Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G2599 Fragaria x ananassa HOM05D006541 ORTHO05D008471 2.3e-238 828.6 428 100.0
FAN18G0374 Fragaria x ananassa HOM05D006541 ORTHO05D008471 6.0e-231 803.9 431 97.2
FAN08G2919 Fragaria x ananassa HOM05D006541 ORTHO05D008471 5.6e-229 797.3 428 96.7
FvH4_5g15050 Fragaria vesca HOM05D006541 ORTHO05D008471 1.2e-223 779.6 431 94.7
RcHm_v2.0_Chr7g0181151 Rosa chinensis HOM05D006541 ORTHO05D008471 2.5e-213 745.3 429 90.0
Prupe.5G192200 Prunus persica HOM05D006541 ORTHO05D008471 1.2e-178 630.2 428 78.7
MD14G1199100 Malus domestica HOM05D006541 ORTHO05D008471 1.0e-174 617.1 428 76.2
MD06G1192400 Malus domestica HOM05D006541 ORTHO05D008471 1.4e-166 590.1 461 70.5
QL10p016702 Quercus lobata HOM05D006541 ORTHO05D008471 1.5e-162 576.6 434 72.4
Cfa018953 Carpinus fangiana HOM05D006541 ORTHO05D008471 9.4e-160 567.4 420 73.1
TAR629G1448 Trochodendron aralioides HOM05D006541 ORTHO05D008471 3.8e-153 545.4 425 67.5
GSVIVG01008019001 Vitis vinifera HOM05D006541 ORTHO05D008471 2.5e-152 542.7 428 67.8
Atru.chr9.2260 Acer truncatum HOM05D006541 ORTHO05D008471 6.7e-150 534.6 405 69.4
Duzib205G0457 Durio zibethinus HOM05D006541 ORTHO05D008471 6.7e-150 534.6 403 69.5
Dinv38701 Davidia involucrata HOM05D006541 ORTHO05D008471 1.1e-147 527.3 428 66.6
Glyma.17G099300 Glycine max HOM05D006541 ORTHO05D008471 4.1e-147 525.4 433 66.5
Gohir.A03G066400 Gossypium hirsutum HOM05D006541 ORTHO05D008471 1.6e-146 523.5 405 68.6
Psat4g051480 Pisum sativum HOM05D006541 ORTHO05D008471 2.7e-146 522.7 438 64.6
Thecc.03G085100 Theobroma cacao HOM05D006541 ORTHO05D008471 2.7e-146 522.7 405 69.4
CiPaw.11G043400 Carya illinoinensis HOM05D006541 ORTHO05D008471 5.9e-146 521.5 397 70.0
VMungo1215G1397 Vigna mungo HOM05D006541 ORTHO05D008471 1.3e-145 520.4 433 65.6
Lj4g0004556 Lotus japonicus HOM05D006541 ORTHO05D008471 2.2e-145 519.6 403 69.2
Eucgr.B00491 Eucalyptus grandis HOM05D006541 ORTHO05D008471 2.9e-145 519.2 431 66.1
Ciclev10020397m.g Citrus clementina HOM05D006541 ORTHO05D008471 6.5e-145 518.1 411 68.4
Phvul.003G190700 Phaseolus vulgaris HOM05D006541 ORTHO05D008471 4.2e-144 515.4 409 68.0
Lalb_Chr07g0178001 Lupinus albus HOM05D006541 ORTHO05D008471 4.7e-143 511.9 389 68.6
Ca_21826_v3 Cicer arietinum L. HOM05D006541 ORTHO05D008471 6.1e-143 511.5 432 64.6
Medtr4g108590 Medicago truncatula HOM05D006541 ORTHO05D008471 1.0e-142 510.8 438 64.2
arahy.Tifrunner.gnm1.ann1.84ES4F Arachis hypogaea HOM05D006541 ORTHO05D008471 5.2e-142 508.4 427 64.2
Nn4g23149 Nelumbo nucifera HOM05D006541 ORTHO05D008471 8.8e-142 507.7 428 63.3
arahy.Tifrunner.gnm1.ann1.ZY6HCY Arachis hypogaea HOM05D006541 ORTHO05D008471 1.5e-141 506.9 427 63.9
