Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G2646 Fragaria x ananassa HOM05D004231 ORTHO05D004814 2.2e-41 171.8 83 100.0
FAN05G3570 Fragaria x ananassa HOM05D004231 ORTHO05D004814 4.4e-29 131.0 71 90.1
FAN07G1153 Fragaria x ananassa HOM05D004231 ORTHO05D004814 2.8e-28 128.3 71 87.3
FAN15G0284 Fragaria x ananassa HOM05D004231 ORTHO05D004814 2.4e-27 125.2 71 85.9
FAN25G3338 Fragaria x ananassa HOM05D004231 ORTHO05D004814 2.8e-20 101.7 69 75.4
FAN05G5401 Fragaria x ananassa HOM05D004231 ORTHO05D004814 4.8e-20 100.9 63 81.0
FvH4_3g29830 Fragaria vesca HOM05D004126 ORTHO05D004818 4.2e-16 87.8 68 69.1
FAN23G0549 Fragaria x ananassa HOM05D004231 ORTHO05D004814 3.4e-13 78.2 45 82.2
FAN23G1162 Fragaria x ananassa HOM05D004231 ORTHO05D004814 3.4e-13 78.2 45 82.2
FAN15G0610 Fragaria x ananassa HOM05D004231 ORTHO05D004814 9.8e-13 76.6 52 76.9
FAN27G2171 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.3e-12 76.3 52 75.0
FvH4_2g16830 Fragaria vesca HOM05D004231 ORTHO05D004814 2.8e-12 75.1 52 75.0
FAN24G0296 Fragaria x ananassa HOM05D004231 ORTHO05D004814 2.8e-12 75.1 52 75.0
RcHm_v2.0_Chr6g0280961 Rosa chinensis HOM05D004231 ORTHO05D004814 1.1e-11 73.2 52 71.2
MD10G1142000 Malus domestica HOM05D004231 ORTHO05D004814 7.7e-10 67.0 62 56.5
Prupe.8G180500 Prunus persica HOM05D004231 ORTHO05D004814 1.3e-09 66.2 52 61.5
ClCG02G003360 Citrullus lanatus HOM05D004231 ORTHO05D004814 6.5e-09 63.9 52 57.7
Potri.009G168400 Populus trichocarpa HOM05D004231 ORTHO05D004814 6.5e-09 63.9 48 66.7
MELO3C015708.2 Cucumis melo HOM05D004231 ORTHO05D004814 8.5e-09 63.5 52 57.7
CsaV3_7G001970 Cucumis sativus L. HOM05D004231 ORTHO05D004814 8.5e-09 63.5 52 57.7
Nn7g36283 Nelumbo nucifera HOM05D004231 ORTHO05D004814 1.1e-08 63.2 48 64.6
Sed0021373 Sechium edule HOM05D004231 ORTHO05D004814 1.1e-08 63.2 54 61.1
Sed0027682 Sechium edule HOM05D004231 ORTHO05D004814 1.5e-08 62.8 52 59.6
Potri.004G207000 Populus trichocarpa HOM05D004231 ORTHO05D004814 1.9e-08 62.4 47 66.0
BcaC01g02941 Brassica carinata HOM05D004231 ORTHO05D004814 2.5e-08 62.0 76 47.4
A06p34120 Brassica napus HOM05D004231 ORTHO05D004814 2.5e-08 62.0 80 48.8
BraA06t26345Z Brassica rapa HOM05D004231 ORTHO05D004814 2.5e-08 62.0 80 48.8
Manes.01G017200 Manihot esculenta HOM05D004231 ORTHO05D004814 2.5e-08 62.0 51 58.8
Cfa005374 Carpinus fangiana HOM05D004231 ORTHO05D004814 3.2e-08 61.6 46 67.4
Sabra04G0139300 Salix brachista HOM05D004231 ORTHO05D004814 3.2e-08 61.6 47 63.8
Actinidia17992 Actinidia chinensis HOM05D004231 ORTHO05D004814 4.2e-08 61.2 72 48.6
