Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G2664 Fragaria x ananassa HOM05D006487 ORTHO05D007982 7.2e-201 703.7 365 100.0
FAN08G3399 Fragaria x ananassa HOM05D006487 ORTHO05D007982 1.4e-175 619.8 418 82.1
FvH4_5g18410 Fragaria vesca HOM05D006487 ORTHO05D007982 1.0e-159 567.0 450 73.3
FAN13G0937 Fragaria x ananassa HOM05D006487 ORTHO05D007982 1.8e-159 566.2 426 75.4
FAN18G0592 Fragaria x ananassa HOM05D006487 ORTHO05D007982 8.9e-135 484.2 313 83.1
RcHm_v2.0_Chr7g0177071 Rosa chinensis HOM05D006487 ORTHO05D007982 2.2e-125 453.0 467 60.4
Prupe.5G243800 Prunus persica HOM05D006487 ORTHO05D007982 7.6e-102 374.8 456 52.0
Haze_18332 Corylus avellana HOM05D006487 ORTHO05D007982 1.1e-76 291.2 427 45.4
CANSAT64G1132 Cannabis sativa HOM05D006487 ORTHO05D007982 5.1e-74 282.3 444 44.1
Phvul.004G139000 Phaseolus vulgaris HOM05D006487 ORTHO05D007982 4.1e-71 272.7 439 45.3
TWI81G0553 Tripterygium wilfordii HOM05D006487 ORTHO05D007982 2.2e-69 266.9 450 44.9
Thecc.05G197400 Theobroma cacao HOM05D006487 ORTHO05D007982 3.2e-68 263.1 441 45.4
MD14G1245900 Malus domestica HOM05D006487 ORTHO05D007982 9.4e-68 261.5 445 41.3
COL.COLO4_24904 Corchorus olitorius HOM05D006487 ORTHO05D007982 4.7e-67 259.2 393 45.5
Glyma.09G164600 Glycine max HOM05D006487 ORTHO05D007982 1.4e-66 257.7 439 44.4
Lalb_Chr22g0353991 Lupinus albus HOM05D006487 ORTHO05D007982 5.2e-66 255.8 438 43.4
PGR083G2465 Punica granatum HOM05D006487 ORTHO05D007982 6.7e-66 255.4 406 43.6
Gohir.A08G225300 Gossypium hirsutum HOM05D006487 ORTHO05D007982 1.1e-65 254.6 438 42.2
Psat1g121120 Pisum sativum HOM05D006487 ORTHO05D007982 4.4e-65 252.7 427 45.2
FAN09G4505 Fragaria x ananassa HOM05D006487 ORTHO05D007982 5.7e-65 252.3 123 99.2
Gorai.004G262200 Gossypium raimondii HOM05D006487 ORTHO05D007982 6.3e-64 248.8 451 41.2
PSO063G4419 Papaver somniferum HOM05D006487 ORTHO05D007982 3.1e-63 246.5 419 42.2
Sed0005317 Sechium edule HOM05D006487 ORTHO05D007982 4.1e-63 246.1 426 43.2
Nitab4.5_0000782g0060 Nicotiana tabacum HOM05D006487 ORTHO05D007982 1.2e-62 244.6 407 43.0
arahy.Tifrunner.gnm1.ann1.49K0I5 Arachis hypogaea HOM05D006487 ORTHO05D007982 2.0e-62 243.8 449 42.3
Lj2g0009690 Lotus japonicus HOM05D006487 ORTHO05D007982 2.7e-62 243.4 447 42.1
QL10p034099 Quercus lobata HOM05D006487 ORTHO05D007982 7.7e-62 241.9 407 44.5
Potri.004G069400 Populus trichocarpa HOM05D006487 ORTHO05D007982 1.0e-61 241.5 438 42.5
Manes.02G218400 Manihot esculenta HOM05D006487 ORTHO05D007982 1.7e-61 240.7 413 42.4
