Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G2784 Fragaria x ananassa HOM05D007489 ORTHO05D008037 0.0e+00 1649.4 906 100.0
FAN08G0692 Fragaria x ananassa HOM05D007489 ORTHO05D008037 0.0e+00 1533.1 888 95.8
FvH4_5g26040 Fragaria vesca HOM05D007489 ORTHO05D008037 0.0e+00 1503.4 888 93.0
FAN18G0613 Fragaria x ananassa HOM05D007489 ORTHO05D008037 0.0e+00 1473.0 888 93.7
FAN13G1982 Fragaria x ananassa HOM05D007489 ORTHO05D008037 0.0e+00 1392.9 973 82.6
RcHm_v2.0_Chr7g0216741 Rosa chinensis HOM05D007489 ORTHO05D008037 2.3e-301 1038.9 841 72.9
RcHm_v2.0_Chr7g0215591 Rosa chinensis HOM05D007489 ORTHO05D008037 2.0e-292 1009.2 824 72.8
Prupe.4G057700 Prunus persica HOM05D007489 ORTHO05D008037 1.5e-194 684.1 834 53.0
MD10G1283800 Malus domestica HOM05D007489 ORTHO05D008037 1.3e-187 661.0 868 50.1
MD05G1304800 Malus domestica HOM05D007489 ORTHO05D008037 1.0e-91 342.4 548 44.7
Sabra11G0045300 Salix brachista HOM05D007489 ORTHO05D008037 3.0e-91 340.9 836 36.1
CSS0034374 Camellia sinensis var. sinensis HOM05D007489 ORTHO05D008037 5.9e-87 326.6 869 34.6
TAR627G1016 Trochodendron aralioides HOM05D007489 ORTHO05D008037 5.9e-87 326.6 902 33.4
Haze_06275 Corylus avellana HOM05D007489 ORTHO05D008037 1.4e-83 315.5 886 33.7
Dinv40650 Davidia involucrata HOM05D007489 ORTHO05D008037 1.4e-83 315.5 845 33.4
Duzib192G0524 Durio zibethinus HOM05D007489 ORTHO05D008037 4.4e-82 310.5 894 33.3
Potri.011G063500 Populus trichocarpa HOM05D007489 ORTHO05D008037 2.0e-79 301.6 823 34.9
Duzib235G0638 Durio zibethinus HOM05D007489 ORTHO05D008037 1.7e-78 298.5 857 32.0
Thecc.06G175600 Theobroma cacao HOM05D007489 ORTHO05D008037 8.6e-78 296.2 830 32.2
Rhsim02G0140400 Rhododendron simsii HOM05D007489 ORTHO05D008037 5.5e-77 293.5 959 30.9
CANSAT54G0123 Cannabis sativa HOM05D007489 ORTHO05D008037 3.1e-72 277.7 898 31.4
Glyma.07G204500 Glycine max HOM05D007489 ORTHO05D008037 4.5e-71 273.9 843 32.0
Gohir.D10G031400 Gossypium hirsutum HOM05D007489 ORTHO05D008037 1.0e-70 272.7 858 32.3
Manes.16G035700 Manihot esculenta HOM05D007489 ORTHO05D008037 2.3e-70 271.6 1004 30.4
Nn1g09012 Nelumbo nucifera HOM05D007489 ORTHO05D008037 2.9e-70 271.2 836 32.3
Lj4g0021888 Lotus japonicus HOM05D007489 ORTHO05D008037 1.6e-68 265.4 831 31.5
TPR.G16271 Trifolium pratense HOM05D007489 ORTHO05D008037 6.1e-68 263.5 869 31.2
ClCG01G023550 Citrullus lanatus HOM05D007489 ORTHO05D008037 1.2e-66 259.2 838 31.9
Phvul.003G057800 Phaseolus vulgaris HOM05D007489 ORTHO05D008037 1.1e-64 252.7 865 30.5
Hma1.2p1_0155F.1_g068400 Hydrangea macrophylla HOM05D007489 ORTHO05D008037 4.1e-64 250.8 847 30.5
PGR004G0633 Punica granatum HOM05D007489 ORTHO05D008037 4.1e-64 250.8 845 30.3
MELO3C007230.2 Cucumis melo HOM05D007489 ORTHO05D008037 5.4e-64 250.4 818 31.1
arahy.Tifrunner.gnm1.ann1.S0ULK2 Arachis hypogaea HOM05D007489 ORTHO05D008037 1.6e-63 248.8 843 31.0
CiPaw.10G057000 Carya illinoinensis HOM05D007489 ORTHO05D008037 1.5e-61 242.3 442 40.5
Medtr4g087875 Medicago truncatula HOM05D007489 ORTHO05D008037 2.5e-61 241.5 861 30.7
Gorai.011G033000 Gossypium raimondii HOM05D007489 ORTHO05D008037 7.3e-61 240.0 857 30.7
Gohir.A10G030500 Gossypium hirsutum HOM05D007489 ORTHO05D008037 3.6e-60 237.7 818 34.2
