Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G2629 Fragaria x ananassa HOM05D005199 ORTHO05D006277 2.3e-195 685.6 415 100.0
FAN13G0330 Fragaria x ananassa HOM05D005199 ORTHO05D006277 3.8e-190 668.3 415 94.5
FAN18G4150 Fragaria x ananassa HOM05D005199 ORTHO05D006277 1.2e-188 663.3 415 97.1
FAN08G3145 Fragaria x ananassa HOM05D005199 ORTHO05D006277 4.6e-188 661.4 416 94.2
RcHm_v2.0_Chr7g0188591 Rosa chinensis HOM05D005199 ORTHO05D006277 2.0e-175 619.4 417 89.7
Prupe.5G140700 Prunus persica HOM05D005199 ORTHO05D006277 2.4e-144 516.2 424 68.9
MD14G1146700 Malus domestica HOM05D005199 ORTHO05D006277 1.3e-142 510.4 421 74.3
MD06G1129500 Malus domestica HOM05D005199 ORTHO05D006277 2.3e-142 509.6 420 65.2
Haze_07093 Corylus avellana HOM05D005199 ORTHO05D006277 1.6e-140 503.4 406 73.9
Manes.06G127100 Manihot esculenta HOM05D005199 ORTHO05D006277 2.3e-139 499.6 416 71.9
CiPaw.12G000800 Carya illinoinensis HOM05D005199 ORTHO05D006277 4.0e-139 498.8 417 65.7
QL10p000401 Quercus lobata HOM05D005199 ORTHO05D006277 2.9e-137 492.7 417 68.1
Sabra15G0129500 Salix brachista HOM05D005199 ORTHO05D006277 2.9e-137 492.7 430 61.9
Cfa018703 Carpinus fangiana HOM05D005199 ORTHO05D006277 6.4e-137 491.5 406 64.8
Sabra15G0127400 Salix brachista HOM05D005199 ORTHO05D006277 6.4e-137 491.5 430 61.6
GSVIVG01008655001 Vitis vinifera HOM05D005199 ORTHO05D006277 8.3e-137 491.1 419 72.1
TWI39G0590 Tripterygium wilfordii HOM05D005199 ORTHO05D006277 5.4e-136 488.4 415 67.0
SalBow7G2845 Salvia bowleyana HOM05D005199 ORTHO05D006277 2.7e-135 486.1 416 74.5
Ciclev10033942m.g Citrus clementina HOM05D005199 ORTHO05D006277 3.5e-135 485.7 411 64.5
Thecc.03G141200 Theobroma cacao HOM05D005199 ORTHO05D006277 1.3e-134 483.8 409 70.4
CAN.G843.7 Capsicum annuum HOM05D005199 ORTHO05D006277 2.3e-134 483.0 424 74.8
Nn3g16267 Nelumbo nucifera HOM05D005199 ORTHO05D006277 2.3e-134 483.0 412 69.7
Medtr3g098560 Medicago truncatula HOM05D005199 ORTHO05D006277 3.0e-134 482.6 410 70.0
Potri.015G106900 Populus trichocarpa HOM05D005199 ORTHO05D006277 3.9e-134 482.3 424 61.6
Peaxi162Scf00314g00633 Petunia axillaris HOM05D005199 ORTHO05D006277 1.5e-133 480.3 415 75.7
Sopen03g037080 Solanum pennellii HOM05D005199 ORTHO05D006277 2.5e-133 479.6 417 74.8
Duzib205G1536 Durio zibethinus HOM05D005199 ORTHO05D006277 5.6e-133 478.4 416 69.0
FAN21G1800 Fragaria x ananassa HOM05D005199 ORTHO05D006277 3.6e-132 475.7 411 69.1
CSS0050347 Camellia sinensis var. sinensis HOM05D005199 ORTHO05D006277 8.0e-132 474.6 419 76.6
