Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G2702 Fragaria x ananassa HOM05D010931 ORTHO05D013603 4.7e-271 937.2 443 100.0
FvH4_5g03600 Fragaria vesca HOM05D010931 ORTHO05D013603 8.9e-238 826.6 408 96.6
FAN18G3160 Fragaria x ananassa HOM05D010931 ORTHO05D013603 2.2e-236 822.0 408 96.1
FAN13G2642 Fragaria x ananassa HOM05D010931 ORTHO05D013603 1.4e-222 776.2 455 85.5
FAN13G2892 Fragaria x ananassa HOM05D010931 ORTHO05D013603 1.7e-212 742.7 457 82.3
FAN08G1863 Fragaria x ananassa HOM05D010931 ORTHO05D013603 6.4e-204 714.1 406 86.5
FAN04G1211 Fragaria x ananassa HOM05D010931 ORTHO05D013603 1.3e-193 679.9 408 82.4
FvH4_3g28140 Fragaria vesca HOM05D010931 ORTHO05D013603 3.1e-174 615.5 404 77.2
FAN11G4008 Fragaria x ananassa HOM05D010931 ORTHO05D013603 1.1e-171 607.1 404 76.5
FAN04G3148 Fragaria x ananassa HOM05D010931 ORTHO05D013603 6.0e-125 451.8 369 66.1
FAN04G3014 Fragaria x ananassa HOM05D010931 ORTHO05D013603 4.3e-123 445.7 362 66.9
FAN18G0417 Fragaria x ananassa HOM05D010931 ORTHO05D013603 1.9e-118 430.3 411 58.9
FAN21G3628 Fragaria x ananassa HOM05D010931 ORTHO05D013603 1.7e-103 380.6 398 54.8
FAN25G2077 Fragaria x ananassa HOM05D010931 ORTHO05D013603 2.6e-56 223.8 261 50.2
FAN16G2576 Fragaria x ananassa HOM05D010931 ORTHO05D013603 1.3e-47 194.9 290 43.4
FAN02G2364 Fragaria x ananassa HOM05D011252 ORTHO05D029353 8.3e-34 149.1 434 31.6
FvH4_6g16971 Fragaria vesca HOM05D011252 ORTHO05D029353 1.6e-32 144.8 448 30.6
FAN14G0447 Fragaria x ananassa HOM05D011252 ORTHO05D029353 1.5e-30 138.3 446 29.1
FvH4_6g16960 Fragaria vesca HOM05D011252 ORTHO05D029353 2.5e-30 137.5 446 29.1
FAN02G0730 Fragaria x ananassa HOM05D011252 ORTHO05D013603 1.4e-25 121.7 318 30.2
FvH4_6g22212 Fragaria vesca HOM05D010931 ORTHO05D016562 9.1e-25 119.0 335 31.0
FvH4_6g37591 Fragaria vesca HOM05D006368 ORTHO05D006739 1.7e-23 114.8 398 26.6
FvH4_6g22332 Fragaria vesca HOM05D010931 ORTHO05D016562 2.3e-23 114.4 324 32.7
RcHm_v2.0_Chr2g0166201 Rosa chinensis HOM05D006368 ORTHO05D006739 3.8e-23 113.6 426 25.6
RcHm_v2.0_Chr3g0476221 Rosa chinensis HOM05D024214 ORTHO05D016562 5.0e-23 113.2 376 32.2
FAN14G1492 Fragaria x ananassa HOM05D006368 ORTHO05D006739 6.6e-23 112.8 406 29.3
FvH4_6g47130 Fragaria vesca HOM05D006368 ORTHO05D006739 1.9e-22 111.3 405 29.1
FvH4_6g47140 Fragaria vesca HOM05D006368 ORTHO05D006739 1.4e-20 105.1 424 25.9
FAN14G3177 Fragaria x ananassa HOM05D011252 ORTHO05D002975 1.8e-20 104.8 437 25.2
FAN14G5568 Fragaria x ananassa HOM05D006368 ORTHO05D006739 1.8e-20 104.8 424 25.5
FAN08G1982 Fragaria x ananassa HOM05D010931 ORTHO05D013603 3.0e-20 104.0 61 78.7
FvH4_6g21331 Fragaria vesca HOM05D024214 ORTHO05D016562 4.0e-20 103.6 401 29.4
TAR626G0819 Trochodendron aralioides HOM05D000151 ORTHO05D000074 5.2e-20 103.2 379 23.7