TAR371G1054 Trochodendron aralioides HOM05D006541 ORTHO05D008471 9.8e-141 504.2 390 66.9
Gohir.D03G093000 Gossypium hirsutum HOM05D006541 ORTHO05D008471 1.3e-140 503.8 397 68.3
Gorai.003G096900 Gossypium raimondii HOM05D006541 ORTHO05D008471 3.7e-140 502.3 436 63.3
TWI60G0844 Tripterygium wilfordii HOM05D006541 ORTHO05D008471 6.3e-140 501.5 404 66.3
Nitab4.5_0012137g0020 Nicotiana tabacum HOM05D006541 ORTHO05D008471 1.8e-139 500.0 443 61.2
PGR083G1696 Punica granatum HOM05D006541 ORTHO05D008471 1.2e-138 497.3 426 64.3
MBI05_g08285_MAGBIO Magnolia biondii HOM05D006541 ORTHO05D008471 1.6e-138 496.9 428 61.4
Nitab4.5_0000842g0050 Nicotiana tabacum HOM05D006541 ORTHO05D008471 3.5e-138 495.7 443 60.5
Hma1.2p1_0104F.1_g049970 Hydrangea macrophylla HOM05D006541 ORTHO05D008471 2.9e-137 492.7 378 69.0
THA.LOC104821445 Tarenaya hassleriana HOM05D006541 ORTHO05D008471 1.1e-136 490.7 433 61.4
TPR.G34732 Trifolium pratense HOM05D006541 ORTHO05D008471 1.1e-136 490.7 442 61.8
Lj5A111T86 Lonicera japonica HOM05D006541 ORTHO05D008471 1.5e-136 490.3 398 67.3
Haze_07335 Corylus avellana HOM05D006541 ORTHO05D008471 1.9e-136 490.0 384 70.8
PSO063G0566 Papaver somniferum HOM05D006541 ORTHO05D008471 4.7e-135 485.3 420 60.7
Peaxi162Scf00274g00732 Petunia axillaris HOM05D006541 ORTHO05D008471 8.0e-135 484.6 442 60.2
CAN.G837.10 Capsicum annuum HOM05D006541 ORTHO05D008471 5.2e-134 481.9 439 61.7
CANSAT25G3319 Cannabis sativa HOM05D006541 ORTHO05D008471 3.7e-132 475.7 432 62.0
Rhsim08G0155500 Rhododendron simsii HOM05D006541 ORTHO05D008471 3.7e-132 475.7 365 67.1
AL5G26900 Arabidopsis lyrata HOM05D006541 ORTHO05D008471 2.4e-131 473.0 424 62.0
Sopen03g035110 Solanum pennellii HOM05D006541 ORTHO05D008471 2.4e-131 473.0 415 61.9
Solyc03g116140.3 Solanum lycopersicum HOM05D006541 ORTHO05D008471 1.6e-130 470.3 409 62.6
Sp5g14300 Schrenkiella parvula HOM05D006541 ORTHO05D008471 1.3e-129 467.2 425 60.7
BolC3t19470H Brassica oleracea HOM05D006541 ORTHO05D008471 2.9e-129 466.1 426 60.8
Oeu006508.1 Olea europaea HOM05D006541 ORTHO05D008471 2.9e-129 466.1 389 63.5
AT3G47610 Arabidopsis thaliana HOM05D006541 ORTHO05D008471 5.0e-129 465.3 424 61.3
Thhalv10010423m.g Eutrema salsugineum HOM05D006541 ORTHO05D008471 5.0e-129 465.3 427 59.7
Hund02657 Selenicereus undatus HOM05D006541 ORTHO05D008471 1.9e-128 463.4 424 60.8
Carub.0005s1374 Capsella rubella HOM05D006541 ORTHO05D008471 2.5e-128 463.0 424 60.4
A06p20010 Brassica napus HOM05D006541 ORTHO05D008471 3.3e-128 462.6 425 60.9
BraA06t25087Z Brassica rapa HOM05D006541 ORTHO05D008471 3.3e-128 462.6 425 60.9
CARHR156290 Cardamine hirsuta HOM05D006541 ORTHO05D008471 4.3e-128 462.2 426 60.6
