Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G2433 Fragaria x ananassa HOM05D004439 ORTHO05D005670 1.4e-281 972.2 469 100.0
FAN08G0613 Fragaria x ananassa HOM05D004439 ORTHO05D005670 2.3e-276 954.9 470 98.5
FAN18G4375 Fragaria x ananassa HOM05D004439 ORTHO05D005670 1.1e-273 946.0 474 97.0
FAN18G2355 Fragaria x ananassa HOM05D004439 ORTHO05D005670 8.4e-271 936.4 475 96.2
FAN13G1146 Fragaria x ananassa HOM05D004439 ORTHO05D005670 2.7e-261 904.8 470 94.7
FvH4_5g04460 Fragaria vesca HOM05D004439 ORTHO05D005670 6.1e-253 877.1 461 93.5
RcHm_v2.0_Chr7g0195041 Rosa chinensis HOM05D004439 ORTHO05D005670 4.8e-250 867.5 478 90.2
Prupe.5G117700 Prunus persica HOM05D004439 ORTHO05D005670 2.8e-213 745.3 457 79.2
MD06G1105400 Malus domestica HOM05D004439 ORTHO05D005670 8.6e-207 723.8 456 77.9
Nn2g14269 Nelumbo nucifera HOM05D004439 ORTHO05D005670 2.1e-205 719.2 455 76.3
CANSAT21G0267 Cannabis sativa HOM05D004439 ORTHO05D005670 6.2e-205 717.6 459 75.2
MBI07_g27257_MAGBIO Magnolia biondii HOM05D004439 ORTHO05D005670 6.2e-205 717.6 451 75.4
GSVIVG01019518001 Vitis vinifera HOM05D004439 ORTHO05D005670 1.8e-204 716.1 452 75.7
Dinv38840 Davidia involucrata HOM05D004439 ORTHO05D005670 8.9e-204 713.8 458 74.5
Duzib205G1996 Durio zibethinus HOM05D004439 ORTHO05D005670 7.5e-203 710.7 450 74.7
TAR629G1063 Trochodendron aralioides HOM05D004439 ORTHO05D005670 7.5e-203 710.7 454 74.9
Cfa023584 Carpinus fangiana HOM05D004439 ORTHO05D005670 9.8e-203 710.3 476 72.5
CiPaw.11G122200 Carya illinoinensis HOM05D004439 ORTHO05D005670 1.7e-202 709.5 452 75.4
CSS0017274 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 2.9e-202 708.8 454 74.0
CSS0021285 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 2.9e-202 708.8 454 74.0
vmacro13901 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 8.3e-202 707.2 454 73.6
Atru.chr9.2010 Acer truncatum HOM05D004439 ORTHO05D005670 3.2e-201 705.3 447 75.6
Manes.11G128600 Manihot esculenta HOM05D004439 ORTHO05D005670 1.0e-199 700.3 451 74.9
Duzib084G1213 Durio zibethinus HOM05D004439 ORTHO05D005670 1.7e-199 699.5 469 72.7
Gohir.D12G237200 Gossypium hirsutum HOM05D004439 ORTHO05D005670 2.3e-199 699.1 449 74.4
COL.COLO4_10686 Corchorus olitorius HOM05D004439 ORTHO05D005670 3.9e-199 698.4 463 73.4
Thecc.03G296500 Theobroma cacao HOM05D004439 ORTHO05D005670 5.1e-199 698.0 450 74.4
Potri.003G104700 Populus trichocarpa HOM05D004439 ORTHO05D005670 6.6e-199 697.6 449 75.3
Ciclev10020115m.g Citrus clementina HOM05D004439 ORTHO05D005670 1.5e-198 696.4 450 74.2
TWI81G0104 Tripterygium wilfordii HOM05D004439 ORTHO05D005670 3.3e-198 695.3 448 73.9
Gorai.008G253800 Gossypium raimondii HOM05D004439 ORTHO05D005670 6.2e-197 691.0 449 73.5
