Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G2633 Fragaria x ananassa HOM05D000260 ORTHO05D004405 6.0e-120 434.1 207 100.0
FvH4_5g11790 Fragaria vesca HOM05D000260 ORTHO05D004405 3.9e-79 298.5 277 61.4
FAN18G2567 Fragaria x ananassa HOM05D000260 ORTHO05D004405 3.6e-72 275.4 263 60.1
FAN18G0416 Fragaria x ananassa HOM05D000260 ORTHO05D004405 1.4e-71 273.5 272 59.2
FAN08G3010 Fragaria x ananassa HOM05D000260 ORTHO05D004405 1.7e-66 256.5 269 56.5
RcHm_v2.0_Chr7g0186021 Rosa chinensis HOM05D000260 ORTHO05D004405 2.3e-63 246.1 261 54.0
RcHm_v2.0_Chr7g0185911 Rosa chinensis HOM05D000072 ORTHO05D000026 1.5e-62 243.4 267 51.7
FAN08G3525 Fragaria x ananassa HOM05D000072 ORTHO05D000026 8.2e-61 237.7 267 53.9
FAN18G4313 Fragaria x ananassa HOM05D000072 ORTHO05D000410 4.1e-60 235.3 233 56.2
FAN18G0413 Fragaria x ananassa HOM05D000260 ORTHO05D004405 6.8e-55 218.0 122 85.2
FAN13G0627 Fragaria x ananassa HOM05D000072 ORTHO05D000026 1.7e-50 203.4 127 78.7
RcHm_v2.0_Chr7g0210001 Rosa chinensis HOM05D000260 ORTHO05D004405 1.2e-46 190.7 262 44.7
RcHm_v2.0_Chr7g0185891 Rosa chinensis HOM05D000260 ORTHO05D004405 3.7e-45 185.7 120 73.3
RcHm_v2.0_Chr7g0185971 Rosa chinensis HOM05D000260 ORTHO05D000318 5.4e-44 181.8 262 43.5
RcHm_v2.0_Chr7g0185941 Rosa chinensis HOM05D000072 ORTHO05D004405 4.5e-43 178.7 261 43.3
MD06G1219200 Malus domestica HOM05D000260 ORTHO05D004405 1.9e-36 156.8 257 40.1
PGR083G0967 Punica granatum HOM05D000260 ORTHO05D000318 1.4e-28 130.6 105 58.1
COL.COLO4_07247 Corchorus olitorius HOM05D000260 ORTHO05D004405 6.0e-27 125.2 241 35.7
Cpa.g.sc3.470 Carica papaya HOM05D000260 ORTHO05D004405 7.8e-27 124.8 254 35.4
Manes.05G132400 Manihot esculenta HOM05D000260 ORTHO05D004405 7.8e-27 124.8 239 31.4
Lj4g0027056 Lotus japonicus HOM05D000072 ORTHO05D000026 1.5e-25 120.6 243 34.6
Lalb_Chr09g0331051 Lupinus albus HOM05D000072 ORTHO05D000026 1.9e-25 120.2 247 32.4
QL10p026060 Quercus lobata HOM05D000260 ORTHO05D004405 1.9e-25 120.2 103 52.4
Thecc.03G038900 Theobroma cacao HOM05D000260 ORTHO05D004405 2.5e-25 119.8 251 34.7
Thecc.03G039500 Theobroma cacao HOM05D000260 ORTHO05D000318 2.5e-25 119.8 251 34.7
arahy.Tifrunner.gnm1.ann1.HVZ2A0 Arachis hypogaea HOM05D000072 ORTHO05D000026 2.3e-23 113.2 104 51.9
Lalb_Chr14g0371001 Lupinus albus HOM05D000260 ORTHO05D004405 4.0e-23 112.5 264 29.2
QL10p026197 Quercus lobata HOM05D000260 ORTHO05D004405 8.9e-23 111.3 123 43.9
Haze_18720 Corylus avellana HOM05D000260 ORTHO05D004405 1.5e-22 110.5 108 51.9
arahy.Tifrunner.gnm1.ann1.A5PQY8 Arachis hypogaea HOM05D000072 ORTHO05D000026 2.0e-22 110.2 101 51.5
Cfa019742 Carpinus fangiana HOM05D000260 ORTHO05D000318 3.4e-22 109.4 112 50.9
Phvul.002G318200 Phaseolus vulgaris HOM05D000072 ORTHO05D000026 9.9e-22 107.8 103 51.5
