Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G2529 Fragaria x ananassa HOM05D004623 ORTHO05D005100 5.1e-272 940.6 533 100.0
RcHm_v2.0_Chr7g0186861 Rosa chinensis HOM05D004623 ORTHO05D005100 1.3e-219 766.5 537 79.9
FAN08G2217 Fragaria x ananassa HOM05D004623 ORTHO05D005100 6.7e-216 754.2 537 85.5
FvH4_5g10960 Fragaria vesca HOM05D004623 ORTHO05D005100 8.8e-216 753.8 538 85.7
FAN18G3535 Fragaria x ananassa HOM05D004623 ORTHO05D005100 2.8e-214 748.8 538 85.3
FAN13G2046 Fragaria x ananassa HOM05D004623 ORTHO05D005100 4.0e-208 728.4 534 83.7
MD14G1126200 Malus domestica HOM05D004623 ORTHO05D005100 2.3e-200 702.6 541 77.3
MELO3C013775.2 Cucumis melo HOM05D004623 ORTHO05D005100 3.6e-193 678.7 533 70.2
Prupe.5G129200 Prunus persica HOM05D004623 ORTHO05D005100 2.6e-191 672.5 536 76.7
ClCG10G000820 Citrullus lanatus HOM05D004623 ORTHO05D005100 2.5e-178 629.4 483 71.0
Sed0004618 Sechium edule HOM05D004623 ORTHO05D005100 7.5e-175 617.8 484 69.8
VMungo0720G2137 Vigna mungo HOM05D004623 ORTHO05D005100 9.9e-175 617.5 479 68.9
arahy.Tifrunner.gnm1.ann1.6R22RC Arachis hypogaea HOM05D004623 ORTHO05D005100 1.3e-174 617.1 475 70.9
PGR031G2083 Punica granatum HOM05D004623 ORTHO05D005100 4.9e-174 615.1 474 69.6
Rhsim02G0251800 Rhododendron simsii HOM05D004623 ORTHO05D005100 5.4e-173 611.7 497 67.0
MD06G1118100 Malus domestica HOM05D004623 ORTHO05D005100 1.2e-172 610.5 357 86.3
PSO063G4918 Papaver somniferum HOM05D004623 ORTHO05D005100 3.0e-171 605.9 483 68.5
Lalb_Chr21g0311621 Lupinus albus HOM05D004623 ORTHO05D005100 1.5e-170 603.6 470 67.7
Ca_09948_v3 Cicer arietinum L. HOM05D004623 ORTHO05D005100 9.5e-170 600.9 473 67.9
Duzib205G1161 Durio zibethinus HOM05D004623 ORTHO05D005100 2.1e-169 599.7 493 67.5
Eucgr.D01683 Eucalyptus grandis HOM05D004623 ORTHO05D005100 4.7e-169 598.6 479 67.4
Glyma.20G217500 Glycine max HOM05D004623 ORTHO05D005100 1.8e-168 596.7 447 70.7
Atru.chr9.1891 Acer truncatum HOM05D004623 ORTHO05D005100 5.8e-167 591.7 443 71.1
Medtr1g077850 Medicago truncatula HOM05D004623 ORTHO05D005100 5.8e-167 591.7 476 67.2
Psat6g053240 Pisum sativum HOM05D004623 ORTHO05D005100 6.4e-166 588.2 473 67.7
CiPaw.12G077700 Carya illinoinensis HOM05D004623 ORTHO05D005100 4.2e-165 585.5 481 67.2
TPR.G34807 Trifolium pratense HOM05D004623 ORTHO05D005100 7.1e-165 584.7 448 69.2
Cc08_g16710 Coffea canephora HOM05D004623 ORTHO05D005100 2.3e-163 579.7 439 69.9
CANSAT21G1410 Cannabis sativa HOM05D004623 ORTHO05D005100 5.6e-162 575.1 458 68.8
CsaV3_3G000890 Cucumis sativus L. HOM05D004623 ORTHO05D005100 5.6e-162 575.1 483 66.9
Haze_09171 Corylus avellana HOM05D004623 ORTHO05D005100 9.6e-162 574.3 553 65.8
PSO782G3970 Papaver somniferum HOM05D004623 ORTHO05D005100 4.8e-161 572.0 483 65.8
arahy.Tifrunner.gnm1.ann1.CHU5UJ Arachis hypogaea HOM05D004623 ORTHO05D005100 6.2e-161 571.6 475 67.2
