Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G2492 Fragaria x ananassa HOM05D003756 ORTHO05D004304 4.5e-35 150.6 71 100.0
FvH4_5g38790 Fragaria vesca HOM05D003756 ORTHO05D004304 3.6e-32 141.0 69 95.7
FvH4_6g18660 Fragaria vesca HOM05D003756 ORTHO05D004304 3.1e-31 137.9 70 92.9
FAN14G1823 Fragaria x ananassa HOM05D003756 ORTHO05D004304 3.1e-31 137.9 70 92.9
FAN05G1127 Fragaria x ananassa HOM05D003756 ORTHO05D004304 8.9e-31 136.3 70 91.4
FAN05G3155 Fragaria x ananassa HOM05D003756 ORTHO05D004304 8.9e-31 136.3 70 91.4
FAN09G2235 Fragaria x ananassa HOM05D003756 ORTHO05D004304 8.9e-31 136.3 70 91.4
FAN18G4123 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.5e-30 135.6 72 91.7
FAN02G3109 Fragaria x ananassa HOM05D003756 ORTHO05D004304 2.0e-30 135.2 67 94.0
CANSAT80G0977 Cannabis sativa HOM05D003756 ORTHO05D004304 3.4e-30 134.4 67 91.0
MD15G1359000 Malus domestica HOM05D003756 ORTHO05D004304 4.4e-30 134.0 68 89.7
Prupe.7G110400 Prunus persica HOM05D003756 ORTHO05D004304 1.3e-29 132.5 67 91.0
Gohir.A09G139300 Gossypium hirsutum HOM05D003756 ORTHO05D004304 1.7e-29 132.1 70 90.0
Gohir.D09G135300 Gossypium hirsutum HOM05D003756 ORTHO05D004304 1.7e-29 132.1 70 90.0
Gorai.006G155200 Gossypium raimondii HOM05D003756 ORTHO05D004304 1.7e-29 132.1 70 90.0
Potri.009G149300 Populus trichocarpa HOM05D003756 ORTHO05D004304 3.7e-29 131.0 70 81.4
Prupe.1G506800 Prunus persica HOM05D003756 ORTHO05D004304 6.4e-29 130.2 67 89.6
Gohir.D01G127900 Gossypium hirsutum HOM05D003756 ORTHO05D004304 8.3e-29 129.8 67 91.0
Gorai.002G158500 Gossypium raimondii HOM05D003756 ORTHO05D004304 8.3e-29 129.8 67 91.0
RcHm_v2.0_Chr7g0240771 Rosa chinensis HOM05D003756 ORTHO05D004304 8.3e-29 129.8 70 84.3
Duzib106G1642 Durio zibethinus HOM05D003756 ORTHO05D004304 1.1e-28 129.4 67 91.0
Thecc.05G088800 Theobroma cacao HOM05D003756 ORTHO05D004304 1.4e-28 129.0 67 89.6
ClCG04G010070 Citrullus lanatus HOM05D003756 ORTHO05D004304 1.9e-28 128.6 67 88.1
ClCG10G018980 Citrullus lanatus HOM05D003756 ORTHO05D004304 1.9e-28 128.6 67 88.1
Eucgr.K02043 Eucalyptus grandis HOM05D003756 ORTHO05D004304 1.9e-28 128.6 67 86.6
CSS0028702 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 2.4e-28 128.3 68 83.8
RcHm_v2.0_Chr3g0473621 Rosa chinensis HOM05D003756 ORTHO05D004304 2.4e-28 128.3 67 88.1
MD12G1036000 Malus domestica HOM05D003756 ORTHO05D004304 3.2e-28 127.9 67 89.6
MD14G1022700 Malus domestica HOM05D003756 ORTHO05D004304 3.2e-28 127.9 67 89.6
Duzib128G1348 Durio zibethinus HOM05D003756 ORTHO05D004304 4.1e-28 127.5 67 88.1
