Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G2766 Fragaria x ananassa HOM05D005222 ORTHO05D006230 6.4e-38 160.2 79 100.0
FAN13G0479 Fragaria x ananassa HOM05D005222 ORTHO05D006230 6.0e-36 153.7 79 96.2
FAN08G1832 Fragaria x ananassa HOM05D005222 ORTHO05D006230 1.0e-35 152.9 79 94.9
FvH4_5g08990 Fragaria vesca HOM05D005222 ORTHO05D006230 7.3e-34 146.7 79 92.4
RcHm_v2.0_Chr7g0189291 Rosa chinensis HOM05D005222 ORTHO05D006230 1.2e-33 146.0 79 88.6
FAN18G1799 Fragaria x ananassa HOM05D005222 ORTHO05D006230 3.6e-33 144.4 86 87.2
MD06G1135800 Malus domestica HOM05D005222 ORTHO05D006230 2.2e-30 135.2 79 78.5
MD14G1151000 Malus domestica HOM05D005222 ORTHO05D006230 3.8e-30 134.4 79 78.5
Sc04g0000390 Simmondsia chinensis HOM05D005222 ORTHO05D006230 1.4e-29 132.5 79 77.2
Prupe.5G146200 Prunus persica HOM05D005222 ORTHO05D006230 1.9e-29 132.1 79 77.2
Sc22g0003810 Simmondsia chinensis HOM05D005222 ORTHO05D006230 7.1e-29 130.2 79 75.9
CAN.G65.111 Capsicum annuum HOM05D005222 ORTHO05D006230 2.7e-28 128.3 79 72.2
Cfa018742 Carpinus fangiana HOM05D005222 ORTHO05D006230 7.8e-28 126.7 79 73.4
Haze_07194 Corylus avellana HOM05D005222 ORTHO05D006230 1.3e-27 125.9 79 73.4
Peaxi162Scf01064g00238 Petunia axillaris HOM05D005222 ORTHO05D006230 1.3e-27 125.9 79 69.6
HanXRQChr09g0273701 Helianthus annuus HOM05D005222 ORTHO05D006230 2.3e-27 125.2 79 70.9
Solyc06g072600.3 Solanum lycopersicum HOM05D005222 ORTHO05D006230 3.9e-27 124.4 79 70.9
Sopen06g028950 Solanum pennellii HOM05D005222 ORTHO05D006230 3.9e-27 124.4 79 70.9
EL10Ac5g11344 Beta vulgaris HOM05D005222 ORTHO05D006230 5.1e-27 124.0 79 72.2
THA.LOC104811566 Tarenaya hassleriana HOM05D005222 ORTHO05D006230 8.7e-27 123.2 79 70.9
CiPaw.11G003300 Carya illinoinensis HOM05D005222 ORTHO05D006230 2.5e-26 121.7 79 69.6
DCAR_016362 Daucus carota HOM05D005222 ORTHO05D006230 3.3e-26 121.3 79 67.1
ECA232G5061 Erigeron canadensis HOM05D005222 ORTHO05D006230 5.6e-26 120.6 79 68.4
Aa31LG3G7230 Aethionema arabicum HOM05D005222 ORTHO05D006230 7.3e-26 120.2 79 69.6
PGR083G1056 Punica granatum HOM05D005222 ORTHO05D006230 7.3e-26 120.2 78 70.5
Eucgr.B00077 Eucalyptus grandis HOM05D005222 ORTHO05D006230 9.6e-26 119.8 79 69.6
Potri.012G103400 Populus trichocarpa HOM05D005222 ORTHO05D006230 9.6e-26 119.8 79 67.1
Lsat_1_v5_gn_4_83361 Lactuca sativa HOM05D005222 ORTHO05D006230 1.2e-25 119.4 79 67.1
Atru.chr6.1879 Acer truncatum HOM05D005222 ORTHO05D006230 1.6e-25 119.0 75 72.0
Hund02474 Selenicereus undatus HOM05D005222 ORTHO05D006230 1.6e-25 119.0 79 69.6
CANSAT80G0210 Cannabis sativa HOM05D005222 ORTHO05D006230 2.1e-25 118.6 77 66.2
SalBow5G1462 Salvia bowleyana HOM05D005222 ORTHO05D006230 2.8e-25 118.2 76 68.4
Sp6g12920 Schrenkiella parvula HOM05D005222 ORTHO05D006230 2.8e-25 118.2 75 70.7
Dinv23190 Davidia involucrata HOM05D005222 ORTHO05D006230 3.6e-25 117.9 79 67.1
Migut.D01295 Erythranthe guttata HOM05D005222 ORTHO05D006230 3.6e-25 117.9 76 68.4
Nn3g16353 Nelumbo nucifera HOM05D005222 ORTHO05D006230 4.7e-25 117.5 79 65.8