FAN09G0815 Fragaria x ananassa HOM05D006487 ORTHO05D007982 2.9e-61 240.0 121 97.5
Sopen03g029330 Solanum pennellii HOM05D006487 ORTHO05D007982 2.9e-61 240.0 405 41.5
arahy.Tifrunner.gnm1.ann1.FG107U Arachis hypogaea HOM05D006487 ORTHO05D007982 5.0e-61 239.2 412 43.7
PGSC0003DMG400010175 Solanum tuberosum HOM05D006487 ORTHO05D007982 5.0e-61 239.2 405 41.5
Actinidia34682 Actinidia chinensis HOM05D006487 ORTHO05D007982 8.5e-61 238.4 404 40.8
Hma1.2p1_0989F.1_g244820 Hydrangea macrophylla HOM05D006487 ORTHO05D007982 1.5e-60 237.7 471 41.6
Nn4g25081 Nelumbo nucifera HOM05D006487 ORTHO05D007982 1.5e-60 237.7 437 41.2
Ciclev10020398m.g Citrus clementina HOM05D006487 ORTHO05D007982 1.9e-60 237.3 399 46.6
Dinv03426 Davidia involucrata HOM05D006487 ORTHO05D007982 2.5e-60 236.9 389 43.7
Prupe.4G244900 Prunus persica HOM05D006487 ORTHO05D007982 4.2e-60 236.1 233 56.2
HanXRQChr15g0492111 Helianthus annuus HOM05D006487 ORTHO05D007982 7.2e-60 235.3 410 42.9
PSO782G2052 Papaver somniferum HOM05D006487 ORTHO05D007982 1.2e-59 234.6 425 39.5
CsaV3_1G007510 Cucumis sativus L. HOM05D006487 ORTHO05D007982 2.1e-59 233.8 440 41.1
Glyma.16G213000 Glycine max HOM05D006487 ORTHO05D007982 2.7e-59 233.4 353 45.6
Medtr6g077860 Medicago truncatula HOM05D006487 ORTHO05D007982 2.7e-59 233.4 427 42.4
VMungo0464G1082 Vigna mungo HOM05D006487 ORTHO05D007982 6.1e-59 232.3 385 42.9
TAR629G0717 Trochodendron aralioides HOM05D006487 ORTHO05D007982 1.0e-58 231.5 409 42.5
Gohir.D08G245700 Gossypium hirsutum HOM05D006487 ORTHO05D007982 1.4e-58 231.1 438 40.4
MELO3C002168.2 Cucumis melo HOM05D006487 ORTHO05D007982 6.8e-58 228.8 443 39.1
Ca_11836_v3 Cicer arietinum L. HOM05D006487 ORTHO05D007982 8.8e-58 228.4 429 41.7
MBI06_g27513_MAGBIO Magnolia biondii HOM05D006487 ORTHO05D007982 8.8e-58 228.4 409 39.6
CAN.G929.21 Capsicum annuum HOM05D006487 ORTHO05D007982 1.2e-57 228.0 405 40.2
Nitab4.5_0003040g0090 Nicotiana tabacum HOM05D006487 ORTHO05D007982 1.5e-57 227.6 403 40.9
Aqoxy3G04297 Aquilegia oxysepala HOM05D006487 ORTHO05D007982 9.8e-57 224.9 400 40.0
Solyc03g098620.3 Solanum lycopersicum HOM05D006487 ORTHO05D007982 1.3e-56 224.6 398 40.2
BcaC07g37138 Brassica carinata HOM05D006487 ORTHO05D007982 2.8e-56 223.4 363 40.8
A08p04750 Brassica napus HOM05D006487 ORTHO05D007982 3.7e-56 223.0 368 41.0
BraA08t32504Z Brassica rapa HOM05D006487 ORTHO05D007982 3.7e-56 223.0 368 41.0
C08p05120 Brassica napus HOM05D006487 ORTHO05D007982 6.3e-56 222.2 365 40.5