FAN02G1276 Fragaria x ananassa HOM05D005035 ORTHO05D006141 1.5e-19 101.7 365 25.2
RcHm_v2.0_Chr2g0153831 Rosa chinensis HOM05D006368 ORTHO05D006739 3.4e-19 100.5 428 25.7
RcHm_v2.0_Chr5g0067081 Rosa chinensis HOM05D006368 ORTHO05D006739 4.4e-19 100.1 434 24.7
RcHm_v2.0_Chr4g0430971 Rosa chinensis HOM05D006368 ORTHO05D006739 5.7e-19 99.8 433 24.5
Dinv43794 Davidia involucrata HOM05D000151 ORTHO05D000074 1.7e-18 98.2 382 27.5
Dinv43798 Davidia involucrata HOM05D000713 ORTHO05D000547 2.2e-18 97.8 382 27.5
Lj2C486T7 Lonicera japonica HOM05D000151 ORTHO05D000074 3.7e-18 97.1 416 24.8
FvH4_6g47001 Fragaria vesca HOM05D006368 ORTHO05D006739 8.3e-18 95.9 451 24.8
FvH4_6g49120 Fragaria vesca HOM05D006368 ORTHO05D006739 8.3e-18 95.9 395 25.8
FAN02G0212 Fragaria x ananassa HOM05D006368 ORTHO05D006739 8.3e-18 95.9 455 23.5
FvH4_6g49281 Fragaria vesca HOM05D006368 ORTHO05D006739 1.1e-17 95.5 416 24.3
TAR626G0415 Trochodendron aralioides HOM05D000151 ORTHO05D000074 1.4e-17 95.1 396 26.3
TAR525G0003 Trochodendron aralioides HOM05D000151 ORTHO05D000074 2.4e-17 94.4 396 25.8
FAN09G3687 Fragaria x ananassa HOM05D006368 ORTHO05D006739 9.2e-17 92.4 406 24.1
TAR636G1766 Trochodendron aralioides HOM05D000151 ORTHO05D000074 9.2e-17 92.4 408 25.2
TAR636G0219 Trochodendron aralioides HOM05D000151 ORTHO05D000074 1.6e-16 91.7 387 27.1
FAN14G2751 Fragaria x ananassa HOM05D006368 ORTHO05D006739 3.5e-16 90.5 415 25.3
TPR.G25164 Trifolium pratense HOM05D010147 ORTHO05D006739 5.9e-16 89.7 248 26.6
FAN02G0373 Fragaria x ananassa HOM05D006368 ORTHO05D006739 1.0e-15 89.0 238 29.0
FvH4_6g36920 Fragaria vesca HOM05D006368 ORTHO05D006739 1.3e-15 88.6 400 23.2
FvH4_6g47002 Fragaria vesca HOM05D006368 ORTHO05D006739 1.7e-15 88.2 238 29.0
MD16G1228400 Malus domestica HOM05D000151 ORTHO05D000074 1.7e-15 88.2 442 23.3
FAN14G0640 Fragaria x ananassa HOM05D006368 ORTHO05D006739 3.0e-15 87.4 233 29.2
FAN14G0813 Fragaria x ananassa HOM05D006368 ORTHO05D006739 3.0e-15 87.4 393 24.2
MD09G1027500 Malus domestica HOM05D006368 ORTHO05D006739 6.6e-15 86.3 248 26.2
Peaxi162Scf00074g00732 Petunia axillaris HOM05D000151 ORTHO05D000074 8.6e-15 85.9 417 25.4
MD03G1085600 Malus domestica HOM05D006368 ORTHO05D006739 1.1e-14 85.5 386 25.6
Lj2C484T9 Lonicera japonica HOM05D000151 ORTHO05D000074 1.5e-14 85.1 324 25.9
MBI18_g45941_MAGBIO Magnolia biondii HOM05D000151 ORTHO05D000074 1.9e-14 84.7 379 25.3
FAN16G0274 Fragaria x ananassa HOM05D006368 ORTHO05D006739 4.3e-14 83.6 246 26.4
FAN02G2469 Fragaria x ananassa HOM05D006368 ORTHO05D006739 5.6e-14 83.2 227 28.6
QL04p010169 Quercus lobata HOM05D000151 ORTHO05D000074 5.6e-14 83.2 418 25.1
FAN09G2575 Fragaria x ananassa HOM05D006368 ORTHO05D006739 1.2e-13 82.0 411 22.9
FAN05G3646 Fragaria x ananassa HOM05D006368 ORTHO05D006739 2.1e-13 81.3 281 26.7
