Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G2505 Fragaria x ananassa HOM05D003086 ORTHO05D003347 3.4e-36 154.5 77 100.0
FAN08G3604 Fragaria x ananassa HOM05D003086 ORTHO05D003347 1.9e-34 148.7 77 97.4
FAN13G3255 Fragaria x ananassa HOM05D003086 ORTHO05D003347 7.9e-33 143.3 83 91.6
FAN18G2695 Fragaria x ananassa HOM05D003086 ORTHO05D003347 1.0e-32 142.9 84 90.5
FvH4_5g11470 Fragaria vesca HOM05D003086 ORTHO05D003347 5.3e-29 130.6 84 84.5
RcHm_v2.0_Chr7g0186341 Rosa chinensis HOM05D003086 ORTHO05D003347 1.6e-22 109.0 88 72.7
Prupe.5G126200 Prunus persica HOM05D003086 ORTHO05D003347 1.3e-16 89.4 75 66.7
MD06G1113400 Malus domestica HOM05D003086 ORTHO05D003347 6.7e-16 87.0 82 63.4
CiPaw.12G080100 Carya illinoinensis HOM05D003086 ORTHO05D003347 9.7e-15 83.2 73 64.4
Manes.02G005600 Manihot esculenta HOM05D003086 ORTHO05D003347 2.2e-14 82.0 84 59.5
Potri.001G087200 Populus trichocarpa HOM05D003086 ORTHO05D003347 3.7e-14 81.3 89 59.6
TWI60G1451 Tripterygium wilfordii HOM05D003086 ORTHO05D003347 8.2e-14 80.1 74 62.2
Cpa.g.sc1802.1 Carica papaya HOM05D003086 ORTHO05D003347 1.1e-13 79.7 69 60.9
QL02p028382 Quercus lobata HOM05D003086 ORTHO05D003347 2.4e-13 78.6 81 55.6
Haze_09122 Corylus avellana HOM05D003086 ORTHO05D003347 3.1e-13 78.2 76 59.2
Sabra01G0063400 Salix brachista HOM05D003086 ORTHO05D003347 2.0e-12 75.5 88 56.8
Thhalv10026968m.g Eutrema salsugineum HOM05D003086 ORTHO05D003347 1.0e-11 73.2 67 58.2
Manes.01G053400 Manihot esculenta HOM05D003086 ORTHO05D003347 2.9e-11 71.6 83 53.0
Thecc.03G304600 Theobroma cacao HOM05D003086 ORTHO05D003347 5.0e-11 70.9 71 53.5
Gorai.004G131100 Gossypium raimondii HOM05D003086 ORTHO05D003347 8.5e-11 70.1 64 59.4
Sed0015662 Sechium edule HOM05D003086 ORTHO05D003347 8.5e-11 70.1 52 65.4
AL6G44860 Arabidopsis lyrata HOM05D003086 ORTHO05D003347 1.1e-10 69.7 66 54.5
CARHR255790 Cardamine hirsuta HOM05D003086 ORTHO05D003347 1.1e-10 69.7 69 52.2
ClCG01G001890 Citrullus lanatus HOM05D003086 ORTHO05D003347 1.9e-10 68.9 58 62.1
Thecc.03G304300 Theobroma cacao HOM05D003086 ORTHO05D003347 1.9e-10 68.9 71 53.5
AT4G10810 Arabidopsis thaliana HOM05D003086 ORTHO05D003347 4.2e-10 67.8 66 53.0
Gohir.A08G111400 Gossypium hirsutum HOM05D003086 ORTHO05D003347 4.2e-10 67.8 64 57.8
Gohir.D08G124400 Gossypium hirsutum HOM05D003086 ORTHO05D003347 4.2e-10 67.8 64 57.8
THA.LOC104813050 Tarenaya hassleriana HOM05D003086 ORTHO05D003347 4.2e-10 67.8 67 53.7
Lalb_Chr05g0223911 Lupinus albus HOM05D003086 ORTHO05D003347 5.5e-10 67.4 49 73.5
PGR042G2701 Punica granatum HOM05D003086 ORTHO05D003347 5.5e-10 67.4 83 50.6
Psat7g022720 Pisum sativum HOM05D003086 ORTHO05D003347 7.2e-10 67.0 82 50.0
MELO3C005750.2 Cucumis melo HOM05D003086 ORTHO05D003347 9.4e-10 66.6 46 73.9
Carub.0006s2958 Capsella rubella HOM05D003086 ORTHO05D003347 1.6e-09 65.9 80 47.5
COL.COLO4_10758 Corchorus olitorius HOM05D003086 ORTHO05D003347 2.7e-09 65.1 66 51.5