Thhalv10011620m.g Eutrema salsugineum HOM05D006487 ORTHO05D007982 1.1e-55 221.5 337 42.7
Lsat_1_v5_gn_0_10541 Lactuca sativa HOM05D006487 ORTHO05D007982 1.4e-55 221.1 409 41.1
BolC8t47322H Brassica oleracea HOM05D006487 ORTHO05D007982 2.4e-55 220.3 362 40.6
AL1G54980 Arabidopsis lyrata HOM05D006487 ORTHO05D007982 4.1e-55 219.5 333 42.3
Peaxi162Scf00171g00242 Petunia axillaris HOM05D006487 ORTHO05D007982 1.6e-54 217.6 343 43.7
Cpa.g.sc168.16 Carica papaya HOM05D006487 ORTHO05D007982 2.0e-54 217.2 232 54.3
Rhsim08G0124800 Rhododendron simsii HOM05D006487 ORTHO05D007982 2.7e-54 216.9 245 51.0
THA.LOC104820327 Tarenaya hassleriana HOM05D006487 ORTHO05D007982 1.0e-53 214.9 311 44.7
ClCG01G014820 Citrullus lanatus HOM05D006487 ORTHO05D007982 1.7e-53 214.2 262 50.4
GSVIVG01027119001 Vitis vinifera HOM05D006487 ORTHO05D007982 1.7e-53 214.2 353 43.9
Carub.0001s3750 Capsella rubella HOM05D006487 ORTHO05D007982 2.9e-53 213.4 335 42.1
Sp1g35330 Schrenkiella parvula HOM05D006487 ORTHO05D007982 2.9e-53 213.4 354 40.7
Atru.chr9.84 Acer truncatum HOM05D006487 ORTHO05D007982 1.5e-52 211.1 236 53.0
BcaB04g17434 Brassica carinata HOM05D006487 ORTHO05D007982 2.5e-52 210.3 361 41.0
CARHR037990 Cardamine hirsuta HOM05D006487 ORTHO05D007982 5.5e-52 209.1 340 41.8
Oeu023551.1 Olea europaea HOM05D006487 ORTHO05D007982 5.5e-52 209.1 416 38.5
SGA_v2.0_scaffold90G27746 Striga asiatica HOM05D006487 ORTHO05D007982 9.4e-52 208.4 442 38.0
Sc07g0007560 Simmondsia chinensis HOM05D006487 ORTHO05D007982 1.2e-51 208.0 411 39.9
Cc04_g08450 Coffea canephora HOM05D006487 ORTHO05D007982 1.6e-51 207.6 420 41.0
Eucgr.H00648 Eucalyptus grandis HOM05D006487 ORTHO05D007982 1.6e-51 207.6 220 52.7
Hund22367 Selenicereus undatus HOM05D006487 ORTHO05D007982 3.6e-51 206.5 252 46.4
AUR62033020 Chenopodium quinoa HOM05D006487 ORTHO05D007982 1.2e-49 201.4 374 39.3
TAR629G1006 Trochodendron aralioides HOM05D006487 ORTHO05D007982 3.4e-49 199.9 157 60.5
EL10Ac8g19478 Beta vulgaris HOM05D006487 ORTHO05D007982 4.4e-49 199.5 144 67.4
AT1G48380 Arabidopsis thaliana HOM05D006487 ORTHO05D007982 9.8e-49 198.4 374 39.6
Migut.O00267 Erythranthe guttata HOM05D006487 ORTHO05D007982 9.8e-49 198.4 419 36.3
MSTRG.23212 Avicennia marina HOM05D006487 ORTHO05D007982 1.3e-48 198.0 421 36.1
AUR62040775 Chenopodium quinoa HOM05D006487 ORTHO05D007982 1.7e-48 197.6 248 46.8
Lj9A412T44 Lonicera japonica HOM05D006487 ORTHO05D007982 2.2e-48 197.2 335 40.6
HPP92_014774 Vanilla planifolia HOM05D006487 ORTHO05D007982 4.1e-47 193.0 415 36.6