AUR62007050 Chenopodium quinoa HOM05D004623 ORTHO05D005100 1.1e-160 570.9 482 65.1
Aa31LG9G240 Aethionema arabicum HOM05D004623 ORTHO05D005100 6.9e-160 568.2 463 65.9
Gorai.004G129800 Gossypium raimondii HOM05D004623 ORTHO05D005100 3.4e-159 565.8 513 62.8
Hma1.2p1_0456F.1_g156590 Hydrangea macrophylla HOM05D004623 ORTHO05D005100 7.6e-159 564.7 461 66.4
TWI81G0490 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 8.4e-158 561.2 543 66.1
CDE09G0653 Ceratophyllum demersum HOM05D004623 ORTHO05D005100 1.4e-157 560.5 496 61.7
GSVIVG01019647001 Vitis vinifera HOM05D004623 ORTHO05D005100 1.9e-157 560.1 437 68.6
vmacro11504 Vaccinium macrocarpon HOM05D004623 ORTHO05D005100 9.3e-157 557.8 463 65.2
Cfa011928 Carpinus fangiana HOM05D004623 ORTHO05D005100 6.0e-156 555.1 546 62.5
Phvul.L005101 Phaseolus vulgaris HOM05D004623 ORTHO05D005100 1.7e-155 553.5 466 64.2
Lj5g0020025 Lotus japonicus HOM05D004623 ORTHO05D005100 3.0e-155 552.7 416 69.5
Hund11352 Selenicereus undatus HOM05D004623 ORTHO05D005100 3.0e-155 552.7 476 63.4
Dinv12926 Davidia involucrata HOM05D004623 ORTHO05D005100 8.7e-155 551.2 458 65.3
Ciclev10019829m.g Citrus clementina HOM05D004623 ORTHO05D005100 1.1e-154 550.8 495 61.8
Glyma.10G172800 Glycine max HOM05D004623 ORTHO05D005100 1.5e-154 550.4 474 64.1
CiPaw.11G112800 Carya illinoinensis HOM05D004623 ORTHO05D005100 3.3e-154 549.3 478 62.8
Dinv16877 Davidia involucrata HOM05D004623 ORTHO05D005100 5.6e-154 548.5 444 66.4
Aqoxy7G00024 Aquilegia oxysepala HOM05D004623 ORTHO05D005100 1.3e-153 547.4 485 62.1
TWI15G0843 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 2.1e-153 546.6 471 65.8
Lj8A201G75 Lonicera japonica HOM05D004623 ORTHO05D005100 6.2e-153 545.0 407 70.3
Thecc.03G221500 Theobroma cacao HOM05D004623 ORTHO05D005100 1.2e-151 540.8 483 63.8
ATR0620G132 Amborella trichopoda HOM05D004623 ORTHO05D005100 1.5e-151 540.4 388 71.6
COL.COLO4_10792 Corchorus olitorius HOM05D004623 ORTHO05D005100 5.8e-151 538.5 479 63.0
CSS0032200 Camellia sinensis var. sinensis HOM05D004623 ORTHO05D005100 1.7e-150 537.0 487 61.4
TAR629G1871 Trochodendron aralioides HOM05D004623 ORTHO05D005100 1.7e-150 537.0 496 60.9
Nitab4.5_0004251g0030 Nicotiana tabacum HOM05D004623 ORTHO05D005100 4.9e-150 535.4 444 64.9
Cpa.g.sc175.24 Carica papaya HOM05D004623 ORTHO05D005100 1.6e-148 530.4 453 63.6
SGA_v2.0_scaffold127G33962 Striga asiatica HOM05D004623 ORTHO05D005100 1.6e-148 530.4 465 62.4
Nitab4.5_0007063g0040 Nicotiana tabacum HOM05D004623 ORTHO05D005100 2.1e-148 530.0 463 63.1
Potri.003G146200 Populus trichocarpa HOM05D004623 ORTHO05D005100 3.5e-148 529.3 542 60.9
Lj2A157G52 Lonicera japonica HOM05D004623 ORTHO05D005100 7.9e-148 528.1 452 65.0
THA.LOC104823625 Tarenaya hassleriana HOM05D004623 ORTHO05D005100 1.3e-147 527.3 475 61.9
TAR375G0778 Trochodendron aralioides HOM05D004623 ORTHO05D005100 1.8e-147 526.9 479 61.6