MD14G1134500 Malus domestica HOM05D003086 ORTHO05D003347 3.6e-09 64.7 78 51.3
Glyma.05G219700 Glycine max HOM05D003086 ORTHO05D003347 4.6e-09 64.3 46 71.7
Glyma.08G026000 Glycine max HOM05D003086 ORTHO05D003347 4.6e-09 64.3 46 71.7
CsaV3_5G002030 Cucumis sativus L. HOM05D003086 ORTHO05D003347 1.0e-08 63.2 46 69.6
BcaC09g50920 Brassica carinata HOM05D003086 ORTHO05D003347 1.4e-08 62.8 69 47.8
C01p19250 Brassica napus HOM05D003086 ORTHO05D003347 1.4e-08 62.8 69 47.8
BolC1t01850H Brassica oleracea HOM05D003086 ORTHO05D003347 1.4e-08 62.8 69 47.8
BraA01t01474Z Brassica rapa HOM05D003086 ORTHO05D003347 1.4e-08 62.8 69 47.8
BraA08t32861Z Brassica rapa HOM05D003086 ORTHO05D003347 1.4e-08 62.8 69 47.8
CiPaw.11G115700 Carya illinoinensis HOM05D003086 ORTHO05D003347 1.8e-08 62.4 47 63.8
Thhalv10015091m.g Eutrema salsugineum HOM05D003086 ORTHO05D003347 1.8e-08 62.4 63 52.4
Nn3g18930 Nelumbo nucifera HOM05D003086 ORTHO05D003347 1.8e-08 62.4 77 49.4
Lj4g0018385 Lotus japonicus HOM05D003086 ORTHO05D003347 2.3e-08 62.0 75 52.0
Atru.chr9.1962 Acer truncatum HOM05D003086 ORTHO05D003347 3.9e-08 61.2 63 55.6
Lalb_Chr09g0332101 Lupinus albus HOM05D003086 ORTHO05D003347 3.9e-08 61.2 45 68.9
Potri.003G143800 Populus trichocarpa HOM05D003086 ORTHO05D003347 3.9e-08 61.2 89 51.7
THA.LOC109116607 Tarenaya hassleriana HOM05D003086 ORTHO05D003347 5.1e-08 60.8 53 60.4
TPR.G20234 Trifolium pratense HOM05D003086 ORTHO05D003347 8.8e-08 60.1 60 48.3
Ciclev10023176m.g Citrus clementina HOM05D003086 ORTHO05D003347 1.1e-07 59.7 75 50.7
Haze_15678 Corylus avellana HOM05D003086 ORTHO05D003347 1.5e-07 59.3 68 45.6
Psat4g162600 Pisum sativum HOM05D003086 ORTHO05D003347 1.5e-07 59.3 65 46.2
SHI06941 Sapria himalayana HOM05D003472 ORTHO05D004200 1.5e-07 59.3 72 50.0
TAR375G0287 Trochodendron aralioides HOM05D003086 ORTHO05D003347 1.5e-07 59.3 75 45.3
Actinidia20253 Actinidia chinensis HOM05D003086 ORTHO05D003347 2.0e-07 58.9 73 46.6
BcaNung01108 Brassica carinata HOM05D003086 ORTHO05D003347 2.6e-07 58.5 69 44.9
DCAR_008957 Daucus carota HOM05D003086 ORTHO05D003347 2.6e-07 58.5 62 50.0
TAR629G1883 Trochodendron aralioides HOM05D003086 ORTHO05D003347 2.6e-07 58.5 75 46.7
Cfa003782 Carpinus fangiana HOM05D003086 ORTHO05D003347 3.3e-07 58.2 73 43.8
Hma1.2p1_0591F.1_g185160 Hydrangea macrophylla HOM05D003086 ORTHO05D003347 3.3e-07 58.2 79 43.0
Actinidia07974 Actinidia chinensis HOM05D003086 ORTHO05D003347 4.4e-07 57.8 67 46.3
CSS0006972 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 4.4e-07 57.8 65 46.2
Medtr8g099965 Medicago truncatula HOM05D003086 ORTHO05D003347 4.4e-07 57.8 45 62.2
Sp6g06680 Schrenkiella parvula HOM05D003086 ORTHO05D003347 4.4e-07 57.8 58 51.7
HPP92_025720 Vanilla planifolia HOM05D003086 ORTHO05D003347 4.4e-07 57.8 57 50.9
TPR.G3409 Trifolium pratense HOM05D003086 ORTHO05D003347 5.7e-07 57.4 78 48.7
CiPaw.05G227500 Carya illinoinensis HOM05D003086 ORTHO05D003347 7.4e-07 57.0 53 52.8