Sopen08g030490 Solanum pennellii HOM05D004439 ORTHO05D005670 3.1e-196 688.7 456 71.1
Peaxi162Scf00074g01028 Petunia axillaris HOM05D004439 ORTHO05D005670 4.0e-196 688.3 444 73.4
Solyc08g082200.3 Solanum lycopersicum HOM05D004439 ORTHO05D005670 1.5e-195 686.4 456 70.8
EL10Ac5g12905 Beta vulgaris HOM05D004439 ORTHO05D005670 1.3e-194 683.3 458 70.5
QL02p030851 Quercus lobata HOM05D004439 ORTHO05D005670 2.2e-194 682.6 452 72.6
CsaV3_5G039570 Cucumis sativus L. HOM05D004439 ORTHO05D005670 4.1e-193 678.3 457 70.5
vmacro05785 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 4.1e-193 678.3 447 72.5
Eucgr.E00854 Eucalyptus grandis HOM05D004439 ORTHO05D005670 7.1e-193 677.6 457 70.2
Glyma.02G286600 Glycine max HOM05D004439 ORTHO05D005670 3.9e-191 671.8 446 73.1
Lj1g0018659 Lotus japonicus HOM05D004439 ORTHO05D005670 3.9e-191 671.8 441 73.7
Medtr3g062490 Medicago truncatula HOM05D004439 ORTHO05D005670 8.6e-191 670.6 441 73.7
CAN.G532.113 Capsicum annuum HOM05D004439 ORTHO05D005670 1.9e-190 669.5 456 70.0
Cc08_g15970 Coffea canephora HOM05D004439 ORTHO05D005670 4.3e-190 668.3 454 70.3
Ca_15083_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 1.2e-189 666.8 441 73.0
Sed0005226 Sechium edule HOM05D004439 ORTHO05D005670 2.1e-189 666.0 451 70.1
arahy.Tifrunner.gnm1.ann1.X9M6Z3 Arachis hypogaea HOM05D004439 ORTHO05D005670 1.8e-188 662.9 450 69.8
arahy.Tifrunner.gnm1.ann1.FA9VAL Arachis hypogaea HOM05D004439 ORTHO05D005670 5.2e-188 661.4 450 69.6
Psat5g147560 Pisum sativum HOM05D004439 ORTHO05D005670 5.2e-188 661.4 441 72.6
Phvul.009G207100 Phaseolus vulgaris HOM05D004439 ORTHO05D005670 1.2e-187 660.2 445 71.5
arahy.Tifrunner.gnm1.ann1.URL0E3 Arachis hypogaea HOM05D004439 ORTHO05D005670 2.6e-187 659.1 450 69.3
VMungo0647G0731 Vigna mungo HOM05D004439 ORTHO05D005670 2.6e-187 659.1 445 71.7
Aqoxy5G04196 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 3.4e-187 658.7 459 70.4
Nitab4.5_0001231g0030 Nicotiana tabacum HOM05D004439 ORTHO05D005670 4.4e-187 658.3 444 70.3
Rhsim07G0082800 Rhododendron simsii HOM05D004439 ORTHO05D005670 7.6e-187 657.5 457 69.1
Sc01g0010250 Simmondsia chinensis HOM05D004439 ORTHO05D005670 9.9e-187 657.1 452 67.9
MSTRG.1809 Avicennia marina HOM05D004439 ORTHO05D005670 2.2e-186 656.0 449 68.6
Hund11394 Selenicereus undatus HOM05D004439 ORTHO05D005670 2.9e-186 655.6 471 68.2
DCAR_006321 Daucus carota HOM05D004439 ORTHO05D005670 4.2e-185 651.7 471 68.4
Lj8C209T4 Lonicera japonica HOM05D004439 ORTHO05D005670 9.2e-185 650.6 385 79.0
Cpa.g.sc79.44 Carica papaya HOM05D004439 ORTHO05D005670 1.6e-184 649.8 441 71.9
Ca_15072_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 4.6e-184 648.3 467 68.3
