g00314 Petunia axillaris HOM05D002364 ORTHO05D002540 8.2e-11 71.6 215 31.6
TWI75G1021 Tripterygium wilfordii HOM05D002364 ORTHO05D002540 8.2e-11 71.6 215 34.4
CiPaw.03G266300 Carya illinoinensis HOM05D002364 ORTHO05D002540 1.1e-10 71.2 90 50.0
Manes.13G035700 Manihot esculenta HOM05D002364 ORTHO05D002540 1.4e-10 70.9 236 32.6
PGR044G1680 Punica granatum HOM05D002364 ORTHO05D002540 1.4e-10 70.9 214 33.2
SalBow4G1524 Salvia bowleyana HOM05D002364 ORTHO05D002540 1.4e-10 70.9 236 30.1
HanXRQChr15g0467691 Helianthus annuus HOM05D002364 ORTHO05D002540 1.8e-10 70.5 216 33.8
Oeu039672.2 Olea europaea HOM05D002364 ORTHO05D002540 1.8e-10 70.5 220 32.7
PSO210G6351 Papaver somniferum HOM05D002364 ORTHO05D002540 2.4e-10 70.1 231 31.6
CAN.G1855.1 Capsicum annuum HOM05D002364 ORTHO05D002540 3.1e-10 69.7 90 47.8
CiPaw.04G187900 Carya illinoinensis HOM05D002364 ORTHO05D002540 3.1e-10 69.7 218 32.1
Gohir.A07G149900 Gossypium hirsutum HOM05D002364 ORTHO05D002540 3.1e-10 69.7 227 30.8
HanXRQChr10g0280811 Helianthus annuus HOM05D002364 ORTHO05D002540 3.1e-10 69.7 238 33.2
Lj5g0013714 Lotus japonicus HOM05D002364 ORTHO05D002540 3.1e-10 69.7 216 31.0
Solyc06g008340.4 Solanum lycopersicum HOM05D002364 ORTHO05D002540 3.1e-10 69.7 214 33.6
Lsat_1_v5_gn_9_10500 Lactuca sativa HOM05D002364 ORTHO05D002540 4.1e-10 69.3 216 33.8
PSO832G3897 Papaver somniferum HOM05D002364 ORTHO05D002540 4.1e-10 69.3 231 31.6
Ciclev10021562m.g Citrus clementina HOM05D002364 ORTHO05D002540 5.3e-10 68.9 88 48.9
MSTRG.18329 Avicennia marina HOM05D002364 ORTHO05D002540 7.0e-10 68.6 221 32.6
A08p37160 Brassica napus HOM05D002403 ORTHO05D002724 9.1e-10 68.2 214 33.2
BolC8t46881H Brassica oleracea HOM05D002364 ORTHO05D002540 9.1e-10 68.2 218 33.9
MELO3C012869.2 Cucumis melo HOM05D002364 ORTHO05D002540 9.1e-10 68.2 224 30.8
CsaV3_3G022120 Cucumis sativus L. HOM05D002364 ORTHO05D002540 9.1e-10 68.2 224 30.8
Rhsim13G0036200 Rhododendron simsii HOM05D002364 ORTHO05D002540 9.1e-10 68.2 219 32.0
arahy.Tifrunner.gnm1.ann1.S0A29X Arachis hypogaea HOM05D002364 ORTHO05D002540 1.2e-09 67.8 217 33.2
BraA08t35616Z Brassica rapa HOM05D002364 ORTHO05D002540 2.0e-09 67.0 221 33.5
unitig_8.g3736 Utricularia gibba HOM05D002364 ORTHO05D002540 2.0e-09 67.0 217 31.3
arahy.Tifrunner.gnm1.ann1.47VIJ3 Arachis hypogaea HOM05D002364 ORTHO05D002540 2.7e-09 66.6 217 32.7
Ca_09671_v3 Cicer arietinum L. HOM05D002364 ORTHO05D002540 2.7e-09 66.6 216 30.1
Actinidia37518 Actinidia chinensis HOM05D002364 ORTHO05D002540 3.5e-09 66.2 125 36.0
Psat6g054200 Pisum sativum HOM05D002364 ORTHO05D002540 3.5e-09 66.2 216 30.1
GSVIVG01028358001 Vitis vinifera HOM05D002364 ORTHO05D002540 3.5e-09 66.2 212 32.1
Hma1.2p1_0583F.1_g183020 Hydrangea macrophylla HOM05D002364 ORTHO05D022603 4.5e-09 65.9 111 41.4
Os10g0476000 Oryza sativa ssp. japonica HOM05D002364 ORTHO05D002540 4.5e-09 65.9 217 31.8