Lalb_Chr20g0111721 Lupinus albus HOM05D003756 ORTHO05D004304 4.1e-28 127.5 66 86.4
Sed0014276 Sechium edule HOM05D003756 ORTHO05D004304 4.1e-28 127.5 67 86.6
Gohir.A01G138200 Gossypium hirsutum HOM05D003756 ORTHO05D004304 5.4e-28 127.1 67 88.1
Gohir.A01G206400 Gossypium hirsutum HOM05D003756 ORTHO05D004304 5.4e-28 127.1 67 89.6
Gorai.002G240000 Gossypium raimondii HOM05D003756 ORTHO05D004304 5.4e-28 127.1 67 89.6
Ah.15g090880 Amaranthus hybridus HOM05D003756 ORTHO05D004304 7.0e-28 126.7 67 85.1
Cpa.g.sc5.21 Carica papaya HOM05D003756 ORTHO05D004304 9.2e-28 126.3 67 85.1
Sed0019143 Sechium edule HOM05D003756 ORTHO05D004304 9.2e-28 126.3 65 87.7
Glyma.03G195700 Glycine max HOM05D003756 ORTHO05D004304 1.6e-27 125.6 65 87.7
Gohir.D01G195800 Gossypium hirsutum HOM05D003756 ORTHO05D004304 1.6e-27 125.6 67 88.1
Lj6g0015332 Lotus japonicus HOM05D003756 ORTHO05D004304 1.6e-27 125.6 67 86.6
Psat3g033400 Pisum sativum HOM05D003756 ORTHO05D004304 1.6e-27 125.6 67 86.6
Cfa016605 Carpinus fangiana HOM05D003756 ORTHO05D004304 2.0e-27 125.2 65 86.2
Haze_19608 Corylus avellana HOM05D003756 ORTHO05D004304 2.0e-27 125.2 65 86.2
HanXRQChr01g0024081 Helianthus annuus HOM05D003756 ORTHO05D004304 2.0e-27 125.2 67 83.6
MELO3C024548.2 Cucumis melo HOM05D003756 ORTHO05D004304 2.7e-27 124.8 67 85.1
Potri.004G188700 Populus trichocarpa HOM05D003756 ORTHO05D004304 2.7e-27 124.8 68 80.9
arahy.Tifrunner.gnm1.ann1.IH6TUL Arachis hypogaea HOM05D003756 ORTHO05D004304 6.0e-27 123.6 67 85.1
Glyma.13G153500 Glycine max HOM05D003756 ORTHO05D004304 6.0e-27 123.6 70 81.4
Lalb_Chr25g0288331 Lupinus albus HOM05D003756 ORTHO05D004304 6.0e-27 123.6 67 82.1
Medtr7g104570 Medicago truncatula HOM05D003756 ORTHO05D004304 6.0e-27 123.6 67 85.1
TAR636G3345 Trochodendron aralioides HOM05D003756 ORTHO05D004304 6.0e-27 123.6 68 80.9
CiPaw.10G009500 Carya illinoinensis HOM05D003756 ORTHO05D004304 7.8e-27 123.2 67 82.1
ECA248G1642 Erigeron canadensis HOM05D003756 ORTHO05D004304 7.8e-27 123.2 67 82.1
Sabra04G0129400 Salix brachista HOM05D003756 ORTHO05D004304 7.8e-27 123.2 68 80.9
TWI74G1420 Tripterygium wilfordii HOM05D003756 ORTHO05D004304 7.8e-27 123.2 67 79.1
Ca_09004_v3 Cicer arietinum L. HOM05D003756 ORTHO05D004304 1.0e-26 122.9 67 83.6
ClCG04G010050 Citrullus lanatus HOM05D003756 ORTHO05D004304 1.0e-26 122.9 67 85.1
MELO3C009472.2 Cucumis melo HOM05D003756 ORTHO05D004304 1.3e-26 122.5 67 83.6
CsaV3_3G037270 Cucumis sativus L. HOM05D003756 ORTHO05D004304 1.3e-26 122.5 67 83.6
Lsat_1_v5_gn_1_59380 Lactuca sativa HOM05D003756 ORTHO05D004304 1.3e-26 122.5 65 83.1