ATR0320G020 Amborella trichopoda HOM05D004439 ORTHO05D005670 1.3e-183 646.7 458 68.3
SalBow1G1193 Salvia bowleyana HOM05D004439 ORTHO05D005670 1.3e-183 646.7 443 68.8
Lsat_1_v5_gn_6_12240 Lactuca sativa HOM05D004439 ORTHO05D005670 1.7e-183 646.4 442 69.9
Lalb_Chr16g0376971 Lupinus albus HOM05D004439 ORTHO05D005670 3.0e-183 645.6 454 68.1
Migut.A00663 Erythranthe guttata HOM05D004439 ORTHO05D005670 3.9e-183 645.2 449 67.7
arahy.Tifrunner.gnm1.ann1.B833UN Arachis hypogaea HOM05D004439 ORTHO05D005670 9.6e-182 640.6 465 66.5
unitig_92.g28124 Utricularia gibba HOM05D004439 ORTHO05D005670 1.8e-180 636.3 465 65.2
AUR62019828 Chenopodium quinoa HOM05D004439 ORTHO05D005670 1.7e-178 629.8 477 64.6
HanXRQChr06g0184201 Helianthus annuus HOM05D004439 ORTHO05D005670 6.4e-178 627.9 457 67.6
HanXRQChr05g0138501 Helianthus annuus HOM05D004439 ORTHO05D005670 1.9e-177 626.3 457 66.7
ECA233G4302 Erigeron canadensis HOM05D004439 ORTHO05D005670 7.1e-177 624.4 441 69.2
Aqoxy1G01152 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 1.7e-175 619.8 423 70.4
SGA_v2.0_scaffold305G47954 Striga asiatica HOM05D004439 ORTHO05D005670 2.3e-175 619.4 489 62.4
Actinidia27332 Actinidia chinensis HOM05D004439 ORTHO05D005670 1.5e-174 616.7 459 67.5
THA.LOC104809335 Tarenaya hassleriana HOM05D004439 ORTHO05D005670 3.6e-173 612.1 459 64.7
AUR62010830 Chenopodium quinoa HOM05D004439 ORTHO05D005670 6.2e-173 611.3 458 64.4
Sabra03G0071700 Salix brachista HOM05D004439 ORTHO05D005670 1.4e-172 610.1 489 65.0
Ah.12g052480 Amaranthus hybridus HOM05D004439 ORTHO05D005670 5.3e-172 608.2 462 63.9
CDE02G4298 Ceratophyllum demersum HOM05D004439 ORTHO05D005670 2.6e-171 605.9 455 64.4
Sp7g00230 Schrenkiella parvula HOM05D004439 ORTHO05D005670 1.3e-170 603.6 446 64.6
Carub.0007s3348 Capsella rubella HOM05D004439 ORTHO05D005670 3.8e-170 602.1 441 63.7
AL7G47340 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 5.4e-169 598.2 442 64.5
Thhalv10027750m.g Eutrema salsugineum HOM05D004439 ORTHO05D005670 1.6e-168 596.7 446 64.3
HPP92_001766 Vanilla planifolia HOM05D004439 ORTHO05D005670 1.6e-168 596.7 462 62.6
CARHR212680 Cardamine hirsuta HOM05D004439 ORTHO05D005670 2.1e-168 596.3 470 61.3
AT5G41880 Arabidopsis thaliana HOM05D004439 ORTHO05D005670 2.7e-168 595.9 442 64.0
PSO384G1647 Papaver somniferum HOM05D004439 ORTHO05D005670 1.0e-167 594.0 457 65.0
Lj8A194T41 Lonicera japonica HOM05D004439 ORTHO05D005670 1.8e-167 593.2 373 75.3
BcaC02g08908 Brassica carinata HOM05D004439 ORTHO05D005670 8.7e-167 590.9 443 63.7
Oeu063530.1 Olea europaea HOM05D004439 ORTHO05D005670 1.1e-166 590.5 365 74.5
BcaB02g07872 Brassica carinata HOM05D004439 ORTHO05D005670 2.5e-166 589.3 468 61.5