Dinv14175 Davidia involucrata HOM05D004231 ORTHO05D004814 4.2e-08 61.2 52 59.6
Nn2g15251 Nelumbo nucifera HOM05D004231 ORTHO05D004814 4.2e-08 61.2 48 64.6
Oeu005953.1 Olea europaea HOM05D004231 ORTHO05D004814 4.2e-08 61.2 46 63.0
unitig_0.g2083 Utricularia gibba HOM05D004231 ORTHO05D004814 4.2e-08 61.2 52 55.8
Aa31LG2G14870 Aethionema arabicum HOM05D004231 ORTHO05D004814 5.5e-08 60.8 49 61.2
A07p03760 Brassica napus HOM05D004231 ORTHO05D004814 5.5e-08 60.8 49 59.2
C07p06030 Brassica napus HOM05D004231 ORTHO05D004814 5.5e-08 60.8 49 59.2
BraA07t28164Z Brassica rapa HOM05D004231 ORTHO05D004814 5.5e-08 60.8 49 59.2
CANSAT25G0301 Cannabis sativa HOM05D004231 ORTHO05D004814 5.5e-08 60.8 52 53.8
BcaB03g16477 Brassica carinata HOM05D004231 ORTHO05D004814 7.2e-08 60.5 49 59.2
BcaB03g16478 Brassica carinata HOM05D004231 ORTHO05D004814 7.2e-08 60.5 49 59.2
BcaC04g22982 Brassica carinata HOM05D004231 ORTHO05D004814 7.2e-08 60.5 49 61.2
C09p13290 Brassica napus HOM05D004231 ORTHO05D004814 7.2e-08 60.5 49 61.2
BolC7t41016H Brassica oleracea HOM05D004231 ORTHO05D004814 7.2e-08 60.5 49 59.2
BolC9t54222H Brassica oleracea HOM05D004231 ORTHO05D004814 7.2e-08 60.5 49 61.2
CiPaw.06G115200 Carya illinoinensis HOM05D004231 ORTHO05D004814 9.4e-08 60.1 71 50.7
Thhalv10022738m.g Eutrema salsugineum HOM05D004231 ORTHO05D004814 9.4e-08 60.1 49 59.2
Lsat_1_v5_gn_4_71321 Lactuca sativa HOM05D004231 ORTHO05D004814 9.4e-08 60.1 46 60.9
QL06p003747 Quercus lobata HOM05D003236 ORTHO05D003620 9.4e-08 60.1 42 64.3
BcaB03g16474 Brassica carinata HOM05D004231 ORTHO05D004814 1.2e-07 59.7 49 59.2
BcaB07g31737 Brassica carinata HOM05D004231 ORTHO05D004814 1.2e-07 59.7 49 59.2
A09p11260 Brassica napus HOM05D004231 ORTHO05D004814 1.2e-07 59.7 49 59.2
C03p58080 Brassica napus HOM05D004231 ORTHO05D004814 1.2e-07 59.7 49 59.2
BolC3t18081H Brassica oleracea HOM05D004231 ORTHO05D004814 1.2e-07 59.7 49 59.2
BraA09t36767Z Brassica rapa HOM05D004231 ORTHO05D004814 1.2e-07 59.7 49 59.2
CDE05G1267 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 1.2e-07 59.7 46 56.5
CDE05G2018 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 1.2e-07 59.7 46 56.5
SGA_v2.0_scaffold172G39001 Striga asiatica HOM05D004231 ORTHO05D004814 1.2e-07 59.7 45 62.2
Duzib052G0175 Durio zibethinus HOM05D004231 ORTHO05D004814 1.6e-07 59.3 41 70.7
Lalb_Chr12g0208621 Lupinus albus HOM05D004231 ORTHO05D004814 1.6e-07 59.3 46 58.7
Peaxi162Scf00362g00110 Petunia axillaris HOM05D004231 ORTHO05D004814 1.6e-07 59.3 40 72.5