TAR629G0876 Trochodendron aralioides HOM05D000260 ORTHO05D004405 1.3e-21 107.5 118 45.8
VMungo0251G3030 Vigna mungo HOM05D000072 ORTHO05D000026 1.3e-21 107.5 125 45.6
QL10p025892 Quercus lobata HOM05D000260 ORTHO05D004405 4.9e-21 105.5 119 44.5
Lj2g0001936 Lotus japonicus HOM05D000260 ORTHO05D000318 6.4e-21 105.1 110 48.2
Nitab4.5_0006493g0010 Nicotiana tabacum HOM05D000260 ORTHO05D000318 1.4e-20 104.0 223 33.2
DCAR_015152 Daucus carota HOM05D000260 ORTHO05D000318 1.9e-20 103.6 259 32.4
Glyma.07G096000 Glycine max HOM05D000260 ORTHO05D004405 3.2e-20 102.8 261 29.1
arahy.Tifrunner.gnm1.ann1.FT6SUY Arachis hypogaea HOM05D000072 ORTHO05D000026 7.1e-20 101.7 124 41.9
TAR629G1802 Trochodendron aralioides HOM05D000260 ORTHO05D004405 9.2e-20 101.3 124 44.4
arahy.Tifrunner.gnm1.ann1.42LL83 Arachis hypogaea HOM05D000072 ORTHO05D000026 1.2e-19 100.9 250 29.6
PGSC0003DMG401005729 Solanum tuberosum HOM05D000260 ORTHO05D000318 1.6e-19 100.5 240 30.4
Rhsim12G0142700 Rhododendron simsii HOM05D000260 ORTHO05D000318 2.7e-19 99.8 259 34.4
Dinv28134 Davidia involucrata HOM05D000260 ORTHO05D004405 6.0e-19 98.6 255 32.5
Solyc03g119230.1 Solanum lycopersicum HOM05D000260 ORTHO05D004405 6.0e-19 98.6 244 29.5
Glyma.07G095200 Glycine max HOM05D000072 ORTHO05D000026 7.8e-19 98.2 246 28.5
Nitab4.5_0001536g0020 Nicotiana tabacum HOM05D000260 ORTHO05D000318 7.8e-19 98.2 106 41.5
Sopen03g038120 Solanum pennellii HOM05D000260 ORTHO05D000318 1.0e-18 97.8 235 28.9
Sopen12g016640 Solanum pennellii HOM05D000260 ORTHO05D004405 2.3e-18 96.7 270 29.3
Solyc12g036320.3 Solanum lycopersicum HOM05D000260 ORTHO05D004405 8.6e-18 94.7 251 31.5
Glyma.08G044300 Glycine max HOM05D000072 ORTHO05D000026 1.1e-17 94.4 112 46.4
Nitab4.5_0008832g0030 Nicotiana tabacum HOM05D000260 ORTHO05D000318 1.1e-17 94.4 104 46.2
CiPaw.16G088300 Carya illinoinensis HOM05D000260 ORTHO05D000318 4.3e-17 92.4 109 46.8
PGSC0003DMG400015839 Solanum tuberosum HOM05D000260 ORTHO05D004405 1.2e-16 90.9 248 29.4
PGSC0003DMG401015827 Solanum tuberosum HOM05D000260 ORTHO05D004405 1.2e-16 90.9 248 29.4
Peaxi162Scf00683g00037 Petunia axillaris HOM05D000072 ORTHO05D000318 1.6e-16 90.5 103 41.7
Phvul.004G154700 Phaseolus vulgaris HOM05D000260 ORTHO05D004405 1.6e-16 90.5 101 44.6
VMungo0464G0601 Vigna mungo HOM05D000260 ORTHO05D004405 1.6e-16 90.5 116 43.1
CAN.G1129.6 Capsicum annuum HOM05D000260 ORTHO05D004405 2.1e-16 90.1 123 40.7
Medtr6g082990 Medicago truncatula HOM05D000260 ORTHO05D004405 2.1e-16 90.1 128 39.8
Nitab4.5_0009862g0010 Nicotiana tabacum HOM05D000072 ORTHO05D000026 2.8e-16 89.7 103 41.7
Eucgr.B00797 Eucalyptus grandis HOM05D000260 ORTHO05D004405 3.6e-16 89.4 106 47.2