Manes.14G044200 Manihot esculenta HOM05D005199 ORTHO05D006277 1.0e-131 474.2 406 69.5
SGA_v2.0_scaffold37G14675 Striga asiatica HOM05D005199 ORTHO05D006277 1.0e-131 474.2 416 72.8
Ca_10877_v3 Cicer arietinum L. HOM05D005199 ORTHO05D006277 1.8e-131 473.4 410 69.5
Nitab4.5_0000976g0090 Nicotiana tabacum HOM05D005199 ORTHO05D006277 6.8e-131 471.5 425 74.6
Psat5g056040 Pisum sativum HOM05D005199 ORTHO05D006277 8.9e-131 471.1 410 69.8
Rhsim08G0198200 Rhododendron simsii HOM05D005199 ORTHO05D006277 1.2e-130 470.7 417 68.6
Atru.chr6.1926 Acer truncatum HOM05D005199 ORTHO05D006277 1.5e-130 470.3 408 71.1
Lj1g0022547 Lotus japonicus HOM05D005199 ORTHO05D006277 2.0e-130 469.9 409 72.6
FvH4_3g03530 Fragaria vesca HOM05D005199 ORTHO05D006277 2.6e-130 469.5 410 69.8
FAN11G0489 Fragaria x ananassa HOM05D005199 ORTHO05D006277 2.6e-130 469.5 410 69.0
Migut.I00669 Erythranthe guttata HOM05D005199 ORTHO05D006277 3.4e-130 469.2 418 73.2
FAN25G0693 Fragaria x ananassa HOM05D005199 ORTHO05D006277 4.4e-130 468.8 433 69.1
Dinv13715 Davidia involucrata HOM05D005199 ORTHO05D006277 5.8e-130 468.4 401 69.8
Cc04_g05820 Coffea canephora HOM05D005199 ORTHO05D006277 2.9e-129 466.1 419 61.8
FvH4_3g04170 Fragaria vesca HOM05D005199 ORTHO05D006277 3.7e-129 465.7 419 70.9
HanXRQChr09g0273821 Helianthus annuus HOM05D005199 ORTHO05D006277 4.9e-129 465.3 408 63.7
Nitab4.5_0011600g0020 Nicotiana tabacum HOM05D005199 ORTHO05D006277 1.4e-128 463.8 398 77.4
FAN11G0779 Fragaria x ananassa HOM05D005199 ORTHO05D006277 2.4e-128 463.0 417 70.7
VMungo1309G0841 Vigna mungo HOM05D005199 ORTHO05D006277 3.2e-128 462.6 416 70.0
Hma1.2p1_0577F.1_g182220 Hydrangea macrophylla HOM05D005199 ORTHO05D006277 4.6e-127 458.8 397 71.5
Dinv23231 Davidia involucrata HOM05D005199 ORTHO05D006277 7.8e-127 458.0 416 71.2
Glyma.06G163600 Glycine max HOM05D005199 ORTHO05D006277 1.3e-126 457.2 413 67.8
ECA232G4131 Erigeron canadensis HOM05D005199 ORTHO05D006277 3.9e-126 455.7 421 58.7
vmacro19190 Vaccinium macrocarpon HOM05D005199 ORTHO05D006277 3.9e-126 455.7 413 72.2
TWI14G0958 Tripterygium wilfordii HOM05D005199 ORTHO05D006277 5.0e-126 455.3 419 66.6
Actinidia25514 Actinidia chinensis HOM05D005199 ORTHO05D006277 7.3e-125 451.4 407 68.8
Oeu013661.1 Olea europaea HOM05D005199 ORTHO05D006277 1.6e-124 450.3 409 67.0
TAR374G0192 Trochodendron aralioides HOM05D005199 ORTHO05D006277 2.8e-124 449.5 396 69.9
Gohir.A07G046500 Gossypium hirsutum HOM05D005199 ORTHO05D006277 1.7e-121 440.3 417 65.0