Solyc08g083070.3 Solanum lycopersicum HOM05D004623 ORTHO05D005100 6.7e-147 525.0 455 62.4
Migut.E00632 Erythranthe guttata HOM05D004623 ORTHO05D005100 8.7e-147 524.6 464 61.9
Sopen08g031290 Solanum pennellii HOM05D004623 ORTHO05D005100 1.1e-146 524.2 455 62.4
MSTRG.13716 Avicennia marina HOM05D004623 ORTHO05D005100 3.3e-146 522.7 476 60.3
SalBow1G2042 Salvia bowleyana HOM05D004623 ORTHO05D005100 4.3e-146 522.3 439 64.7
CAN.G567.85 Capsicum annuum HOM05D004623 ORTHO05D005100 7.4e-146 521.5 445 63.8
BcaB06g27683 Brassica carinata HOM05D004623 ORTHO05D005100 2.1e-145 520.0 465 61.1
Gohir.D08G123000 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.1e-145 520.0 481 61.5
Gohir.A08G110100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 6.2e-145 518.5 481 61.1
Zm00001eb220090 Zea mays HOM05D004623 ORTHO05D005100 6.2e-145 518.5 486 60.7
Os03g0113800 Oryza sativa ssp. japonica HOM05D004623 ORTHO05D005100 1.1e-144 517.7 474 61.0
Nn1g00375 Nelumbo nucifera HOM05D004623 ORTHO05D005100 1.4e-144 517.3 490 58.6
HanXRQChr03g0086131 Helianthus annuus HOM05D004623 ORTHO05D005100 2.4e-144 516.5 441 63.5
DCAR_006543 Daucus carota HOM05D004623 ORTHO05D005100 2.6e-143 513.1 449 61.9
Gohir.A09G188600 Gossypium hirsutum HOM05D004623 ORTHO05D005100 3.4e-143 512.7 480 59.8
AT5G41950 Arabidopsis thaliana HOM05D004623 ORTHO05D005100 1.3e-142 510.8 468 60.5
Sp7g00180 Schrenkiella parvula HOM05D004623 ORTHO05D005100 1.7e-142 510.4 465 60.4
Thhalv10027708m.g Eutrema salsugineum HOM05D004623 ORTHO05D005100 3.8e-142 509.2 469 61.0
BcaC02g08901 Brassica carinata HOM05D004623 ORTHO05D005100 3.2e-141 506.1 468 60.0
BolC4t26520H Brassica oleracea HOM05D004623 ORTHO05D005100 3.2e-141 506.1 468 60.0
Gohir.D09G183500 Gossypium hirsutum HOM05D004623 ORTHO05D005100 5.5e-141 505.4 480 59.2
Carub.0007s3343 Capsella rubella HOM05D004623 ORTHO05D005100 3.5e-140 502.7 463 60.9
CARHR212610 Cardamine hirsuta HOM05D004623 ORTHO05D005100 4.6e-140 502.3 474 59.5
EL10Ac5g12433 Beta vulgaris HOM05D004623 ORTHO05D005100 7.9e-140 501.5 480 59.0
C04p49340 Brassica napus HOM05D003273 ORTHO05D005100 1.0e-139 501.1 463 59.8
QL02p028195 Quercus lobata HOM05D004623 ORTHO05D005100 3.0e-139 499.6 390 68.7
A04p15110 Brassica napus HOM05D003273 ORTHO05D005100 1.9e-138 496.9 463 59.4
BraA04t17152Z Brassica rapa HOM05D003273 ORTHO05D005100 1.9e-138 496.9 463 59.4
AL7G47270 Arabidopsis lyrata HOM05D004623 ORTHO05D005100 4.3e-138 495.7 446 61.2
Peaxi162Scf00074g00026 Petunia axillaris HOM05D004623 ORTHO05D005100 5.7e-138 495.4 490 58.8
Gorai.006G205900 Gossypium raimondii HOM05D004623 ORTHO05D005100 7.4e-138 495.0 478 58.2
unitig_62.g23647 Utricularia gibba HOM05D004623 ORTHO05D005100 1.6e-137 493.8 469 59.5
Gohir.A02G098100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 3.7e-137 492.7 479 59.7