Cc04_g16740 Coffea canephora HOM05D006541 ORTHO05D008471 5.6e-128 461.8 400 63.2
MSTRG.11386 Avicennia marina HOM05D006541 ORTHO05D008471 9.5e-128 461.1 383 64.5
BcaB01g00902 Brassica carinata HOM05D006541 ORTHO05D008471 1.6e-127 460.3 392 63.5
BcaC01g01798 Brassica carinata HOM05D006541 ORTHO05D008471 3.6e-127 459.1 426 60.3
C03p71820 Brassica napus HOM05D006541 ORTHO05D008471 3.6e-127 459.1 426 60.3
PGSC0003DMG400019513 Solanum tuberosum HOM05D006541 ORTHO05D008471 6.1e-127 458.4 409 61.4
Aqoxy3G03367 Aquilegia oxysepala HOM05D006541 ORTHO05D008471 1.0e-126 457.6 427 60.0
DCAR_016545 Daucus carota HOM05D006541 ORTHO05D008471 7.5e-125 451.4 392 64.0
Sabra12G0049100 Salix brachista HOM05D006541 ORTHO05D008471 1.9e-123 446.8 480 55.8
AUR62021701 Chenopodium quinoa HOM05D006541 ORTHO05D008471 4.1e-123 445.7 423 58.4
AUR62008395 Chenopodium quinoa HOM05D006541 ORTHO05D008471 9.2e-123 444.5 423 58.2
Lsat_1_v5_gn_1_13281 Lactuca sativa HOM05D006541 ORTHO05D008471 9.2e-123 444.5 388 62.1
ClCG04G012330 Citrullus lanatus HOM05D006541 ORTHO05D008471 2.0e-122 443.4 373 65.7
Potri.012G068900 Populus trichocarpa HOM05D006541 ORTHO05D008471 2.0e-122 443.4 389 63.8
MELO3C001974.2 Cucumis melo HOM05D006541 ORTHO05D008471 6.0e-122 441.8 367 65.9
CsaV3_1G005390 Cucumis sativus L. HOM05D006541 ORTHO05D008471 6.0e-122 441.8 348 68.1
Actinidia37633 Actinidia chinensis HOM05D006541 ORTHO05D008471 7.8e-122 441.4 396 61.6
Ah.11g048540 Amaranthus hybridus HOM05D006541 ORTHO05D008471 1.0e-121 441.0 421 59.4
HPP92_016797 Vanilla planifolia HOM05D006541 ORTHO05D008471 3.9e-121 439.1 399 60.4
HPP92_016827 Vanilla planifolia HOM05D006541 ORTHO05D008471 3.3e-120 436.0 399 60.2
SGA_v2.0_scaffold25G10913 Striga asiatica HOM05D006541 ORTHO05D008471 5.6e-120 435.3 395 60.5
HanXRQChr02g0041061 Helianthus annuus HOM05D006541 ORTHO05D008471 9.5e-120 434.5 388 60.8
CDE06G2127 Ceratophyllum demersum HOM05D006541 ORTHO05D008471 2.1e-119 433.3 429 56.2
COL.COLO4_24520 Corchorus olitorius HOM05D000087 ORTHO05D008471 3.6e-119 432.6 391 62.9
Cpa.g.c35819 Carica papaya HOM05D006541 ORTHO05D008471 6.2e-119 431.8 370 63.2
Sc12g0006320 Simmondsia chinensis HOM05D006541 ORTHO05D008471 4.0e-118 429.1 423 59.1
CSS0042048 Camellia sinensis var. sinensis HOM05D006541 ORTHO05D008471 4.4e-117 425.6 400 60.8
CSS0004518 Camellia sinensis var. sinensis HOM05D006541 ORTHO05D008471 1.7e-116 423.7 429 57.6
EL10Ac5g10987 Beta vulgaris HOM05D006541 ORTHO05D008471 3.7e-116 422.5 395 58.5
ECA247G0129 Erigeron canadensis HOM05D006541 ORTHO05D008471 1.6e-114 417.2 391 58.1
BcaB05g23063 Brassica carinata HOM05D006541 ORTHO05D008471 2.1e-114 416.8 421 55.6