Phvul.009G160900 Phaseolus vulgaris HOM05D005199 ORTHO05D006277 4.9e-121 438.7 414 69.8
Duzib084G1266 Durio zibethinus HOM05D005199 ORTHO05D006277 3.2e-120 436.0 407 62.4
arahy.Tifrunner.gnm1.ann1.4TKD14 Arachis hypogaea HOM05D005199 ORTHO05D006277 3.0e-118 429.5 415 66.7
Cpa.g.sc13.181 Carica papaya HOM05D005199 ORTHO05D006277 1.1e-117 427.6 417 56.8
SHI14097 Sapria himalayana HOM05D005199 ORTHO05D006277 2.5e-117 426.4 460 52.0
CDE02G3820 Ceratophyllum demersum HOM05D005199 ORTHO05D006277 2.1e-116 423.3 424 54.2
Gohir.D07G050800 Gossypium hirsutum HOM05D005199 ORTHO05D006277 4.7e-116 422.2 417 64.5
CDE06G1181 Ceratophyllum demersum HOM05D005199 ORTHO05D006277 1.1e-115 421.0 411 55.0
Gorai.001G053900 Gossypium raimondii HOM05D005199 ORTHO05D006277 1.1e-115 421.0 417 67.9
COL.COLO4_37264 Corchorus olitorius HOM05D005199 ORTHO05D006277 3.1e-115 419.5 380 70.8
arahy.Tifrunner.gnm1.ann1.P6GRAY Arachis hypogaea HOM05D005199 ORTHO05D006277 1.5e-114 417.2 410 62.4
DCAR_025645 Daucus carota HOM05D005199 ORTHO05D006277 3.4e-114 416.0 406 62.1
Aa31LG11G1640 Aethionema arabicum HOM05D005199 ORTHO05D006277 2.9e-113 412.9 413 60.5
MELO3C026157.2 Cucumis melo HOM05D005199 ORTHO05D006277 1.4e-112 410.6 410 65.9
FvH4_5g09660 Fragaria vesca HOM05D005199 ORTHO05D006277 1.9e-112 410.2 291 96.9
THA.LOC104818285 Tarenaya hassleriana HOM05D005199 ORTHO05D006277 1.9e-112 410.2 421 64.1
Lsat_1_v5_gn_4_84380 Lactuca sativa HOM05D005199 ORTHO05D006277 4.1e-112 409.1 420 57.9
BcaC01g02441 Brassica carinata HOM05D005199 ORTHO05D006277 5.4e-112 408.7 423 57.7
PGR102G3000 Punica granatum HOM05D005199 ORTHO05D006277 1.2e-111 407.5 396 65.2
CsaV3_1G000050 Cucumis sativus L. HOM05D005199 ORTHO05D006277 1.6e-111 407.1 410 65.9
BcaB02g09607 Brassica carinata HOM05D005199 ORTHO05D006277 2.1e-111 406.8 415 61.0
THA.LOC104801769 Tarenaya hassleriana HOM05D005199 ORTHO05D006277 2.1e-111 406.8 433 57.7
A06p28520 Brassica napus HOM05D005199 ORTHO05D006277 2.7e-111 406.4 419 58.5
BraA06t25798Z Brassica rapa HOM05D005199 ORTHO05D006277 2.7e-111 406.4 419 58.5
ClCG06G018380 Citrullus lanatus HOM05D005199 ORTHO05D006277 2.7e-111 406.4 360 72.5
DCAR_016338 Daucus carota HOM05D005199 ORTHO05D006277 1.3e-110 404.1 423 54.4
C03p65260 Brassica napus HOM05D005199 ORTHO05D006277 3.0e-110 402.9 427 57.1
BolC3t18779H Brassica oleracea HOM05D005199 ORTHO05D006277 3.0e-110 402.9 427 57.1
A02p41740 Brassica napus HOM05D005199 ORTHO05D006277 3.9e-110 402.5 417 65.9