Peaxi162Scf00119g01111 Petunia axillaris HOM05D000151 ORTHO05D000074 2.8e-13 80.9 433 24.9
FAN14G0584 Fragaria x ananassa HOM05D006368 ORTHO05D006739 3.6e-13 80.5 229 28.8
FAN14G2798 Fragaria x ananassa HOM05D006368 ORTHO05D006739 3.6e-13 80.5 229 28.8
TAR636G1620 Trochodendron aralioides HOM05D000151 ORTHO05D000074 4.7e-13 80.1 393 24.4
Medtr3g114970 Medicago truncatula HOM05D000151 ORTHO05D000074 6.2e-13 79.7 384 26.0
RcHm_v2.0_Chr7g0197821 Rosa chinensis HOM05D006368 ORTHO05D006739 6.2e-13 79.7 214 29.9
Prupe.8G152400 Prunus persica HOM05D007346 ORTHO05D009044 8.0e-13 79.3 190 28.4
FAN25G0093 Fragaria x ananassa HOM05D007346 ORTHO05D009044 1.0e-12 79.0 382 25.4
Ciclev10017666m.g Citrus clementina HOM05D000151 ORTHO05D000074 1.4e-12 78.6 412 23.1
FAN05G2214 Fragaria x ananassa HOM05D011252 ORTHO05D016562 4.0e-12 77.0 227 32.6
Prupe.3G291200 Prunus persica HOM05D006368 ORTHO05D006739 4.0e-12 77.0 434 22.8
FvH4_6g21291 Fragaria vesca HOM05D024214 ORTHO05D016562 5.2e-12 76.6 176 36.4
Lalb_Chr19g0133241 Lupinus albus HOM05D006368 ORTHO05D006739 5.2e-12 76.6 438 23.3
Manes.07G048850 Manihot esculenta HOM05D000151 ORTHO05D000074 5.2e-12 76.6 421 23.5
FAN05G4829 Fragaria x ananassa HOM05D006368 ORTHO05D006739 8.9e-12 75.9 226 29.6
Lj2P549T12 Lonicera japonica HOM05D000151 ORTHO05D000074 8.9e-12 75.9 344 26.2
Peaxi162Scf00119g00123 Petunia axillaris HOM05D000151 ORTHO05D000074 8.9e-12 75.9 441 24.9
FvH4_6g47170 Fragaria vesca HOM05D006368 ORTHO05D006739 1.2e-11 75.5 225 30.2
Peaxi162Scf00119g00124 Petunia axillaris HOM05D000151 ORTHO05D000074 1.2e-11 75.5 441 24.9
FAN02G3903 Fragaria x ananassa HOM05D006368 ORTHO05D006739 1.5e-11 75.1 197 31.0
Manes.07G048800 Manihot esculenta HOM05D000151 ORTHO05D000074 1.5e-11 75.1 412 23.1
TWI09G0382 Tripterygium wilfordii HOM05D000151 ORTHO05D000074 2.0e-11 74.7 394 22.8
TAR636G3441 Trochodendron aralioides HOM05D000151 ORTHO05D000074 5.8e-11 73.2 284 26.1
Aqoxy4G01250 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 7.5e-11 72.8 441 23.4
MBI18_g40419_MAGBIO Magnolia biondii HOM05D000151 ORTHO05D000074 7.5e-11 72.8 210 31.9
FAN09G0606 Fragaria x ananassa HOM05D006368 ORTHO05D006739 1.3e-10 72.0 196 28.1
Manes.07G051600 Manihot esculenta HOM05D000151 ORTHO05D000074 1.3e-10 72.0 418 23.9
Aqoxy5G01074 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 1.7e-10 71.6 388 22.9
Manes.07G048900 Manihot esculenta HOM05D000151 ORTHO05D000074 2.2e-10 71.2 294 25.5
Thecc.04G266500 Theobroma cacao HOM05D000151 ORTHO05D000074 2.9e-10 70.9 435 23.2
COL.COLO4_29718 Corchorus olitorius HOM05D001286 ORTHO05D000440 6.4e-10 69.7 187 29.4
FAN14G3548 Fragaria x ananassa HOM05D006368 ORTHO05D006739 6.4e-10 69.7 181 29.3
FAN21G1548 Fragaria x ananassa HOM05D007346 ORTHO05D009044 8.3e-10 69.3 364 23.4
Lj2P474T30 Lonicera japonica HOM05D000151 ORTHO05D000074 8.3e-10 69.3 308 25.6