C08p00830 Brassica napus HOM05D002403 ORTHO05D002724 5.9e-09 65.5 217 32.7
CDE04G0285 Ceratophyllum demersum HOM05D002364 ORTHO05D002540 7.7e-09 65.1 212 33.0
MSTRG.21483 Avicennia marina HOM05D002364 ORTHO05D002540 1.0e-08 64.7 221 30.8
Sed0018557 Sechium edule HOM05D002364 ORTHO05D002540 1.0e-08 64.7 216 30.6
VMungo0720G3189 Vigna mungo HOM05D002364 ORTHO05D002540 1.7e-08 63.9 217 30.4
HPP92_008551 Vanilla planifolia HOM05D002364 ORTHO05D002540 2.2e-08 63.5 82 47.6
HPP92_008595 Vanilla planifolia HOM05D002364 ORTHO05D002540 2.2e-08 63.5 82 47.6
AUR62011857 Chenopodium quinoa HOM05D002364 ORTHO05D002540 2.9e-08 63.2 229 30.1
Glyma.13G124500 Glycine max HOM05D002364 ORTHO05D002540 2.9e-08 63.2 90 44.4
Lalb_Chr02g0152561 Lupinus albus HOM05D002364 ORTHO05D002540 2.9e-08 63.2 210 30.0
Phvul.007G191700 Phaseolus vulgaris HOM05D002364 ORTHO05D002540 2.9e-08 63.2 217 30.4
CDE07G2052 Ceratophyllum demersum HOM05D002364 ORTHO05D002540 3.8e-08 62.8 82 47.6
Aa31LG5G3150 Aethionema arabicum HOM05D002364 ORTHO05D002540 5.0e-08 62.4 214 31.3
Hund09609 Selenicereus undatus HOM05D002364 ORTHO05D002540 5.0e-08 62.4 233 29.2
Lalb_Chr21g0313971 Lupinus albus HOM05D002364 ORTHO05D002540 6.5e-08 62.0 89 42.7
AUR62024702 Chenopodium quinoa HOM05D002364 ORTHO05D002540 1.5e-07 60.8 211 29.9
Zm00001eb221890 Zea mays HOM05D002364 ORTHO05D002540 1.5e-07 60.8 210 30.5
Medtr1g069765 Medicago truncatula HOM05D002364 ORTHO05D002540 2.5e-07 60.1 88 39.8
Sed0010821 Sechium edule HOM05D002364 ORTHO05D002540 2.5e-07 60.1 221 29.0
TPR.G5923 Trifolium pratense HOM05D002364 ORTHO05D002540 3.2e-07 59.7 112 35.7
C05p02250 Brassica napus HOM05D003167 ORTHO05D003929 4.2e-07 59.3 201 30.8
BolC5t29002H Brassica oleracea HOM05D002364 ORTHO05D002540 4.2e-07 59.3 201 30.8
Cfa002444 Carpinus fangiana HOM05D002364 ORTHO05D002540 4.2e-07 59.3 92 42.4
EL10As5g23478 Beta vulgaris HOM05D002364 ORTHO05D002540 5.5e-07 58.9 208 29.8
Haze_24665 Corylus avellana HOM05D002364 ORTHO05D002540 1.2e-06 57.8 218 30.3
Thhalv10003361m.g Eutrema salsugineum HOM05D002364 ORTHO05D002540 1.2e-06 57.8 191 31.9
Oeu039147.1 Olea europaea HOM05D002364 ORTHO05D002540 1.2e-06 57.8 174 30.5
Migut.D00440 Erythranthe guttata HOM05D002364 ORTHO05D002540 1.6e-06 57.4 241 29.5
TWI12G0280 Tripterygium wilfordii HOM05D002364 ORTHO05D002540 1.6e-06 57.4 207 31.9
A10p02430 Brassica napus HOM05D003167 ORTHO05D003929 2.7e-06 56.6 201 31.3
BraA10t42512Z Brassica rapa HOM05D002364 ORTHO05D002540 2.7e-06 56.6 201 31.3
BcaC05g24487 Brassica carinata HOM05D002364 ORTHO05D002540 4.7e-06 55.8 202 30.7
Eucgr.K03254 Eucalyptus grandis HOM05D002364 ORTHO05D002540 4.7e-06 55.8 91 40.7
PGSC0003DMG402025510 Solanum tuberosum HOM05D002364 ORTHO05D002540 4.7e-06 55.8 168 33.3
BcaC05g24490 Brassica carinata HOM05D002364 ORTHO05D002540 6.1e-06 55.5 167 31.7


User provided reference genes

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