DCAR_011682 Daucus carota HOM05D006487 ORTHO05D007982 2.0e-46 190.7 393 36.9
Sabra04G0046600 Salix brachista HOM05D006487 ORTHO05D007982 1.0e-45 188.3 447 36.2
Zm00001eb271770 Zea mays HOM05D006487 ORTHO05D007982 5.0e-45 186.0 385 38.7
CDE04G1004 Ceratophyllum demersum HOM05D006487 ORTHO05D007982 6.6e-45 185.7 318 42.1
vmacro17744 Vaccinium macrocarpon HOM05D006487 ORTHO05D007982 8.6e-45 185.3 319 39.2
SalBow5G2999 Salvia bowleyana HOM05D006487 ORTHO05D007982 1.6e-43 181.0 266 41.4
ATR0618G270 Amborella trichopoda HOM05D006487 ORTHO05D007982 1.4e-42 177.9 360 35.8
Os07g0172200 Oryza sativa ssp. japonica HOM05D006487 ORTHO05D007982 4.9e-40 169.5 329 38.3
TPR.G19888 Trifolium pratense HOM05D006487 ORTHO05D007982 3.5e-38 163.3 352 37.2
SEGI_16734 Sequoiadendron giganteum HOM05D006487 ORTHO05D007982 1.7e-37 161.0 343 32.9
SMO117G0078 Selaginella moellendorffii HOM05D006487 ORTHO05D007982 1.8e-34 151.0 183 45.4
CiPaw.16G073400 Carya illinoinensis HOM05D006487 ORTHO05D007982 3.4e-33 146.7 334 39.8
Cfa017861 Carpinus fangiana HOM05D006487 ORTHO05D007982 4.9e-32 142.9 311 38.3
Pp3c25_9140 Physcomitrium patens HOM05D006487 ORTHO05D007982 2.4e-31 140.6 362 33.1
Pp3c5_25480 Physcomitrium patens HOM05D006487 ORTHO05D007982 9.2e-31 138.7 365 31.8
AagrBONN_evm.TU.Sc2ySwM_228.567 Anthoceros agrestis HOM05D006487 ORTHO05D007982 6.0e-30 136.0 117 48.7
Mapoly0080s0074 Marchantia polymorpha HOM05D006487 ORTHO05D007982 7.8e-30 135.6 384 31.0
Os06g0730200 Oryza sativa ssp. japonica HOM05D006487 ORTHO05D007982 2.5e-28 130.6 115 58.3
Aa31LG10G5380 Aethionema arabicum HOM05D006487 ORTHO05D007982 1.3e-21 108.2 220 35.9
Ah.14g085790 Amaranthus hybridus HOM05D006487 ORTHO05D007982 1.7e-21 107.8 84 64.3
Prupe.2G315400 Prunus persica HOM05D006487 ORTHO05D007982 2.3e-21 107.5 164 41.5
TPR.G27400 Trifolium pratense HOM05D006487 ORTHO05D007982 3.0e-21 107.1 98 60.2
Hma1.2p1_0989F.1_g244830 Hydrangea macrophylla HOM05D006487 ORTHO05D007982 8.1e-19 99.0 168 41.7
Cre13.g576500 Chlamydomonas reinhardtii HOM05D006487 ORTHO05D007982 3.2e-15 87.0 173 35.8
CBR_g34174 Chara braunii HOM05D006487 ORTHO05D007982 1.0e-13 82.0 104 40.4
PRCOL_00006754 Prasinoderma coloniale HOM05D006487 ORTHO05D007982 2.1e-11 74.3 124 35.5
ECA232G2176 Erigeron canadensis HOM05D006487 ORTHO05D007982 2.9e-08 63.9 242 32.2
MCO12G143 Micromonas commoda HOM05D006487 ORTHO05D007982 3.8e-08 63.5 130 32.3


User provided reference genes

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