TWI39G0019 Tripterygium wilfordii HOM05D005222 ORTHO05D006230 4.7e-25 117.5 79 67.1
unitig_0.g1255 Utricularia gibba HOM05D005222 ORTHO05D006230 4.7e-25 117.5 76 68.4
Ca_16071_v3 Cicer arietinum L. HOM05D005222 ORTHO05D006230 6.2e-25 117.1 79 70.9
Glyma.04G198900 Glycine max HOM05D005222 ORTHO05D006230 6.2e-25 117.1 79 72.2
Lalb_Chr08g0237411 Lupinus albus HOM05D005222 ORTHO05D006230 6.2e-25 117.1 79 69.6
Phvul.009G163100 Phaseolus vulgaris HOM05D005222 ORTHO05D006230 8.1e-25 116.7 79 72.2
Dinv11207 Davidia involucrata HOM05D005222 ORTHO05D006230 1.1e-24 116.3 79 65.8
Nitab4.5_0001464g0100 Nicotiana tabacum HOM05D005222 ORTHO05D006230 1.1e-24 116.3 79 64.6
TWI23G0048 Tripterygium wilfordii HOM05D005222 ORTHO05D006230 1.1e-24 116.3 79 65.8
Hma1.2p1_0168F.1_g074260 Hydrangea macrophylla HOM05D005222 ORTHO05D006230 1.4e-24 115.9 79 63.3
Potri.015G102000 Populus trichocarpa HOM05D005222 ORTHO05D006230 1.4e-24 115.9 79 65.8
QL05p049336 Quercus lobata HOM05D005222 ORTHO05D006230 1.8e-24 115.5 78 67.9
QL10p001732 Quercus lobata HOM05D005222 ORTHO05D006230 1.8e-24 115.5 78 67.9
Rhsim08G0194200 Rhododendron simsii HOM05D005222 ORTHO05D006230 1.8e-24 115.5 77 66.2
Carub.0008s1080 Capsella rubella HOM05D005222 ORTHO05D006230 2.4e-24 115.2 75 65.3
Peaxi162Scf00516g00032 Petunia axillaris HOM05D005222 ORTHO05D006230 2.4e-24 115.2 80 65.0
Sabra15G0122200 Salix brachista HOM05D005222 ORTHO05D006230 2.4e-24 115.2 79 64.6
CsaV3_1G000290 Cucumis sativus L. HOM05D005222 ORTHO05D006230 3.1e-24 114.8 75 69.3
CAN.G758.13 Capsicum annuum HOM05D005222 ORTHO05D006230 4.0e-24 114.4 79 63.3
Glyma.06G166600 Glycine max HOM05D005222 ORTHO05D006230 4.0e-24 114.4 79 69.6
MBI07_g24748_MAGBIO Magnolia biondii HOM05D005222 ORTHO05D006230 4.0e-24 114.4 79 64.6
Rhsim12G0178200 Rhododendron simsii HOM05D005222 ORTHO05D006230 4.0e-24 114.4 77 67.5
ClCG06G018150 Citrullus lanatus HOM05D005222 ORTHO05D006230 5.2e-24 114.0 77 66.2
AUR62029544 Chenopodium quinoa HOM05D005222 ORTHO05D006230 6.9e-24 113.6 72 69.4
AUR62034814 Chenopodium quinoa HOM05D005222 ORTHO05D006230 6.9e-24 113.6 72 69.4
Lj1g0004473 Lotus japonicus HOM05D005222 ORTHO05D006230 6.9e-24 113.6 79 67.1
Manes.14G047400 Manihot esculenta HOM05D005222 ORTHO05D006230 6.9e-24 113.6 79 63.3
Sopen03g028390 Solanum pennellii HOM05D005222 ORTHO05D006230 6.9e-24 113.6 80 66.2
CARHR232420 Cardamine hirsuta HOM05D005222 ORTHO05D006230 9.0e-24 113.2 78 67.9
Ciclev10033230m.g Citrus clementina HOM05D005222 ORTHO05D006230 9.0e-24 113.2 79 64.6
Manes.06G123800 Manihot esculenta HOM05D005222 ORTHO05D006230 9.0e-24 113.2 79 64.6
SEGI_36916 Sequoiadendron giganteum HOM05D005222 ORTHO05D006230 9.0e-24 113.2 77 66.2
PGSC0003DMG400004338 Solanum tuberosum HOM05D005222 ORTHO05D006230 9.0e-24 113.2 80 66.2
Actinidia25544 Actinidia chinensis HOM05D005222 ORTHO05D006230 1.2e-23 112.8 77 63.6
CDE06G2816 Ceratophyllum demersum HOM05D005222 ORTHO05D006230 1.2e-23 112.8 79 64.6
Gohir.A12G192500 Gossypium hirsutum HOM05D005222 ORTHO05D006230 1.2e-23 112.8 79 62.0
Medtr3g098820 Medicago truncatula HOM05D005222 ORTHO05D006230 1.2e-23 112.8 79 68.4