Prupe.8G151600 Prunus persica HOM05D007346 ORTHO05D009044 8.3e-10 69.3 200 28.0
FvH4_6g39721 Fragaria vesca HOM05D006368 ORTHO05D006739 1.1e-09 68.9 299 25.4
FAN14G2460 Fragaria x ananassa HOM05D006368 ORTHO05D006739 1.4e-09 68.6 328 22.0
Cfa012527 Carpinus fangiana HOM05D007346 ORTHO05D009044 1.9e-09 68.2 191 28.8
Cc08_g14360 Coffea canephora HOM05D000151 ORTHO05D000074 1.9e-09 68.2 283 27.6
Hma1.2p1_0091F.1_g046550 Hydrangea macrophylla HOM05D000151 ORTHO05D000074 2.4e-09 67.8 406 24.1
FAN06G1165 Fragaria x ananassa HOM05D007346 ORTHO05D009044 3.2e-09 67.4 390 23.6
FvH4_6g49640 Fragaria vesca HOM05D006368 ORTHO05D006739 4.1e-09 67.0 248 22.6
FAN20G2910 Fragaria x ananassa HOM05D007346 ORTHO05D009044 4.1e-09 67.0 219 29.2
Lj2P493T31 Lonicera japonica HOM05D000151 ORTHO05D000074 7.0e-09 66.2 323 25.4
EL10Ac4g08311 Beta vulgaris HOM05D000151 ORTHO05D000074 9.2e-09 65.9 383 21.4
Medtr1g059840 Medicago truncatula HOM05D001286 ORTHO05D000440 9.2e-09 65.9 192 25.5
FAN09G3725 Fragaria x ananassa HOM05D006368 ORTHO05D006739 1.2e-08 65.5 202 26.7
FAN11G1982 Fragaria x ananassa HOM05D008995 ORTHO05D000074 1.2e-08 65.5 348 24.1
COL.COLO4_29554 Corchorus olitorius HOM05D008995 ORTHO05D000074 1.6e-08 65.1 362 24.0
FvH4_2g28870 Fragaria vesca HOM05D006368 ORTHO05D006739 1.6e-08 65.1 267 25.1
Ciclev10030189m.g Citrus clementina HOM05D007346 ORTHO05D009044 2.7e-08 64.3 247 27.9
Gohir.D01G195200 Gossypium hirsutum HOM05D001286 ORTHO05D000440 2.7e-08 64.3 177 27.7
Gorai.002G239400 Gossypium raimondii HOM05D001286 ORTHO05D000440 2.7e-08 64.3 177 27.7
Lj2P518T20 Lonicera japonica HOM05D000151 ORTHO05D000074 2.7e-08 64.3 243 26.7
RcHm_v2.0_Chr4g0393391 Rosa chinensis HOM05D007346 ORTHO05D009044 3.5e-08 63.9 215 26.5
Atru.chr8.1486 Acer truncatum HOM05D001286 ORTHO05D000440 6.0e-08 63.2 182 27.5
Haze_18850 Corylus avellana HOM05D000151 ORTHO05D000074 6.0e-08 63.2 255 25.5
Lj5g0005331 Lotus japonicus HOM05D001286 ORTHO05D000440 6.0e-08 63.2 227 25.1
MD09G1050100 Malus domestica HOM05D006368 ORTHO05D006739 6.0e-08 63.2 219 25.6
RcHm_v2.0_Chr4g0434481 Rosa chinensis HOM05D008995 ORTHO05D000074 6.0e-08 63.2 364 22.0
COL.COLO4_03636 Corchorus olitorius HOM05D000151 ORTHO05D000074 7.8e-08 62.8 421 22.6
TAR376G0686 Trochodendron aralioides HOM05D000151 ORTHO05D000074 7.8e-08 62.8 330 23.9
AUR62006191 Chenopodium quinoa HOM05D001286 ORTHO05D000440 1.0e-07 62.4 243 25.1
Ca_00899_v3 Cicer arietinum L. HOM05D001286 ORTHO05D000440 1.0e-07 62.4 183 26.2
Duzib106G1385 Durio zibethinus HOM05D001286 ORTHO05D000440 1.0e-07 62.4 226 26.1
Gohir.A01G205800 Gossypium hirsutum HOM05D001286 ORTHO05D000440 1.0e-07 62.4 177 27.1
Thecc.03G224900 Theobroma cacao HOM05D000151 ORTHO05D000074 1.0e-07 62.4 352 24.7
AUR62031398 Chenopodium quinoa HOM05D000151 ORTHO05D000074 1.3e-07 62.0 236 27.5