Manes.08G025100 Manihot esculenta HOM05D003756 ORTHO05D004304 1.3e-26 122.5 70 80.0
Peaxi162Scf00003g00522 Petunia axillaris HOM05D003756 ORTHO05D004304 1.3e-26 122.5 66 86.4
QL07p038800 Quercus lobata HOM05D003756 ORTHO05D004304 1.3e-26 122.5 65 80.0
QL07p039050 Quercus lobata HOM05D003756 ORTHO05D004304 1.3e-26 122.5 65 80.0
Nn6g34903 Nelumbo nucifera HOM05D003756 ORTHO05D004304 1.7e-26 122.1 67 82.1
CiPaw.09G013700 Carya illinoinensis HOM05D003756 ORTHO05D004304 2.3e-26 121.7 70 80.0
HanXRQChr02g0054771 Helianthus annuus HOM05D003756 ORTHO05D004304 2.3e-26 121.7 68 79.4
Oeu002376.1 Olea europaea HOM05D003756 ORTHO05D004304 2.3e-26 121.7 71 80.3
GSVIVG01033840001 Vitis vinifera HOM05D003756 ORTHO05D004304 2.3e-26 121.7 68 82.4
Lsat_1_v5_gn_6_38741 Lactuca sativa HOM05D003756 ORTHO05D004304 3.0e-26 121.3 65 83.1
HPP92_026089 Vanilla planifolia HOM05D003756 ORTHO05D004304 3.0e-26 121.3 68 80.9
CSS0017737 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 3.9e-26 120.9 66 80.3
CSS0036255 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 3.9e-26 120.9 66 80.3
Sc20g0006280 Simmondsia chinensis HOM05D003756 ORTHO05D004304 5.0e-26 120.6 67 80.6
PGR142G3329 Punica granatum HOM05D003756 ORTHO05D004304 6.6e-26 120.2 67 80.6
AUR62006180 Chenopodium quinoa HOM05D003756 ORTHO05D004304 8.6e-26 119.8 65 83.1
AUR62028527 Chenopodium quinoa HOM05D003756 ORTHO05D004304 8.6e-26 119.8 65 83.1
Nitab4.5_0000755g0180 Nicotiana tabacum HOM05D003756 ORTHO05D004304 8.6e-26 119.8 65 83.1
PGSC0003DMG400005923 Solanum tuberosum HOM05D003756 ORTHO05D004304 8.6e-26 119.8 65 83.1
Actinidia24215 Actinidia chinensis HOM05D003756 ORTHO05D004304 1.1e-25 119.4 65 81.5
Phvul.001G190200 Phaseolus vulgaris HOM05D003756 ORTHO05D004304 1.1e-25 119.4 65 81.5
HPP92_025135 Vanilla planifolia HOM05D003756 ORTHO05D004304 1.1e-25 119.4 68 80.9
Atru.chr8.1542 Acer truncatum HOM05D003756 ORTHO05D004304 1.9e-25 118.6 70 80.0
ECA233G1974 Erigeron canadensis HOM05D003756 ORTHO05D004304 1.9e-25 118.6 65 81.5
MBI17_g08353_MAGBIO Magnolia biondii HOM05D003756 ORTHO05D004304 1.9e-25 118.6 67 82.1
THA.LOC104804928 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 1.9e-25 118.6 67 82.1
MD07G1149900 Malus domestica HOM05D003756 ORTHO05D004304 2.5e-25 118.2 67 82.1
TAR623G0741 Trochodendron aralioides HOM05D003756 ORTHO05D004304 3.3e-25 117.9 67 80.6
Aqoxy2G03946 Aquilegia oxysepala HOM05D003756 ORTHO05D004304 7.3e-25 116.7 67 79.1
Atru.chr8.1539 Acer truncatum HOM05D003756 ORTHO05D004304 1.2e-24 115.9 70 77.1
Actinidia07248 Actinidia chinensis HOM05D003756 ORTHO05D004304 1.2e-24 115.9 65 78.5