Sabra03G0106400 Salix brachista HOM05D004623 ORTHO05D005100 4.8e-137 492.3 512 57.8
Gohir.D03G085500 Gossypium hirsutum HOM05D004623 ORTHO05D005100 5.3e-136 488.8 479 59.3
Sc22g0004710 Simmondsia chinensis HOM05D004623 ORTHO05D005100 9.0e-136 488.0 469 58.6
Gorai.003G076800 Gossypium raimondii HOM05D004623 ORTHO05D005100 2.5e-133 479.9 496 57.3
AUR62019914 Chenopodium quinoa HOM05D004623 ORTHO05D005100 1.6e-132 477.2 476 57.6
Os10g0518300 Oryza sativa ssp. japonica HOM05D004623 ORTHO05D005100 3.0e-131 473.0 481 57.2
Lalb_Chr02g0149581 Lupinus albus HOM05D004623 ORTHO05D005100 3.3e-130 469.5 469 56.3
Zm00001eb043430 Zea mays HOM05D004623 ORTHO05D005100 5.7e-130 468.8 411 64.0
SEGI_26605 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 6.9e-128 461.8 519 51.8
Manes.01G051700 Manihot esculenta HOM05D004623 ORTHO05D005100 1.3e-126 457.6 543 55.6
Duzib068G0531 Durio zibethinus HOM05D004623 ORTHO05D005100 3.6e-124 449.5 481 55.9
Lsat_1_v5_gn_3_14141 Lactuca sativa HOM05D004623 ORTHO05D005100 1.8e-123 447.2 427 59.3
ECA246G3914 Erigeron canadensis HOM05D004623 ORTHO05D005100 6.3e-121 438.7 434 55.3
Lsat_1_v5_gn_6_82240 Lactuca sativa HOM05D004623 ORTHO05D005100 5.0e-118 429.1 460 53.3
Oeu041377.1 Olea europaea HOM05D004623 ORTHO05D005100 1.9e-117 427.2 459 53.8
Actinidia22205 Actinidia chinensis HOM05D004623 ORTHO05D005100 5.5e-117 425.6 349 66.5
HPP92_007396 Vanilla planifolia HOM05D004623 ORTHO05D005100 5.5e-117 425.6 330 66.7
Manes.02G003100 Manihot esculenta HOM05D004623 ORTHO05D005100 3.3e-114 416.4 383 62.4
ECA240G2146 Erigeron canadensis HOM05D004623 ORTHO05D005100 9.7e-114 414.8 422 54.7
TWI15G1120 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 2.0e-111 407.1 421 64.4
Mapoly0068s0096 Marchantia polymorpha HOM05D004623 ORTHO05D005100 6.1e-108 395.6 396 51.8
HanXRQChr06g0166801 Helianthus annuus HOM05D004623 ORTHO05D005100 6.7e-107 392.1 401 55.6
AagrBONN_evm.TU.Sc2ySwM_344.2453 Anthoceros agrestis HOM05D004623 ORTHO05D005100 5.2e-99 365.9 398 49.7
MBI12_g13717_MAGBIO Magnolia biondii HOM05D004623 ORTHO05D005100 1.6e-95 354.4 607 40.2
Migut.E00624 Erythranthe guttata HOM05D004623 ORTHO05D005100 5.5e-93 345.9 341 59.8
SMO134G0154 Selaginella moellendorffii HOM05D004623 ORTHO05D005100 3.6e-92 343.2 278 61.5
HanXRQChr17g0534721 Helianthus annuus HOM05D004623 ORTHO05D005100 1.4e-91 341.3 345 56.2
Pp3c2_21950 Physcomitrium patens HOM05D004623 ORTHO05D005100 8.9e-83 312.0 384 43.8
Pp3c1_15130 Physcomitrium patens HOM05D004623 ORTHO05D005100 2.6e-82 310.5 483 39.1
BolC6t37215H Brassica oleracea HOM05D004623 ORTHO05D005100 3.3e-77 293.5 259 62.9
CBR_g24226 Chara braunii HOM05D004623 ORTHO05D005100 4.3e-77 293.1 482 36.5
Oeu013386.1 Olea europaea HOM05D004623 ORTHO05D005100 4.3e-77 293.1 280 60.4
HanXRQChr05g0133491 Helianthus annuus HOM05D004623 ORTHO05D005100 6.8e-51 206.1 131 77.1