Sp3g30610 Schrenkiella parvula HOM05D004231 ORTHO05D004814 1.6e-07 59.3 49 59.2
Atru.chr5.3560 Acer truncatum HOM05D004231 ORTHO05D004814 2.1e-07 58.9 48 56.2
Cpa.g.sc60.14 Carica papaya HOM05D004231 ORTHO05D004814 2.1e-07 58.9 48 58.3
ECA233G1094 Erigeron canadensis HOM05D004231 ORTHO05D004814 2.1e-07 58.9 45 60.0
Sc08g0002160 Simmondsia chinensis HOM05D004231 ORTHO05D004814 2.1e-07 58.9 41 68.3
Solyc04g008760.3 Solanum lycopersicum HOM05D004231 ORTHO05D004814 2.1e-07 58.9 41 68.3
Sopen04g003940 Solanum pennellii HOM05D004231 ORTHO05D004814 2.1e-07 58.9 41 68.3
PGSC0003DMG400025309 Solanum tuberosum HOM05D004231 ORTHO05D004814 2.1e-07 58.9 41 68.3
CiPaw.05G093400 Carya illinoinensis HOM05D004231 ORTHO05D004814 2.7e-07 58.5 41 68.3
Ciclev10028700m.g Citrus clementina HOM05D004231 ORTHO05D004814 2.7e-07 58.5 48 60.4
Hma1.2p1_0652F.1_g195880 Hydrangea macrophylla HOM05D004231 ORTHO05D004814 2.7e-07 58.5 57 50.9
arahy.Tifrunner.gnm1.ann1.3XUX0K Arachis hypogaea HOM05D004231 ORTHO05D004814 3.6e-07 58.2 54 57.4
arahy.Tifrunner.gnm1.ann1.9M6UE0 Arachis hypogaea HOM05D004231 ORTHO05D004814 3.6e-07 58.2 54 57.4
BcaB08g34717 Brassica carinata HOM05D004231 ORTHO05D004814 3.6e-07 58.2 50 56.0
CSS0007201 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 3.6e-07 58.2 41 65.9
CAN.G5871.1 Capsicum annuum HOM05D004231 ORTHO05D004814 3.6e-07 58.2 41 61.0
HanXRQChr16g0515121 Helianthus annuus HOM05D004231 ORTHO05D004814 3.6e-07 58.2 41 65.9
Thecc.02G146400 Theobroma cacao HOM05D004231 ORTHO05D004814 3.6e-07 58.2 48 58.3
Ah.01g009950 Amaranthus hybridus HOM05D004231 ORTHO05D004814 4.7e-07 57.8 46 60.9
Aqoxy1G01703 Aquilegia oxysepala HOM05D004231 ORTHO05D004814 4.7e-07 57.8 73 45.2
AL3G50130 Arabidopsis lyrata HOM05D004231 ORTHO05D004814 4.7e-07 57.8 49 57.1
AT2G17265 Arabidopsis thaliana HOM05D004231 ORTHO05D004814 4.7e-07 57.8 49 57.1
EL10Ac9g21537 Beta vulgaris HOM05D004231 ORTHO05D004814 4.7e-07 57.8 46 63.0
CSS0030147 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 4.7e-07 57.8 48 60.4
Carub.0003s3121 Capsella rubella HOM05D004231 ORTHO05D004814 4.7e-07 57.8 49 57.1
CARHR293610 Cardamine hirsuta HOM05D004231 ORTHO05D004814 4.7e-07 57.8 49 57.1
Nitab4.5_0000129g0030 Nicotiana tabacum HOM05D004231 ORTHO05D004814 4.7e-07 57.8 41 63.4
Nitab4.5_0008730g0040 Nicotiana tabacum HOM05D004231 ORTHO05D004814 4.7e-07 57.8 41 63.4
CARHR243620 Cardamine hirsuta HOM05D004231 ORTHO05D004814 6.1e-07 57.4 47 59.6