A04p15000 Brassica napus HOM05D004439 ORTHO05D005670 2.5e-166 589.3 445 63.8
BraA04t17145Z Brassica rapa HOM05D004439 ORTHO05D005670 5.6e-166 588.2 445 63.6
Gohir.A12G236000 Gossypium hirsutum HOM05D004439 ORTHO05D005670 5.6e-166 588.2 345 79.4
C04p49290 Brassica napus HOM05D004439 ORTHO05D005670 7.4e-166 587.8 445 63.6
BolC4t26514H Brassica oleracea HOM05D004439 ORTHO05D005670 7.4e-166 587.8 445 63.6
PSO339G0633 Papaver somniferum HOM05D004439 ORTHO05D005670 3.7e-165 585.5 459 64.5
C06p20300 Brassica napus HOM05D004439 ORTHO05D005670 8.1e-165 584.3 452 62.4
HPP92_001588 Vanilla planifolia HOM05D004439 ORTHO05D005670 1.3e-162 577.0 456 61.4
ClCG08G001530 Citrullus lanatus HOM05D004439 ORTHO05D005670 6.4e-162 574.7 510 57.8
Mapoly0061s0010 Marchantia polymorpha HOM05D004439 ORTHO05D005670 6.4e-162 574.7 451 59.9
Nitab4.5_0008661g0010 Nicotiana tabacum HOM05D004439 ORTHO05D005670 1.9e-161 573.2 408 67.6
BcaB06g27677 Brassica carinata HOM05D004439 ORTHO05D005670 7.9e-160 567.8 458 60.5
DCAR_029884 Daucus carota HOM05D004439 ORTHO05D005670 2.8e-157 559.3 395 71.1
BcaC08g44563 Brassica carinata HOM05D004439 ORTHO05D005670 1.9e-153 546.6 418 63.2
A07p20990 Brassica napus HOM05D004439 ORTHO05D005670 1.2e-152 543.9 475 57.7
Aa31LG9G280 Aethionema arabicum HOM05D004439 ORTHO05D005670 7.9e-152 541.2 423 62.9
Rhsim09G0008900 Rhododendron simsii HOM05D004439 ORTHO05D005670 4.1e-148 528.9 468 58.5
Pp3c9_1070 Physcomitrium patens HOM05D004439 ORTHO05D005670 2.6e-147 526.2 450 54.2
CBR_g30932 Chara braunii HOM05D004439 ORTHO05D005670 4.5e-147 525.4 441 54.9
Haze_08623 Corylus avellana HOM05D004439 ORTHO05D005670 5.9e-147 525.0 441 60.5
AagrBONN_evm.TU.Sc2ySwM_117.2781 Anthoceros agrestis HOM05D004439 ORTHO05D005670 2.2e-146 523.1 464 55.8
CBR_g51004 Chara braunii HOM05D004439 ORTHO05D005670 4.2e-145 518.8 446 54.3
arahy.Tifrunner.gnm1.ann1.4X43I0 Arachis hypogaea HOM05D004439 ORTHO05D005670 1.1e-140 504.2 328 72.3
BcaNung06856 Brassica carinata HOM05D004439 ORTHO05D005670 1.4e-127 460.7 488 52.3
TPR.G13893 Trifolium pratense HOM05D004439 ORTHO05D005670 8.2e-125 451.4 438 54.3
Glyma.14G028200 Glycine max HOM05D004439 ORTHO05D005670 5.0e-122 442.2 305 72.1
MD14G1127500 Malus domestica HOM05D004439 ORTHO05D005670 6.3e-117 425.2 273 76.6
SMO361G0316 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 7.0e-116 421.8 356 58.1
SHI03128 Sapria himalayana HOM05D004439 ORTHO05D005670 2.0e-115 420.2 458 51.1
SMO361G0219 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 2.0e-115 420.2 356 56.5
RcHm_v2.0_Chr6g0245381 Rosa chinensis HOM05D004439 ORTHO05D005670 7.7e-115 418.3 205 94.6
Zm00001eb346380 Zea mays HOM05D004439 ORTHO05D005670 1.3e-114 417.5 305 67.5