Actinidia35464 Actinidia chinensis HOM05D003756 ORTHO05D004304 1.6e-24 115.5 65 78.5
Cc01_g09260 Coffea canephora HOM05D003756 ORTHO05D004304 1.6e-24 115.5 65 75.4
THA.LOC104799762 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 1.6e-24 115.5 67 80.6
CDE06G0646 Ceratophyllum demersum HOM05D003756 ORTHO05D004304 2.8e-24 114.8 67 76.1
CAN.G919.30 Capsicum annuum HOM05D003756 ORTHO05D004304 4.7e-24 114.0 61 78.7
Aa31LG5G21370 Aethionema arabicum HOM05D003756 ORTHO05D004304 8.0e-24 113.2 67 77.6
AL5G33490 Arabidopsis lyrata HOM05D003756 ORTHO05D004304 8.0e-24 113.2 67 77.6
AT3G52730 Arabidopsis thaliana HOM05D003756 ORTHO05D004304 8.0e-24 113.2 67 77.6
Carub.0005s1918 Capsella rubella HOM05D003756 ORTHO05D004304 8.0e-24 113.2 67 77.6
CAN.G1358.12 Capsicum annuum HOM05D003756 ORTHO05D004304 8.0e-24 113.2 66 80.3
CARHR162600 Cardamine hirsuta HOM05D003756 ORTHO05D004304 8.0e-24 113.2 67 77.6
THA.LOC104823490 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 8.0e-24 113.2 67 77.6
Solyc11g068400.2 Solanum lycopersicum HOM05D003756 ORTHO05D004304 1.1e-23 112.8 67 79.1
Sopen11g027120 Solanum pennellii HOM05D003756 ORTHO05D004304 1.1e-23 112.8 67 79.1
TWI53G0293 Tripterygium wilfordii HOM05D003756 ORTHO05D004304 1.1e-23 112.8 75 69.3
MD16G1126500 Malus domestica HOM05D003756 ORTHO05D004304 1.4e-23 112.5 66 80.3
TAR633G1678 Trochodendron aralioides HOM05D003756 ORTHO05D004304 1.4e-23 112.5 98 59.2
Ah.08g210600 Amaranthus hybridus HOM05D001616 ORTHO05D003701 1.8e-23 112.1 91 61.5
Dinv42555 Davidia involucrata HOM05D003756 ORTHO05D004304 1.8e-23 112.1 68 76.5
Zm00001eb093400 Zea mays HOM05D003756 ORTHO05D004304 3.1e-23 111.3 63 74.6
CAN.G2235.1 Capsicum annuum HOM05D003756 ORTHO05D004304 4.0e-23 110.9 65 78.5
arahy.Tifrunner.gnm1.ann1.N59HKK Arachis hypogaea HOM05D003756 ORTHO05D004304 5.2e-23 110.5 89 62.9
Thhalv10010889m.g Eutrema salsugineum HOM05D003756 ORTHO05D004304 6.8e-23 110.2 63 79.4
Nitab4.5_0001216g0110 Nicotiana tabacum HOM05D003756 ORTHO05D004304 1.2e-22 109.4 84 65.5
unitig_747.g21944 Utricularia gibba HOM05D003756 ORTHO05D004304 1.5e-22 109.0 67 74.6
Zm00001eb196190 Zea mays HOM05D003756 ORTHO05D004304 1.5e-22 109.0 63 74.6
Glyma.19G194915 Glycine max HOM05D003756 ORTHO05D004304 2.0e-22 108.6 94 60.6
BcaB02g07820 Brassica carinata HOM05D003756 ORTHO05D004304 2.6e-22 108.2 63 77.8
CAN.G1039.16 Capsicum annuum HOM05D003756 ORTHO05D004304 2.6e-22 108.2 67 76.1
Os05g0400400 Oryza sativa ssp. japonica HOM05D003756 ORTHO05D004304 2.6e-22 108.2 61 73.8
BcaB01g00346 Brassica carinata HOM05D003756 ORTHO05D004304 3.4e-22 107.8 62 79.0