C02p61660 Brassica napus HOM05D005199 ORTHO05D006277 3.9e-110 402.5 417 66.7
BcaB07g29818 Brassica carinata HOM05D005199 ORTHO05D006277 6.6e-110 401.7 419 63.2
BcaC03g18101 Brassica carinata HOM05D005199 ORTHO05D006277 6.6e-110 401.7 417 66.7
Carub.0008s2255 Capsella rubella HOM05D005199 ORTHO05D006277 8.6e-110 401.4 417 63.8
Thhalv10005606m.g Eutrema salsugineum HOM05D005199 ORTHO05D006277 1.1e-109 401.0 417 65.0
Sp2g25050 Schrenkiella parvula HOM05D005199 ORTHO05D006277 3.3e-109 399.4 419 56.6
Lj9A487G53 Lonicera japonica HOM05D005199 ORTHO05D006277 7.3e-109 398.3 382 57.1
BraA02t09114Z Brassica rapa HOM05D005199 ORTHO05D006277 2.1e-108 396.7 421 65.3
CARHR275620 Cardamine hirsuta HOM05D005199 ORTHO05D006277 2.8e-108 396.4 415 65.5
BolC2t12224H Brassica oleracea HOM05D005199 ORTHO05D006277 3.6e-108 396.0 421 66.0
MBI10_g44970_MAGBIO Magnolia biondii HOM05D005199 ORTHO05D006277 6.2e-108 395.2 354 70.6
EL10Ac5g11279 Beta vulgaris HOM05D005199 ORTHO05D006277 4.0e-107 392.5 414 53.6
Eucgr.K02192 Eucalyptus grandis HOM05D005199 ORTHO05D006277 6.9e-107 391.7 362 57.7
AT5G61850 Arabidopsis thaliana HOM05D005199 ORTHO05D006277 2.6e-106 389.8 419 56.8
AL8G38620 Arabidopsis lyrata HOM05D005199 ORTHO05D006277 5.8e-106 388.7 419 65.2
unitig_0.g1099 Utricularia gibba HOM05D005199 ORTHO05D006277 3.8e-105 386.0 317 65.0
unitig_61.g26224 Utricularia gibba HOM05D005199 ORTHO05D006277 1.9e-104 383.6 299 74.2
Aqoxy5G03105 Aquilegia oxysepala HOM05D005199 ORTHO05D006277 4.2e-104 382.5 420 56.9
PSO478G1920 Papaver somniferum HOM05D005199 ORTHO05D006277 1.2e-103 380.9 351 67.2
AUR62032216 Chenopodium quinoa HOM05D005199 ORTHO05D006277 1.6e-103 380.6 363 57.3
Sc22g0003300 Simmondsia chinensis HOM05D005199 ORTHO05D006277 1.3e-102 377.5 452 57.7
Sed0007314 Sechium edule HOM05D005199 ORTHO05D006277 1.5e-101 374.0 349 60.2
TPR.G25958 Trifolium pratense HOM05D005199 ORTHO05D006277 6.2e-100 368.6 350 63.4
arahy.Tifrunner.gnm1.ann1.33WSUR Arachis hypogaea HOM05D005199 ORTHO05D006277 3.1e-99 366.3 401 50.6
Ah.02g114560 Amaranthus hybridus HOM05D005199 ORTHO05D006277 1.5e-98 364.0 367 57.8
ATR0582G251 Amborella trichopoda HOM05D005199 ORTHO05D006277 1.4e-96 357.5 409 58.4
arahy.Tifrunner.gnm1.ann1.31D2RV Arachis hypogaea HOM05D005199 ORTHO05D006277 3.2e-96 356.3 396 49.2
SGA_v2.0_scaffold168G38552 Striga asiatica HOM05D005199 ORTHO05D006277 2.3e-94 350.1 350 53.4
Zm00001eb430240 Zea mays HOM05D005199 ORTHO05D006277 4.5e-90 335.9 351 57.3