Thhalv10029101m.g Eutrema salsugineum HOM05D003086 ORTHO05D003347 9.7e-07 56.6 69 46.4
Phvul.002G328908 Phaseolus vulgaris HOM05D003086 ORTHO05D003347 9.7e-07 56.6 86 44.2
AT4G24026 Arabidopsis thaliana HOM05D003086 ORTHO05D003347 1.3e-06 56.2 68 47.1
BcaNung05697 Brassica carinata HOM05D003086 ORTHO05D003347 1.3e-06 56.2 68 50.0
HanXRQChr08g0225161 Helianthus annuus HOM05D003086 ORTHO05D003347 1.3e-06 56.2 62 50.0
Aa31LG9G11270 Aethionema arabicum HOM05D003086 ORTHO05D003347 1.7e-06 55.8 69 46.4
AL7G29250 Arabidopsis lyrata HOM05D003086 ORTHO05D003347 1.7e-06 55.8 69 46.4
BcaC05g27913 Brassica carinata HOM05D003086 ORTHO05D003347 1.7e-06 55.8 67 47.8
C05p39210 Brassica napus HOM05D003086 ORTHO05D003347 1.7e-06 55.8 67 47.8
BolC5t32654H Brassica oleracea HOM05D003086 ORTHO05D003347 1.7e-06 55.8 67 47.8
Ca_23518_v3 Cicer arietinum L. HOM05D003086 ORTHO05D003347 1.7e-06 55.8 62 46.8
Sed0027058 Sechium edule HOM05D003086 ORTHO05D003347 1.7e-06 55.8 39 69.2
Aqoxy5G04301 Aquilegia oxysepala HOM05D003086 ORTHO05D003347 2.2e-06 55.5 59 47.5
C09p35950 Brassica napus HOM05D003086 ORTHO05D003347 2.2e-06 55.5 78 44.9
BolC9t56428H Brassica oleracea HOM05D003086 ORTHO05D003347 2.2e-06 55.5 78 44.9
Carub.0007s1706 Capsella rubella HOM05D003086 ORTHO05D003347 2.2e-06 55.5 72 44.4
Sabra02G0139700 Salix brachista HOM05D003086 ORTHO05D003347 2.2e-06 55.5 53 54.7
Aa31LG2G1580 Aethionema arabicum HOM05D000001 ORTHO05D000003 3.7e-06 54.7 74 45.9
BcaB05g23876 Brassica carinata HOM05D003086 ORTHO05D003347 3.7e-06 54.7 66 45.5
BcaNung06471 Brassica carinata HOM05D003086 ORTHO05D003347 3.7e-06 54.7 65 49.2
C07p53320 Brassica napus HOM05D003086 ORTHO05D003347 3.7e-06 54.7 65 49.2
BolC7t45826H Brassica oleracea HOM05D003086 ORTHO05D003347 3.7e-06 54.7 65 49.2
CANSAT21G1677 Cannabis sativa HOM05D003086 ORTHO05D003347 3.7e-06 54.7 85 41.2
Ciclev10033638m.g Citrus clementina HOM05D003086 ORTHO05D003347 3.7e-06 54.7 65 50.8
Gohir.A11G098500 Gossypium hirsutum HOM05D003086 ORTHO05D003347 3.7e-06 54.7 57 47.4
Gorai.007G110300 Gossypium raimondii HOM05D003086 ORTHO05D003347 3.7e-06 54.7 57 47.4
Lsat_1_v5_gn_4_30961 Lactuca sativa HOM05D003086 ORTHO05D003347 3.7e-06 54.7 60 48.3
Medtr8g027380 Medicago truncatula HOM05D003086 ORTHO05D003347 3.7e-06 54.7 64 45.3
AT1G64584 Arabidopsis thaliana HOM05D003086 ORTHO05D003347 4.8e-06 54.3 70 44.3
ECA233G0233 Erigeron canadensis HOM05D003086 ORTHO05D003347 4.8e-06 54.3 83 41.0
CSS0010966 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 6.3e-06 53.9 58 50.0
Migut.B01892 Erythranthe guttata HOM05D003086 ORTHO05D003347 6.3e-06 53.9 58 48.3
Duzib084G0307 Durio zibethinus HOM05D003086 ORTHO05D003347 8.2e-06 53.5 59 47.5
Migut.F00191 Erythranthe guttata HOM05D003086 ORTHO05D003347 8.2e-06 53.5 70 47.1
PGR142G1468 Punica granatum HOM05D003086 ORTHO05D003347 8.2e-06 53.5 83 41.0
Rhsim07G0002900 Rhododendron simsii HOM05D003086 ORTHO05D003347 8.2e-06 53.5 62 43.5


User provided reference genes

Program Settings