BcaB02g08557 Brassica carinata HOM05D003756 ORTHO05D004304 3.4e-22 107.8 63 77.8
BcaC02g09226 Brassica carinata HOM05D003756 ORTHO05D004304 3.4e-22 107.8 63 77.8
BcaC07g39638 Brassica carinata HOM05D003756 ORTHO05D004304 3.4e-22 107.8 62 79.0
A09p45820 Brassica napus HOM05D003756 ORTHO05D004304 3.4e-22 107.8 62 79.0
C04p40240 Brassica napus HOM05D003756 ORTHO05D004304 3.4e-22 107.8 63 77.8
C08p28010 Brassica napus HOM05D003756 ORTHO05D004304 3.4e-22 107.8 62 79.0
BolC4t25600H Brassica oleracea HOM05D003756 ORTHO05D004304 3.4e-22 107.8 63 77.8
BolC8t50413H Brassica oleracea HOM05D003756 ORTHO05D004304 3.4e-22 107.8 62 79.0
BraA09t40043Z Brassica rapa HOM05D003756 ORTHO05D004304 3.4e-22 107.8 62 79.0
Sp5g09600 Schrenkiella parvula HOM05D003756 ORTHO05D004304 3.4e-22 107.8 63 77.8
A04p06750 Brassica napus HOM05D003756 ORTHO05D004304 4.4e-22 107.5 63 76.2
HanXRQChr14g0451601 Helianthus annuus HOM05D003756 ORTHO05D004304 2.2e-21 105.1 70 70.0
Migut.D02449 Erythranthe guttata HOM05D003756 ORTHO05D004304 3.7e-21 104.4 67 70.1
SalBow5G5426 Salvia bowleyana HOM05D003756 ORTHO05D004304 3.7e-21 104.4 67 70.1
CAN.G28765.1 Capsicum annuum HOM05D003756 ORTHO05D004304 3.2e-20 101.3 67 74.6
COL.COLO4_29737 Corchorus olitorius HOM05D003756 ORTHO05D004304 3.2e-20 101.3 60 80.0
Nitab4.5_0000132g0030 Nicotiana tabacum HOM05D003756 ORTHO05D004304 3.2e-20 101.3 81 66.7
PSO384G4395 Papaver somniferum HOM05D003756 ORTHO05D004304 9.2e-20 99.8 69 66.7
SEGI_29748 Sequoiadendron giganteum HOM05D003756 ORTHO05D004304 9.2e-20 99.8 58 74.1
ECA238G2045 Erigeron canadensis HOM05D003756 ORTHO05D004304 1.2e-19 99.4 65 67.7
Duzib093G1183 Durio zibethinus HOM05D003756 ORTHO05D004304 1.6e-19 99.0 50 90.0
PSO339G6416 Papaver somniferum HOM05D003756 ORTHO05D004304 1.6e-19 99.0 69 66.7
Nitab4.5_0006996g0050 Nicotiana tabacum HOM05D003756 ORTHO05D004304 3.5e-19 97.8 50 88.0
Oeu035551.2 Olea europaea HOM05D003756 ORTHO05D004304 4.6e-19 97.4 53 81.1
Rhsim13G0111400 Rhododendron simsii HOM05D003756 ORTHO05D004304 4.6e-19 97.4 89 52.8
Sabra09G0117900 Salix brachista HOM05D003756 ORTHO05D004304 7.8e-19 96.7 53 79.2
EL10Ac7g16918 Beta vulgaris HOM05D003756 ORTHO05D004304 1.0e-18 96.3 51 80.4
CsaV3_6G040700 Cucumis sativus L. HOM05D003756 ORTHO05D004304 2.3e-18 95.1 50 84.0
Rhsim01G0205100 Rhododendron simsii HOM05D003756 ORTHO05D004304 2.3e-18 95.1 116 45.7
Mapoly0074s0034 Marchantia polymorpha HOM05D003756 ORTHO05D004304 3.0e-18 94.7 63 63.5
Hund19934 Selenicereus undatus HOM05D003756 ORTHO05D004304 3.0e-18 94.7 50 84.0