Gorai.001G213600 Gossypium raimondii HOM05D004623 ORTHO05D005100 4.9e-49 199.9 152 65.8
Gohir.A06G102600 Gossypium hirsutum HOM05D004623 ORTHO05D005100 4.8e-44 183.3 141 64.5
MCO14G177 Micromonas commoda HOM05D004623 ORTHO05D005100 6.2e-44 183.0 318 37.7
Gorai.003G053400 Gossypium raimondii HOM05D004623 ORTHO05D005100 1.8e-43 181.4 141 63.1
C06p20370 Brassica napus HOM05D004623 ORTHO05D005100 2.4e-43 181.0 175 57.1
Gohir.D05G097100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.4e-43 181.0 141 63.8
Gohir.D08G109908 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.3e-38 165.2 168 54.2
Gohir.D01G085875 Gossypium hirsutum HOM05D004623 ORTHO05D005100 5.1e-38 163.3 134 60.4
Gorai.002G111300 Gossypium raimondii HOM05D004623 ORTHO05D005100 1.1e-37 162.2 134 60.4
SEGI_12617 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 2.0e-34 151.4 95 80.0
Gohir.D07G097001 Gossypium hirsutum HOM05D004623 ORTHO05D005100 3.8e-33 147.1 128 60.2
Gohir.D03G136750 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.0e-30 139.0 171 48.0
Lsat_1_v5_gn_1_84960 Lactuca sativa HOM05D004623 ORTHO05D005100 3.3e-29 134.0 78 83.3
SEGI_10381 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 3.4e-26 124.0 106 59.4
Gohir.D04G089675 Gossypium hirsutum HOM05D004623 ORTHO05D005100 3.2e-24 117.5 76 72.4
Lsat_1_v5_gn_3_125120 Lactuca sativa HOM05D004623 ORTHO05D005100 1.2e-23 115.5 132 50.8
Cre09.g387550 Chlamydomonas reinhardtii HOM05D004623 ORTHO05D005100 2.7e-23 114.4 334 28.1
BcaC08g44571 Brassica carinata HOM05D004623 ORTHO05D005100 1.3e-20 105.5 73 69.9
TPR.G39353 Trifolium pratense HOM05D004623 ORTHO05D005100 7.6e-18 96.3 53 83.0
Lsat_1_v5_gn_7_15681 Lactuca sativa HOM05D004269 ORTHO05D007106 1.1e-16 92.4 133 44.4
Glyma.02G157002 Glycine max HOM05D000518 ORTHO05D005100 2.7e-15 87.8 55 76.4
MD08G1234800 Malus domestica HOM05D008315 ORTHO05D009452 8.7e-14 82.8 57 73.7
Actinidia15203 Actinidia chinensis HOM05D004623 ORTHO05D005100 1.6e-12 78.6 71 63.4
Actinidia19830 Actinidia chinensis HOM05D004623 ORTHO05D005100 1.4e-11 75.5 52 73.1
VMungo1383G2282 Vigna mungo HOM05D004623 ORTHO05D005100 2.0e-10 71.6 86 52.3
Prupe.4G044400 Prunus persica HOM05D007576 ORTHO05D009576 7.9e-07 59.7 141 29.8
Ca_21702_v3 Cicer arietinum L. HOM05D007576 ORTHO05D009576 1.8e-06 58.5 165 27.3
Ciclev10014397m.g Citrus clementina HOM05D007576 ORTHO05D009576 5.1e-06 57.0 139 28.1
Glyma.17G117500 Glycine max HOM05D007576 ORTHO05D009576 5.1e-06 57.0 140 28.6
Glyma.05G009500 Glycine max HOM05D007576 ORTHO05D009576 6.7e-06 56.6 140 28.6
Lalb_Chr13g0302021 Lupinus albus HOM05D007576 ORTHO05D009576 6.7e-06 56.6 140 27.9
Medtr4g113740 Medicago truncatula HOM05D007576 ORTHO05D009576 8.8e-06 56.2 140 28.6
TPR.G10703 Trifolium pratense HOM05D007576 ORTHO05D009576 8.8e-06 56.2 140 27.9


User provided reference genes

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