Sed0003654 Sechium edule HOM05D007489 ORTHO05D008037 6.2e-60 236.9 822 30.4
Lj1A1196T41 Lonicera japonica HOM05D007489 ORTHO05D008037 1.4e-59 235.7 806 30.1
Aqoxy5G02160 Aquilegia oxysepala HOM05D007489 ORTHO05D008037 1.4e-56 225.7 854 30.0
ECA234G3308 Erigeron canadensis HOM05D007489 ORTHO05D008037 3.9e-54 217.6 867 28.1
arahy.Tifrunner.gnm1.ann1.X1E7Z2 Arachis hypogaea HOM05D007489 ORTHO05D008037 3.4e-50 204.5 828 28.9
Ca_26049_v3 Cicer arietinum L. HOM05D007489 ORTHO05D008037 3.7e-49 201.1 853 29.1
Sc05g0007220 Simmondsia chinensis HOM05D007489 ORTHO05D008037 3.7e-49 201.1 917 28.5
CAN.G79.55 Capsicum annuum HOM05D007489 ORTHO05D008037 1.1e-48 199.5 873 27.9
Lsat_1_v5_gn_4_50401 Lactuca sativa HOM05D007489 ORTHO05D008037 9.2e-48 196.4 847 28.2
Aa31LG6G1240 Aethionema arabicum HOM05D010718 ORTHO05D008037 7.8e-47 193.4 865 29.9
Thhalv10024499m.g Eutrema salsugineum HOM05D010718 ORTHO05D008037 1.3e-46 192.6 862 27.8
Nitab4.5_0001928g0060 Nicotiana tabacum HOM05D007489 ORTHO05D008037 2.3e-46 191.8 850 27.3
CsaV3_6G050690 Cucumis sativus L. HOM05D007489 ORTHO05D008037 9.5e-45 186.4 925 27.4
Sopen02g022090 Solanum pennellii HOM05D007489 ORTHO05D008037 5.2e-43 180.6 903 26.4
HanXRQChr11g0327141 Helianthus annuus HOM05D007489 ORTHO05D008037 2.0e-42 178.7 837 29.0
AL7G35790 Arabidopsis lyrata HOM05D010718 ORTHO05D008037 1.3e-41 176.0 871 28.7
Atru.chr10.1727 Acer truncatum HOM05D007489 ORTHO05D008037 3.8e-41 174.5 267 44.9
AT4G18490 Arabidopsis thaliana HOM05D010718 ORTHO05D008037 1.9e-40 172.2 880 28.6
CARHR225330 Cardamine hirsuta HOM05D010718 ORTHO05D008037 2.7e-39 168.3 910 26.7
Lalb_Chr16g0384211 Lupinus albus HOM05D007489 ORTHO05D008037 1.7e-38 165.6 572 30.4
BcaC06g30581 Brassica carinata HOM05D010718 ORTHO05D008037 5.1e-38 164.1 890 26.9
PSO063G1126 Papaver somniferum HOM05D007489 ORTHO05D008037 3.3e-37 161.4 995 26.2
Sp7g15530 Schrenkiella parvula HOM05D010718 ORTHO05D008037 5.6e-37 160.6 905 28.0
A03p51330 Brassica napus HOM05D010718 ORTHO05D008037 9.6e-37 159.8 891 27.9
QL05p044409 Quercus lobata HOM05D007489 ORTHO05D008037 1.4e-35 156.0 272 40.1
Migut.J01535 Erythranthe guttata HOM05D007489 ORTHO05D008037 2.4e-35 155.2 805 25.3
COL.COLO4_31347 Corchorus olitorius HOM05D007489 ORTHO05D008037 1.5e-34 152.5 959 24.2
Oeu041109.2 Olea europaea HOM05D007489 ORTHO05D008037 4.9e-33 147.5 938 24.9
MBI06_g31402_MAGBIO Magnolia biondii HOM05D007489 ORTHO05D008037 1.9e-32 145.6 598 27.6
AUR62036546 Chenopodium quinoa HOM05D007489 ORTHO05D008037 3.5e-31 141.4 865 26.6
VMungo0251G2273 Vigna mungo HOM05D007489 ORTHO05D008037 4.6e-31 141.0 573 27.7
EL10Ac8g20488 Beta vulgaris HOM05D007489 ORTHO05D008037 3.0e-30 138.3 908 26.5
BraA03t14214Z Brassica rapa HOM05D010718 ORTHO05D008037 3.0e-30 138.3 869 26.6
Carub.0007s2274 Capsella rubella HOM05D010718 ORTHO05D008037 5.6e-29 134.0 881 26.8
BcaNung02709 Brassica carinata HOM05D010718 ORTHO05D008037 7.3e-29 133.7 877 26.6
GSVIVG01021171001 Vitis vinifera HOM05D007489 ORTHO05D008037 2.1e-28 132.1 255 38.8
Os01g0755100 Oryza sativa ssp. japonica HOM05D007489 ORTHO05D008037 4.8e-28 131.0 841 25.9
BolC7t45475H Brassica oleracea HOM05D010718 ORTHO05D008037 4.0e-27 127.9 870 26.7
C07p49740 Brassica napus HOM05D010718 ORTHO05D008037 6.9e-27 127.1 869 26.7