TPR.G19525 Trifolium pratense HOM05D003756 ORTHO05D004304 5.1e-18 94.0 50 82.0
Actinidia37081 Actinidia chinensis HOM05D003756 ORTHO05D004304 1.5e-17 92.4 50 82.0
Hma1.2p1_0578F.1_g182500 Hydrangea macrophylla HOM05D003756 ORTHO05D004304 1.9e-17 92.0 53 79.2
Sc02g0000240 Simmondsia chinensis HOM05D003756 ORTHO05D004304 4.3e-17 90.9 50 80.0
Ciclev10013189m.g Citrus clementina HOM05D003756 ORTHO05D004304 5.6e-17 90.5 53 75.5
PGSC0003DMG400026342 Solanum tuberosum HOM05D003756 ORTHO05D004304 9.5e-17 89.7 59 69.5
ATR0796G241 Amborella trichopoda HOM05D003756 ORTHO05D004304 1.6e-16 89.0 48 79.2
Dinv29482 Davidia involucrata HOM05D003756 ORTHO05D004304 2.8e-16 88.2 50 76.0
FAN13G0109 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.4e-15 85.9 51 74.5
Pp3c7_2560 Physcomitrium patens HOM05D003756 ORTHO05D004304 8.9e-15 83.2 62 53.2
Sp4g18470 Schrenkiella parvula HOM05D003756 ORTHO05D004304 8.9e-15 83.2 50 74.0
Hma1.2p1_0084F.1_g043780 Hydrangea macrophylla HOM05D003756 ORTHO05D004304 2.6e-14 81.6 53 67.9
Nitab4.5_0000963g0100 Nicotiana tabacum HOM05D003756 ORTHO05D004304 2.6e-14 81.6 50 72.0
Pp3c11_23610 Physcomitrium patens HOM05D003756 ORTHO05D004304 3.4e-14 81.3 67 47.8
BraA04t16378Z Brassica rapa HOM05D003756 ORTHO05D004304 5.8e-14 80.5 49 71.4
MELO3C032936.2 Cucumis melo HOM05D003756 ORTHO05D004304 9.9e-14 79.7 40 87.5
SalBow6G3312 Salvia bowleyana HOM05D003756 ORTHO05D004304 1.3e-13 79.3 50 66.0
SEGI_32530 Sequoiadendron giganteum HOM05D003756 ORTHO05D004304 1.3e-13 79.3 46 73.9
CBR_g21065 Chara braunii HOM05D003756 ORTHO05D004304 2.2e-13 78.6 61 57.4
FAN13G3094 Fragaria x ananassa HOM05D003756 ORTHO05D004304 2.2e-13 78.6 46 80.4
PSO478G0414 Papaver somniferum HOM05D003756 ORTHO05D004304 8.3e-13 76.6 58 58.6
FAN04G1204 Fragaria x ananassa HOM05D003756 ORTHO05D004304 2.4e-12 75.1 51 68.6
FAN04G2029 Fragaria x ananassa HOM05D003756 ORTHO05D004304 2.4e-12 75.1 51 68.6
FAN21G3678 Fragaria x ananassa HOM05D002333 ORTHO05D004304 3.5e-11 71.2 41 82.9
RcHm_v2.0_Chr7g0240761 Rosa chinensis HOM05D003756 ORTHO05D004304 6.0e-11 70.5 37 83.8
Dinv33579 Davidia involucrata HOM05D003756 ORTHO05D004304 1.0e-10 69.7 38 76.3
Nn2g14157 Nelumbo nucifera HOM05D003756 ORTHO05D004304 3.3e-09 64.7 34 79.4
MCO16G664 Micromonas commoda HOM05D003756 ORTHO05D004304 1.4e-07 59.3 51 52.9
PRCOL_00006894 Prasinoderma coloniale HOM05D003756 ORTHO05D004304 4.0e-07 57.8 54 46.3
Aa31LG10G7740 Aethionema arabicum HOM05D003756 ORTHO05D004304 7.6e-06 53.5 30 76.7


User provided reference genes

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