MBI18_g17004_MAGBIO Magnolia biondii HOM05D000151 ORTHO05D000074 1.3e-07 62.0 182 32.4
Lj2C479T1 Lonicera japonica HOM05D000151 ORTHO05D000074 1.7e-07 61.6 250 25.2
TPR.G9893 Trifolium pratense HOM05D001286 ORTHO05D000440 1.7e-07 61.6 193 25.4
Aqoxy7G03306 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 2.3e-07 61.2 397 24.4
FvH4_3g27200 Fragaria vesca HOM05D008995 ORTHO05D000074 2.3e-07 61.2 332 23.8
Cfa016618 Carpinus fangiana HOM05D001286 ORTHO05D000440 3.0e-07 60.8 242 24.4
FAN15G3238 Fragaria x ananassa HOM05D006368 ORTHO05D006739 3.0e-07 60.8 96 38.5
Lalb_Chr19g0124301 Lupinus albus HOM05D010147 ORTHO05D006739 3.9e-07 60.5 368 22.3
QL07p038675 Quercus lobata HOM05D001286 ORTHO05D000440 3.9e-07 60.5 182 28.0
Thecc.05G090300 Theobroma cacao HOM05D001286 ORTHO05D000440 3.9e-07 60.5 187 25.7
FAN16G1355 Fragaria x ananassa HOM05D008995 ORTHO05D000074 5.0e-07 60.1 219 27.9
Ca_07674_v3 Cicer arietinum L. HOM05D010147 ORTHO05D006739 6.6e-07 59.7 218 25.7
Duzib093G1514 Durio zibethinus HOM05D001286 ORTHO05D000440 6.6e-07 59.7 187 27.3
FAN20G1708 Fragaria x ananassa HOM05D006368 ORTHO05D006739 6.6e-07 59.7 96 38.5
FAN24G2342 Fragaria x ananassa HOM05D006368 ORTHO05D006739 6.6e-07 59.7 96 38.5
Prupe.7G109000 Prunus persica HOM05D001286 ORTHO05D000440 8.6e-07 59.3 183 26.2
Hund03994 Selenicereus undatus HOM05D001286 ORTHO05D000440 8.6e-07 59.3 227 26.4
TAR636G2580 Trochodendron aralioides HOM05D000151 ORTHO05D000074 8.6e-07 59.3 227 27.3
Psat3g032400 Pisum sativum HOM05D001286 ORTHO05D000440 1.5e-06 58.5 192 27.6
EL10Ac7g16907 Beta vulgaris HOM05D001286 ORTHO05D000440 1.9e-06 58.2 238 24.8
AUR62037031 Chenopodium quinoa HOM05D001286 ORTHO05D000440 1.9e-06 58.2 243 24.7
FAN24G0202 Fragaria x ananassa HOM05D006368 ORTHO05D006739 1.9e-06 58.2 95 36.8
Ah.15g090840 Amaranthus hybridus HOM05D001286 ORTHO05D000440 2.5e-06 57.8 228 25.4
FAN02G0769 Fragaria x ananassa HOM05D006368 ORTHO05D006739 2.5e-06 57.8 216 28.7
Ah.08g210520 Amaranthus hybridus HOM05D001286 ORTHO05D000440 3.3e-06 57.4 246 24.4
FAN12G2895 Fragaria x ananassa HOM05D006368 ORTHO05D006739 3.3e-06 57.4 226 25.2
Phvul.001G190800 Phaseolus vulgaris HOM05D001286 ORTHO05D000440 3.3e-06 57.4 225 24.4
Psat6g080440 Pisum sativum HOM05D001286 ORTHO05D000440 3.3e-06 57.4 193 24.9
VMungo1383G3108 Vigna mungo HOM05D001286 ORTHO05D000440 4.3e-06 57.0 225 24.4
CiPaw.10G010500 Carya illinoinensis HOM05D001286 ORTHO05D000440 5.6e-06 56.6 125 32.8
Manes.08G026100 Manihot esculenta HOM05D001286 ORTHO05D000440 5.6e-06 56.6 179 27.9
TAR376G0134 Trochodendron aralioides HOM05D001286 ORTHO05D000440 5.6e-06 56.6 197 26.4
Glyma.10G073700 Glycine max HOM05D001286 ORTHO05D000440 7.3e-06 56.2 183 25.1


User provided reference genes

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