Migut.I00173 Erythranthe guttata HOM05D006541 ORTHO05D008471 7.8e-114 414.8 379 59.9
Manes.06G093400 Manihot esculenta HOM05D006541 ORTHO05D008471 1.0e-113 414.5 359 64.3
Sed0004898 Sechium edule HOM05D006541 ORTHO05D008471 1.2e-111 407.5 348 64.4
ATR0598G034 Amborella trichopoda HOM05D006541 ORTHO05D008471 5.8e-109 398.7 410 55.1
Hma1.2p1_0104F.1_g049980 Hydrangea macrophylla HOM05D006541 ORTHO05D008471 9.2e-107 391.3 339 65.2
Aa31LG4G16360 Aethionema arabicum HOM05D006541 ORTHO05D008471 3.6e-103 379.4 462 49.4
unitig_0.g2528 Utricularia gibba HOM05D006541 ORTHO05D008471 1.4e-102 377.5 378 55.8
vmacro17549 Vaccinium macrocarpon HOM05D006541 ORTHO05D008471 7.1e-99 365.2 414 50.7
Actinidia04898 Actinidia chinensis HOM05D006541 ORTHO05D008471 4.8e-87 325.9 255 69.4
Zm00001eb312480 Zea mays HOM05D006541 ORTHO05D008471 2.1e-82 310.5 305 55.7
Mapoly0060s0059 Marchantia polymorpha HOM05D006541 ORTHO05D003603 3.1e-78 296.6 445 41.8
Pp3c16_180 Physcomitrium patens HOM05D006541 ORTHO05D003603 2.0e-77 293.9 446 42.2
Pp3c16_188 Physcomitrium patens HOM05D006541 ORTHO05D003603 2.0e-77 293.9 446 42.2
AagrBONN_evm.TU.Sc2ySwM_228.4960 Anthoceros agrestis HOM05D006541 ORTHO05D008471 3.9e-73 279.6 402 44.0
SEGI_30902 Sequoiadendron giganteum HOM05D006541 ORTHO05D008471 6.7e-73 278.9 367 46.3
Potri.003G168100 Populus trichocarpa HOM05D006541 ORTHO05D008471 2.3e-65 253.8 158 81.6
CBR_g8828 Chara braunii HOM05D003341 ORTHO05D003603 8.5e-36 155.6 397 32.7
Cpa.g.sc111.3 Carica papaya HOM05D006541 ORTHO05D008471 2.0e-32 144.4 127 58.3
SEGI_16548 Sequoiadendron giganteum HOM05D003341 ORTHO05D003603 7.5e-32 142.5 343 33.2
Actinidia04899 Actinidia chinensis HOM05D006541 ORTHO05D008471 4.8e-31 139.8 122 57.4
Os09g0413100 Oryza sativa ssp. japonica HOM05D006541 ORTHO05D008471 3.2e-27 127.1 141 47.5
Sed0007979 Sechium edule HOM05D006541 ORTHO05D008471 6.6e-20 102.8 115 52.2
MELO3C035773.2 Cucumis melo HOM05D006541 ORTHO05D008471 9.8e-16 89.0 50 82.0
CsaV3_1G005410 Cucumis sativus L. HOM05D006541 ORTHO05D008471 9.8e-16 89.0 50 82.0
Cre09.g412350 Chlamydomonas reinhardtii HOM05D003341 ORTHO05D003603 2.9e-15 87.4 187 33.7
PRCOL_00002459 Prasinoderma coloniale HOM05D006541 ORTHO05D008471 8.3e-15 85.9 141 37.6
FAN09G1066 Fragaria x ananassa HOM05D007752 ORTHO05D009994 1.4e-14 85.1 160 47.5
Haze_07334 Corylus avellana HOM05D006541 ORTHO05D008471 1.8e-14 84.7 52 78.8
FAN14G0637 Fragaria x ananassa HOM05D006541 ORTHO05D008471 3.5e-13 80.5 100 56.0
vmacro17551 Vaccinium macrocarpon HOM05D006541 ORTHO05D000277 5.9e-13 79.7 50 74.0
SEGI_20393 Sequoiadendron giganteum HOM05D006541 ORTHO05D008471 4.0e-09 67.0 47 68.1


User provided reference genes

Program Settings