CiPaw.16G088400 Carya illinoinensis HOM05D000013 ORTHO05D000506 6.2e-16 88.6 107 46.7
Peaxi162Scf00634g00516 Petunia axillaris HOM05D000072 ORTHO05D000026 2.4e-15 86.7 102 45.1
Peaxi162Scf00634g00518 Petunia axillaris HOM05D000260 ORTHO05D000318 2.4e-15 86.7 102 45.1
Peaxi162Scf79860g00002 Petunia axillaris HOM05D000260 ORTHO05D004405 2.4e-15 86.7 102 45.1
Nn4g23935 Nelumbo nucifera HOM05D000260 ORTHO05D004405 3.1e-15 86.3 126 38.1
Hma1.2p1_0013F.1_g008560 Hydrangea macrophylla HOM05D000260 ORTHO05D004405 6.8e-15 85.1 242 29.8
Eucgr.L01501 Eucalyptus grandis HOM05D000260 ORTHO05D004405 8.9e-15 84.7 131 40.5
Eucgr.B00789 Eucalyptus grandis HOM05D000260 ORTHO05D004405 1.5e-14 84.0 145 40.0
Eucgr.B00779 Eucalyptus grandis HOM05D000260 ORTHO05D004405 2.0e-14 83.6 103 45.6
Psat1g035960 Pisum sativum HOM05D000260 ORTHO05D004405 2.0e-14 83.6 119 37.8
Cc04_g06930 Coffea canephora HOM05D000260 ORTHO05D000318 3.4e-14 82.8 139 39.6
Eucgr.B00771 Eucalyptus grandis HOM05D000260 ORTHO05D004405 3.4e-14 82.8 131 38.9
MBI09_g25171_MAGBIO Magnolia biondii HOM05D000260 ORTHO05D000318 3.4e-14 82.8 249 27.7
Eucgr.B00762 Eucalyptus grandis HOM05D000260 ORTHO05D004405 4.4e-14 82.4 131 38.9
QL06p012226 Quercus lobata HOM05D000260 ORTHO05D004405 4.4e-14 82.4 103 44.7
TAR362G0285 Trochodendron aralioides HOM05D000260 ORTHO05D004405 5.8e-14 82.0 247 30.0
Haze_18706 Corylus avellana HOM05D000260 ORTHO05D004405 2.2e-13 80.1 79 49.4
Cc04_g06940 Coffea canephora HOM05D000072 ORTHO05D000026 3.8e-13 79.3 120 40.0
Nitab4.5_0000208g0400 Nicotiana tabacum HOM05D000260 ORTHO05D000318 3.8e-13 79.3 97 41.2
Eucgr.B00805 Eucalyptus grandis HOM05D000260 ORTHO05D004405 4.9e-13 79.0 129 39.5
Eucgr.B00750 Eucalyptus grandis HOM05D000260 ORTHO05D004405 8.4e-13 78.2 101 47.5
Nn5g27777 Nelumbo nucifera HOM05D000072 ORTHO05D004405 1.1e-12 77.8 101 38.6
Sabra10G0112200 Salix brachista HOM05D000260 ORTHO05D004405 1.1e-12 77.8 112 42.9
Potri.010G145400 Populus trichocarpa HOM05D000260 ORTHO05D004405 1.9e-12 77.0 112 42.0
Dinv06158 Davidia involucrata HOM05D000260 ORTHO05D000318 4.2e-12 75.9 112 42.0
Lsat_1_v5_gn_8_143940 Lactuca sativa HOM05D000260 ORTHO05D000318 7.1e-12 75.1 154 30.5
GSVIVG01034995001 Vitis vinifera HOM05D000260 ORTHO05D004405 1.2e-11 74.3 145 35.2
Lsat_1_v5_gn_8_143900 Lactuca sativa HOM05D000260 ORTHO05D004405 1.6e-11 73.9 111 41.4
Lsat_1_v5_gn_8_142680 Lactuca sativa HOM05D000260 ORTHO05D004405 2.1e-11 73.6 237 25.3
Nitab4.5_0009862g0020 Nicotiana tabacum HOM05D000072 ORTHO05D000026 2.1e-11 73.6 95 40.0
Manes.15G004500 Manihot esculenta HOM05D000260 ORTHO05D004405 1.7e-10 70.5 130 37.7
COL.COLO4_34618 Corchorus olitorius HOM05D000260 ORTHO05D004405 3.0e-10 69.7 118 39.0
CDE06G0453 Ceratophyllum demersum HOM05D000260 ORTHO05D000318 3.3e-09 66.2 123 30.1