Os04g0598300 Oryza sativa ssp. japonica HOM05D005199 ORTHO05D006277 4.9e-89 332.4 353 64.3
SEGI_03714 Sequoiadendron giganteum HOM05D005199 ORTHO05D006277 8.4e-89 331.6 389 45.5
Mapoly0113s0034 Marchantia polymorpha HOM05D005199 ORTHO05D006277 1.1e-83 314.7 347 48.1
AUR62044212 Chenopodium quinoa HOM05D005199 ORTHO05D006277 9.0e-83 311.6 439 43.5
SEGI_00497 Sequoiadendron giganteum HOM05D005199 ORTHO05D006277 3.5e-79 299.7 329 47.4
AUR62043310 Chenopodium quinoa HOM05D005199 ORTHO05D006277 4.6e-79 299.3 359 49.0
Zm00001eb071990 Zea mays HOM05D005199 ORTHO05D006277 1.8e-78 297.4 334 53.3
Migut.D01179 Erythranthe guttata HOM05D005199 ORTHO05D006277 3.3e-77 293.1 161 82.6
Lalb_Chr11g0069151 Lupinus albus HOM05D005199 ORTHO05D006277 5.7e-77 292.4 175 77.1
Pp3c3_11670 Physcomitrium patens HOM05D005199 ORTHO05D006277 2.8e-76 290.0 339 46.0
Pp3c13_8760 Physcomitrium patens HOM05D005199 ORTHO05D006277 1.7e-73 280.8 318 46.9
HPP92_021614 Vanilla planifolia HOM05D005199 ORTHO05D006277 7.9e-71 271.9 362 57.7
Lalb_Chr12g0202561 Lupinus albus HOM05D005199 ORTHO05D006277 1.9e-64 250.8 300 60.3
Lalb_Chr07g0183841 Lupinus albus HOM05D005199 ORTHO05D006277 2.5e-64 250.4 305 58.4
Glyma.04G202002 Glycine max HOM05D005199 ORTHO05D006277 3.1e-59 233.4 131 82.4
FAN25G1078 Fragaria x ananassa HOM05D005199 ORTHO05D006277 8.5e-57 225.3 255 67.1
Sabra15G0071900 Salix brachista HOM05D005199 ORTHO05D006277 8.8e-54 215.3 301 46.8
PGSC0003DMG400014174 Solanum tuberosum HOM05D005199 ORTHO05D006277 2.2e-52 210.7 124 76.6
Lalb_Chr07g0183831 Lupinus albus HOM05D005199 ORTHO05D006277 1.5e-48 198.0 113 79.6
Actinidia18295 Actinidia chinensis HOM05D005199 ORTHO05D006277 5.5e-48 196.1 167 64.1
SMO347G0183 Selaginella moellendorffii HOM05D005199 ORTHO05D006277 1.7e-44 184.5 113 70.8
CBR_g60061 Chara braunii HOM05D005199 ORTHO05D006277 5.3e-43 179.5 332 34.3
Lalb_Chr12g0202551 Lupinus albus HOM05D005199 ORTHO05D006277 1.0e-38 165.2 91 82.4
Lalb_Chr11g0069141 Lupinus albus HOM05D005199 ORTHO05D006277 7.7e-34 149.1 163 53.4
AagrBONN_evm.TU.Sc2ySwM_228.2166 Anthoceros agrestis HOM05D005199 ORTHO05D006277 8.6e-33 145.6 282 35.8
CANSAT11G1658 Cannabis sativa HOM05D005199 ORTHO05D006277 1.8e-22 111.3 80 70.0
SMO347G0146 Selaginella moellendorffii HOM05D005199 ORTHO05D006277 6.6e-17 92.8 83 53.0
CDE05G0289 Ceratophyllum demersum HOM05D000263 ORTHO05D000213 2.6e-13 80.9 40 87.5


User provided reference genes

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