MD05G1304700 Malus domestica HOM05D007489 ORTHO05D008037 1.2e-26 126.3 164 51.2
C01p12440 Brassica napus HOM05D010718 ORTHO05D008037 1.2e-23 116.3 922 26.0
A01p10500 Brassica napus HOM05D010718 ORTHO05D008037 3.5e-23 114.8 913 25.8
PGR004G2208 Punica granatum HOM05D007489 ORTHO05D008037 7.9e-23 113.6 102 60.8
Solyc02g077210.1 Solanum lycopersicum HOM05D007489 ORTHO05D008037 1.3e-22 112.8 232 36.2
BraA01t00996Z Brassica rapa HOM05D010718 ORTHO05D008037 5.1e-22 110.9 906 24.3
BolC1t01218H Brassica oleracea HOM05D010718 ORTHO05D008037 6.7e-22 110.5 905 26.1
Hund23951 Selenicereus undatus HOM05D007489 ORTHO05D008037 2.5e-21 108.6 454 27.3
Glyma.13G171600 Glycine max HOM05D007489 ORTHO05D008037 4.3e-21 107.8 289 31.1
Glyma.13G171550 Glycine max HOM05D007489 ORTHO05D008037 5.6e-21 107.5 149 45.0
Ciclev10017982m.g Citrus clementina HOM05D007489 ORTHO05D008037 7.4e-21 107.1 191 39.8
Cpa.g.sc7.37 Carica papaya HOM05D007489 ORTHO05D008037 9.6e-21 106.7 423 29.1
SalBow6G3268 Salvia bowleyana HOM05D007489 ORTHO05D008037 9.6e-21 106.7 881 25.5
SalBow6G6000 Salvia bowleyana HOM05D007489 ORTHO05D008037 9.6e-21 106.7 880 25.2
Peaxi162Scf00223g01419 Petunia axillaris HOM05D007489 ORTHO05D008037 4.8e-20 104.4 202 39.1
DCAR_004024 Daucus carota HOM05D007489 ORTHO05D008037 6.2e-20 104.0 323 33.1
MBI06_g31401_MAGBIO Magnolia biondii HOM05D007489 ORTHO05D008037 2.2e-17 95.5 148 41.2
Nitab4.5_0000376g0220 Nicotiana tabacum HOM05D007489 ORTHO05D008037 2.2e-17 95.5 843 22.5
Peaxi162Scf00223g01422 Petunia axillaris HOM05D007489 ORTHO05D008037 4.2e-16 91.3 76 63.2
HPP92_008016 Vanilla planifolia HOM05D007489 ORTHO05D008037 2.7e-15 88.6 141 41.8
FAN18G0578 Fragaria x ananassa HOM05D007489 ORTHO05D045794 4.6e-15 87.8 69 69.6
HPP92_007965 Vanilla planifolia HOM05D007489 ORTHO05D008037 1.3e-14 86.3 141 41.1
Zm00001eb152860 Zea mays HOM05D007489 ORTHO05D008037 3.9e-14 84.7 823 23.8
ATR0602G208 Amborella trichopoda HOM05D007489 ORTHO05D008037 1.5e-13 82.8 822 22.9
DCAR_007972 Daucus carota HOM05D007489 ORTHO05D008037 3.3e-13 81.6 77 55.8
PSO782G2467 Papaver somniferum HOM05D007489 ORTHO05D008037 3.3e-13 81.6 145 40.0
SEGI_30603 Sequoiadendron giganteum HOM05D007489 ORTHO05D008037 5.6e-13 80.9 165 33.3
unitig_0.g132 Utricularia gibba HOM05D007489 ORTHO05D008037 2.1e-12 79.0 97 46.4
SalBow2G2687 Salvia bowleyana HOM05D007489 ORTHO05D008037 6.2e-12 77.4 69 50.7
SalBow1G4805 Salvia bowleyana HOM05D007489 ORTHO05D008037 6.9e-11 73.9 69 49.3
arahy.Tifrunner.gnm1.ann1.8IS92U Arachis hypogaea HOM05D007489 ORTHO05D008037 4.5e-10 71.2 65 61.5
AUR62031141 Chenopodium quinoa HOM05D007489 ORTHO05D008037 1.7e-09 69.3 798 23.9
Aqoxy534s001 Aquilegia oxysepala HOM05D007489 ORTHO05D008037 2.9e-09 68.6 99 41.4
SGA_v2.0_scaffold66G22379 Striga asiatica HOM05D007489 ORTHO05D008037 1.4e-08 66.2 879 26.1
FvH4_5g25370 Fragaria vesca HOM05D007489 ORTHO05D045794 1.9e-08 65.9 54 61.1
SMO340G0226 Selaginella moellendorffii HOM05D029666 ORTHO05D008037 9.3e-08 63.5 60 51.7
SMO356G0683 Selaginella moellendorffii HOM05D029666 ORTHO05D008037 1.2e-07 63.2 60 51.7
Eucgr.D00548 Eucalyptus grandis HOM05D007489 ORTHO05D008037 1.0e-06 60.1 85 49.4


User provided reference genes

Program Settings