Oeu063001.1 Olea europaea HOM05D000072 ORTHO05D000026 1.2e-08 64.3 97 37.1
Dinv00976 Davidia involucrata HOM05D000260 ORTHO05D000318 1.6e-08 63.9 117 35.9
TAR627G0833 Trochodendron aralioides HOM05D000260 ORTHO05D004405 2.1e-08 63.5 71 49.3
Dinv01101 Davidia involucrata HOM05D000260 ORTHO05D004405 4.7e-08 62.4 120 37.5
HanXRQChr05g0131351 Helianthus annuus HOM05D000072 ORTHO05D000026 1.4e-07 60.8 78 42.3
RcHm_v2.0_Chr6g0264401 Rosa chinensis HOM05D000260 ORTHO05D000318 1.4e-07 60.8 95 33.7
Hund02379 Selenicereus undatus HOM05D000260 ORTHO05D000318 1.4e-07 60.8 129 32.6
FAN15G2298 Fragaria x ananassa HOM05D000260 ORTHO05D000318 3.1e-07 59.7 160 26.9
SalBow8G3654 Salvia bowleyana HOM05D008908 ORTHO05D010362 4.0e-07 59.3 73 39.7
CDE06G0084 Ceratophyllum demersum HOM05D000260 ORTHO05D004405 6.9e-07 58.5 106 34.0
Dinv02372 Davidia involucrata HOM05D000260 ORTHO05D004405 6.9e-07 58.5 56 53.6
Eucgr.F02104 Eucalyptus grandis HOM05D000260 ORTHO05D000318 6.9e-07 58.5 87 29.9
Potri.017G117340 Populus trichocarpa HOM05D000072 ORTHO05D000026 9.0e-07 58.2 126 28.6
MD00G1204100 Malus domestica HOM05D000260 ORTHO05D000318 1.2e-06 57.8 199 24.1
Ca_08086_v3 Cicer arietinum L. HOM05D000260 ORTHO05D000318 1.5e-06 57.4 155 26.5
Sabra04G0065500 Salix brachista HOM05D000260 ORTHO05D000318 1.5e-06 57.4 81 38.3
ATR1125G048 Amborella trichopoda HOM05D000260 ORTHO05D004405 2.6e-06 56.6 101 34.7
Dinv03559 Davidia involucrata HOM05D000056 ORTHO05D000019 2.6e-06 56.6 57 50.9
HPP92_021593 Vanilla planifolia HOM05D000260 ORTHO05D000318 2.6e-06 56.6 172 30.2
Dinv15172 Davidia involucrata HOM05D000260 ORTHO05D004405 3.4e-06 56.2 88 38.6
MD17G1247800 Malus domestica HOM05D000260 ORTHO05D000318 3.4e-06 56.2 85 34.1
Medtr7g082533 Medicago truncatula HOM05D000260 ORTHO05D000318 3.4e-06 56.2 76 36.8
Migut.L01039 Erythranthe guttata HOM05D000072 ORTHO05D000026 4.4e-06 55.8 100 33.0
Lj2P833T28 Lonicera japonica HOM05D000260 ORTHO05D004405 4.4e-06 55.8 73 38.4
Gohir.A01G052200 Gossypium hirsutum HOM05D000072 ORTHO05D000026 5.8e-06 55.5 156 27.6
Sabra04G0050600 Salix brachista HOM05D000260 ORTHO05D004405 5.8e-06 55.5 100 31.0
Eucgr.B00809 Eucalyptus grandis HOM05D000072 ORTHO05D193438 7.6e-06 55.1 47 53.2
MBI16_g37128_MAGBIO Magnolia biondii HOM05D000260 ORTHO05D004405 7.6e-06 55.1 65 36.9
Oeu027007.1 Olea europaea HOM05D000072 ORTHO05D000026 7.6e-06 55.1 73 35.6
SalBow8G1282 Salvia bowleyana HOM05D000260 ORTHO05D000318 7.6e-06 55.1 81 35.8
Hund10291 Selenicereus undatus HOM05D000260 ORTHO05D000318 7.6e-06 55.1 79 34.2
Oeu027004.1 Olea europaea HOM05D000260 ORTHO05D000318 9.9e-06 54.7 73 35.6


User provided reference genes

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