AT5G50810 Arabidopsis thaliana HOM05D005222 ORTHO05D006230 1.5e-23 112.5 74 64.9
CARHR257460 Cardamine hirsuta HOM05D005222 ORTHO05D006230 1.5e-23 112.5 75 66.7
PGSC0003DMG400027040 Solanum tuberosum HOM05D005222 ORTHO05D006230 1.5e-23 112.5 101 55.4
Thecc.03G136000 Theobroma cacao HOM05D005222 ORTHO05D006230 1.5e-23 112.5 79 65.8
CDE02G1328 Ceratophyllum demersum HOM05D005222 ORTHO05D006230 2.6e-23 111.7 79 64.6
Gohir.D12G194600 Gossypium hirsutum HOM05D005222 ORTHO05D006230 3.4e-23 111.3 79 60.8
Lj4g0026334 Lotus japonicus HOM05D005222 ORTHO05D006230 3.4e-23 111.3 79 65.8
Nitab4.5_0011312g0030 Nicotiana tabacum HOM05D005222 ORTHO05D006230 3.4e-23 111.3 79 60.8
GSVIVG01008600001 Vitis vinifera HOM05D005222 ORTHO05D006230 4.4e-23 110.9 76 65.8
PSO063G7191 Papaver somniferum HOM05D005222 ORTHO05D006230 5.8e-23 110.5 74 67.6
PSO782G1904 Papaver somniferum HOM05D005222 ORTHO05D006230 5.8e-23 110.5 74 67.6
Solyc03g097640.3 Solanum lycopersicum HOM05D005222 ORTHO05D006230 1.3e-22 109.4 76 65.8
Nitab4.5_0000033g0050 Nicotiana tabacum HOM05D005222 ORTHO05D006230 1.7e-22 109.0 80 65.0
Duzib205G1725 Durio zibethinus HOM05D005222 ORTHO05D006230 2.2e-22 108.6 79 62.0
Zm00001eb036900 Zea mays HOM05D005222 ORTHO05D006230 2.2e-22 108.6 70 70.0
GSVIVG01033034001 Vitis vinifera HOM05D005222 ORTHO05D006230 2.9e-22 108.2 79 62.0
TAR374G1676 Trochodendron aralioides HOM05D005222 ORTHO05D006230 3.8e-22 107.8 79 60.8
A03p16580 Brassica napus HOM05D005222 ORTHO05D006230 8.4e-22 106.7 76 63.2
C03p19510 Brassica napus HOM05D005222 ORTHO05D006230 8.4e-22 106.7 76 63.2
BolC3t14332H Brassica oleracea HOM05D005222 ORTHO05D006230 8.4e-22 106.7 76 63.2
BraA03t10945Z Brassica rapa HOM05D005222 ORTHO05D006230 8.4e-22 106.7 76 63.2
Cc04_g09830 Coffea canephora HOM05D005222 ORTHO05D006230 8.4e-22 106.7 79 62.0
TPR.G21582 Trifolium pratense HOM05D005222 ORTHO05D006230 1.1e-21 106.3 79 60.8
ATR0582G313 Amborella trichopoda HOM05D005222 ORTHO05D006230 1.4e-21 105.9 77 61.0
Thhalv10015178m.g Eutrema salsugineum HOM05D005222 ORTHO05D006230 1.4e-21 105.9 75 62.7
arahy.Tifrunner.gnm1.ann1.122S7D Arachis hypogaea HOM05D005222 ORTHO05D006230 2.4e-21 105.1 79 62.0
arahy.Tifrunner.gnm1.ann1.5QWD0G Arachis hypogaea HOM05D005222 ORTHO05D006230 3.2e-21 104.8 79 62.0
Duzib084G0042 Durio zibethinus HOM05D005222 ORTHO05D006230 3.2e-21 104.8 76 63.2
CSS0012412 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 4.2e-21 104.4 61 73.8
Gorai.008G209300 Gossypium raimondii HOM05D005222 ORTHO05D006230 5.4e-21 104.0 65 70.8
Os08g0535600 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 5.4e-21 104.0 66 69.7
VMungo0464G1435 Vigna mungo HOM05D005222 ORTHO05D006230 5.4e-21 104.0 60 80.0
BcaC09g50823 Brassica carinata HOM05D005222 ORTHO05D006230 7.1e-21 103.6 79 59.5
C01p20320 Brassica napus HOM05D005222 ORTHO05D006230 7.1e-21 103.6 79 59.5
BolC1t01961H Brassica oleracea HOM05D005222 ORTHO05D006230 7.1e-21 103.6 79 59.5
CSS0000670 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 1.2e-20 102.8 61 72.1