ECA236G1252 Erigeron canadensis HOM05D000103 ORTHO05D000049 6.1e-07 57.4 54 51.9
Lsat_1_v5_gn_8_121420 Lactuca sativa HOM05D004231 ORTHO05D004814 6.1e-07 57.4 45 55.6
Carub.0007s0500 Capsella rubella HOM05D004231 ORTHO05D004814 8.0e-07 57.0 41 68.3
Migut.N00847 Erythranthe guttata HOM05D004231 ORTHO05D004814 8.0e-07 57.0 44 59.1
Lalb_Chr07g0189301 Lupinus albus HOM05D004231 ORTHO05D004814 8.0e-07 57.0 82 41.5
QL03p013131 Quercus lobata HOM05D004231 ORTHO05D004814 8.0e-07 57.0 42 61.9
QL05p043527 Quercus lobata HOM05D004231 ORTHO05D004814 8.0e-07 57.0 41 68.3
SGA_v2.0_scaffold36G14389 Striga asiatica HOM05D004231 ORTHO05D004814 8.0e-07 57.0 45 57.8
DCAR_006270 Daucus carota HOM05D004231 ORTHO05D004814 1.0e-06 56.6 41 61.0
Medtr5g099180 Medicago truncatula HOM05D004231 ORTHO05D004814 1.0e-06 56.6 46 60.9
PGSC0003DMG400014663 Solanum tuberosum HOM05D000109 ORTHO05D004814 1.0e-06 56.6 56 51.8
arahy.Tifrunner.gnm1.ann1.H05BEB Arachis hypogaea HOM05D004231 ORTHO05D004814 1.4e-06 56.2 59 54.2
Cc11_g00240 Coffea canephora HOM05D004231 ORTHO05D004814 1.4e-06 56.2 41 63.4
TPR.G18636 Trifolium pratense HOM05D004231 ORTHO05D004814 1.4e-06 56.2 43 62.8
Sopen01g054320 Solanum pennellii HOM05D004231 ORTHO05D004814 1.8e-06 55.8 40 65.0
LjContig00081g0001175 Lotus japonicus HOM05D004231 ORTHO05D004814 2.3e-06 55.5 41 65.9
Ca_10777_v3 Cicer arietinum L. HOM05D004231 ORTHO05D004814 3.0e-06 55.1 41 63.4
Peaxi162Scf00329g00312 Petunia axillaris HOM05D004231 ORTHO05D004814 3.0e-06 55.1 74 43.2
PSO541G6356 Papaver somniferum HOM05D004231 ORTHO05D004814 4.0e-06 54.7 46 50.0
PSO675G1855 Papaver somniferum HOM05D004231 ORTHO05D004814 4.0e-06 54.7 46 50.0
ATR0810G109 Amborella trichopoda HOM05D004231 ORTHO05D004814 5.2e-06 54.3 43 60.5
PSO063G5124 Papaver somniferum HOM05D004231 ORTHO05D004814 5.2e-06 54.3 46 50.0
PSO782G1111 Papaver somniferum HOM05D004231 ORTHO05D004814 5.2e-06 54.3 46 50.0
RhsimUnG0022900 Rhododendron simsii HOM05D004231 ORTHO05D004814 5.2e-06 54.3 52 55.8
SalBow7G0905 Salvia bowleyana HOM05D004231 ORTHO05D004814 5.2e-06 54.3 40 62.5
TWI75G1214 Tripterygium wilfordii HOM05D004231 ORTHO05D004814 5.2e-06 54.3 48 52.1
ATR0177G062 Amborella trichopoda HOM05D004231 ORTHO05D004814 6.8e-06 53.9 44 56.8
MSTRG.25000 Avicennia marina HOM05D004231 ORTHO05D004814 6.8e-06 53.9 40 65.0
Nitab4.5_0000783g0100 Nicotiana tabacum HOM05D004231 ORTHO05D004814 6.8e-06 53.9 40 62.5
Glyma.14G001000 Glycine max HOM05D004231 ORTHO05D004814 8.8e-06 53.5 41 65.9


User provided reference genes

Program Settings