Lj2A169G40 Lonicera japonica HOM05D004439 ORTHO05D005670 2.3e-111 406.8 319 62.7
CSS0041217 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 2.0e-110 403.7 458 51.3
arahy.Tifrunner.gnm1.ann1.JNH9P6 Arachis hypogaea HOM05D004439 ORTHO05D005670 8.6e-106 388.3 431 50.8
Cre07.g312350 Chlamydomonas reinhardtii HOM05D004439 ORTHO05D005670 8.6e-106 388.3 390 46.2
RcHm_v2.0_Chr6g0245391 Rosa chinensis HOM05D004439 ORTHO05D005670 8.6e-106 388.3 247 83.4
RcHm_v2.0_Chr5g0068871 Rosa chinensis HOM05D004439 ORTHO05D005670 3.4e-102 376.3 288 68.8
Cfa025390 Carpinus fangiana HOM05D004439 ORTHO05D005670 2.4e-92 343.6 421 42.3
PRCOL_00003494 Prasinoderma coloniale HOM05D004439 ORTHO05D005670 3.4e-86 323.2 435 39.3
TPR.G191 Trifolium pratense HOM05D004439 ORTHO05D005670 1.2e-75 288.1 175 78.9
MELO3C027184.2 Cucumis melo HOM05D004439 ORTHO05D005670 1.8e-55 221.1 119 82.4
PSO063G0793 Papaver somniferum HOM05D004439 ORTHO05D005670 8.4e-53 212.2 195 55.4
SEGI_14966 Sequoiadendron giganteum HOM05D004439 ORTHO05D005670 2.3e-50 204.1 201 51.2
TPR.G9934 Trifolium pratense HOM05D004439 ORTHO05D005670 3.9e-50 203.4 245 50.6
MELO3C031246.2 Cucumis melo HOM05D004439 ORTHO05D005670 1.2e-43 181.8 155 58.7
AL3G52130 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 5.3e-39 166.4 262 42.7
AL1G55640 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 6.9e-39 166.0 260 43.1
PGSC0003DMG400012290 Solanum tuberosum HOM05D004439 ORTHO05D005670 1.1e-36 158.7 231 40.3
TPR.G3794 Trifolium pratense HOM05D004439 ORTHO05D005670 3.2e-36 157.1 94 78.7
MD14G1127600 Malus domestica HOM05D004439 ORTHO05D005670 5.5e-36 156.4 124 64.5
TPR.G9939 Trifolium pratense HOM05D004439 ORTHO05D005670 3.0e-34 150.6 193 45.6
Os05g0358200 Oryza sativa ssp. japonica HOM05D004439 ORTHO05D005670 1.2e-30 138.7 85 74.1
AL2G23180 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 2.3e-26 124.4 260 36.9
MD06G1072700 Malus domestica HOM05D004439 ORTHO05D005670 1.5e-22 111.7 62 80.6
TPR.G22107 Trifolium pratense HOM05D004439 ORTHO05D005670 7.7e-22 109.4 70 74.3
AL1G44430 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 4.2e-20 103.6 106 52.8
Lj2A169G39 Lonicera japonica HOM05D004439 ORTHO05D005670 7.9e-19 99.4 92 53.3
SEGI_35904 Sequoiadendron giganteum HOM05D004439 ORTHO05D000007 1.8e-15 88.2 66 62.1
Actinidia27323 Actinidia chinensis HOM05D004439 ORTHO05D005670 9.4e-12 75.9 79 53.2
Actinidia22721 Actinidia chinensis HOM05D004439 ORTHO05D057326 1.7e-08 65.1 66 57.6
Actinidia27324 Actinidia chinensis HOM05D004439 ORTHO05D005670 1.8e-07 61.6 36 77.8


User provided reference genes

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