TAR629G0657 Trochodendron aralioides HOM05D005222 ORTHO05D006230 1.2e-20 102.8 63 71.4
BcaNung03992 Brassica carinata HOM05D005222 ORTHO05D006230 1.6e-20 102.4 79 58.2
Mapoly0022s0111 Marchantia polymorpha HOM05D005222 ORTHO05D006230 1.6e-20 102.4 78 59.0
Sabra12G0075900 Salix brachista HOM05D005222 ORTHO05D006230 2.1e-20 102.1 65 69.2
vmacro16739 Vaccinium macrocarpon HOM05D005222 ORTHO05D006230 2.1e-20 102.1 64 71.9
MELO3C026182.2 Cucumis melo HOM05D005222 ORTHO05D006230 3.5e-20 101.3 59 76.3
BraA01t01568Z Brassica rapa HOM05D005222 ORTHO05D006230 4.6e-20 100.9 79 57.0
ClCG04G004850 Citrullus lanatus HOM05D005222 ORTHO05D006230 1.0e-19 99.8 59 74.6
A01p16290 Brassica napus HOM05D005222 ORTHO05D006230 1.7e-19 99.0 79 55.7
Sc07g0003580 Simmondsia chinensis HOM05D005222 ORTHO05D006230 1.7e-19 99.0 79 54.4
CSS0034357 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 3.0e-19 98.2 67 62.7
Glyma.05G202400 Glycine max HOM05D005222 ORTHO05D006230 3.0e-19 98.2 79 60.8
Pp3c22_9040 Physcomitrium patens HOM05D005222 ORTHO05D006230 3.9e-19 97.8 69 59.4
Zm00001eb175490 Zea mays HOM05D005222 ORTHO05D006230 3.9e-19 97.8 61 68.9
COL.COLO4_16662 Corchorus olitorius HOM05D005222 ORTHO05D006230 1.1e-18 96.3 57 75.4
Aqoxy3G01691 Aquilegia oxysepala HOM05D005222 ORTHO05D006230 4.3e-18 94.4 72 56.9
ATR1096G067 Amborella trichopoda HOM05D005222 ORTHO05D006230 7.3e-18 93.6 75 53.3
Psat5g053520 Pisum sativum HOM05D001135 ORTHO05D006230 9.6e-18 93.2 54 74.1
C06p12810 Brassica napus HOM05D005222 ORTHO05D006230 2.1e-17 92.0 65 64.6
CAN.G101.22 Capsicum annuum HOM05D005222 ORTHO05D006230 2.1e-17 92.0 55 72.7
MBI13_g38964_MAGBIO Magnolia biondii HOM05D005222 ORTHO05D006230 4.8e-17 90.9 79 50.6
SMO356G0192 Selaginella moellendorffii HOM05D005222 ORTHO05D006230 4.8e-17 90.9 60 63.3
BcaC08g43896 Brassica carinata HOM05D005222 ORTHO05D006230 6.2e-17 90.5 63 65.1
Os12g0128600 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 6.2e-17 90.5 72 54.2
AL8G24980 Arabidopsis lyrata HOM05D005222 ORTHO05D006230 8.1e-17 90.1 53 69.8
Pp3c18_15660 Physcomitrium patens HOM05D005222 ORTHO05D006230 8.1e-17 90.1 63 61.9
Os11g0131700 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 1.4e-16 89.4 72 52.8
Zm00001eb163550 Zea mays HOM05D005222 ORTHO05D006230 2.4e-16 88.6 74 50.0
FvH4_5g07110 Fragaria vesca HOM05D005222 ORTHO05D006230 3.1e-16 88.2 67 64.2
Aqoxy5G03239 Aquilegia oxysepala HOM05D005222 ORTHO05D006230 1.2e-15 86.3 67 52.2
HPP92_001283 Vanilla planifolia HOM05D005222 ORTHO05D006230 7.6e-15 83.6 65 55.4
Nn7g37129 Nelumbo nucifera HOM05D005222 ORTHO05D006230 9.9e-15 83.2 67 53.7
FAN08G2230 Fragaria x ananassa HOM05D005222 ORTHO05D006230 6.4e-14 80.5 67 58.2
MCO14G257 Micromonas commoda HOM05D005222 ORTHO05D006230 1.3e-09 66.2 71 45.1
PRCOL_00002805 Prasinoderma coloniale HOM05D003727 ORTHO05D034196 2.8e-09 65.1 75 42.7
AagrBONN_evm.TU.Sc2ySwM_362.856 Anthoceros agrestis HOM05D005222 ORTHO05D006230 2.0e-07 58.9 48 54.2


User provided reference genes

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