Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G2432 Fragaria x ananassa HOM05D004796 ORTHO05D016811 8.0e-49 196.8 103 100.0
FvH4_1g18610 Fragaria vesca HOM05D004796 ORTHO05D006527 1.7e-43 179.1 99 93.9
FAN23G2833 Fragaria x ananassa HOM05D004796 ORTHO05D006527 1.7e-43 179.1 99 93.9
FAN26G2906 Fragaria x ananassa HOM05D004796 ORTHO05D006527 1.7e-43 179.1 99 93.9
FAN28G1552 Fragaria x ananassa HOM05D004796 ORTHO05D006527 1.7e-43 179.1 99 93.9
AL8G43440 Arabidopsis lyrata HOM05D004796 ORTHO05D006527 3.9e-43 177.9 99 92.9
AT5G65720 Arabidopsis thaliana HOM05D004796 ORTHO05D006527 3.9e-43 177.9 99 92.9
arahy.Tifrunner.gnm1.ann1.P6WLKW Arachis hypogaea HOM05D004796 ORTHO05D006527 5.0e-43 177.6 99 92.9
arahy.Tifrunner.gnm1.ann1.R82CC3 Arachis hypogaea HOM05D004796 ORTHO05D006527 5.0e-43 177.6 99 92.9
CARHR279720 Cardamine hirsuta HOM05D004796 ORTHO05D006527 5.0e-43 177.6 99 92.9
RcHm_v2.0_Chr2g0109391 Rosa chinensis HOM05D004796 ORTHO05D006527 5.0e-43 177.6 99 92.9
Duzib147G0087 Durio zibethinus HOM05D004796 ORTHO05D006527 6.6e-43 177.2 99 92.9
Gohir.A05G255700 Gossypium hirsutum HOM05D004796 ORTHO05D006527 6.6e-43 177.2 99 92.9
Gohir.A12G081500 Gossypium hirsutum HOM05D004796 ORTHO05D006527 6.6e-43 177.2 99 92.9
Gohir.D05G257400 Gossypium hirsutum HOM05D004796 ORTHO05D006527 6.6e-43 177.2 99 92.9
Gohir.D12G078300 Gossypium hirsutum HOM05D004796 ORTHO05D006527 6.6e-43 177.2 99 92.9
Gorai.009G268800 Gossypium raimondii HOM05D004796 ORTHO05D006527 6.6e-43 177.2 99 92.9
DCAR_010778 Daucus carota HOM05D004796 ORTHO05D006527 8.6e-43 176.8 99 92.9
BcaB04g20026 Brassica carinata HOM05D004796 ORTHO05D006527 1.1e-42 176.4 99 91.9
A09p09140 Brassica napus HOM05D004796 ORTHO05D006527 1.1e-42 176.4 99 91.9
BraA09t36565Z Brassica rapa HOM05D004796 ORTHO05D006527 1.1e-42 176.4 99 91.9
Sp2g28820 Schrenkiella parvula HOM05D004796 ORTHO05D006527 1.1e-42 176.4 99 91.9
Thhalv10004176m.g Eutrema salsugineum HOM05D004796 ORTHO05D006527 1.5e-42 176.0 99 90.9
Thecc.01G079500 Theobroma cacao HOM05D004796 ORTHO05D006527 1.5e-42 176.0 99 91.9
Carub.0008s2662 Capsella rubella HOM05D004796 ORTHO05D006527 1.9e-42 175.6 99 91.9
MD15G1303800 Malus domestica HOM05D004796 ORTHO05D006527 1.9e-42 175.6 99 91.9
BcaC04g23250 Brassica carinata HOM05D004796 ORTHO05D006527 2.5e-42 175.3 99 90.9
BolC9t53963H Brassica oleracea HOM05D004796 ORTHO05D006527 2.5e-42 175.3 99 90.9
Duzib187G1710 Durio zibethinus HOM05D004796 ORTHO05D006527 2.5e-42 175.3 99 91.9
Hma1.2p1_0424F.1_g150270 Hydrangea macrophylla HOM05D004796 ORTHO05D006527 2.5e-42 175.3 99 90.9
TWI63G0151 Tripterygium wilfordii HOM05D004796 ORTHO05D006527 2.5e-42 175.3 99 91.9
Phvul.002G008200 Phaseolus vulgaris HOM05D004796 ORTHO05D006527 3.3e-42 174.9 99 91.9
VMungo1215G0536 Vigna mungo HOM05D004796 ORTHO05D006527 3.3e-42 174.9 99 91.9
Aa31LG1G16340 Aethionema arabicum HOM05D004796 ORTHO05D006527 4.3e-42 174.5 99 89.9
C09p10650 Brassica napus HOM05D004796 ORTHO05D006527 4.3e-42 174.5 99 90.9
ClCG01G017940 Citrullus lanatus HOM05D004796 ORTHO05D006527 5.6e-42 174.1 99 90.9
Oeu014312.1 Olea europaea HOM05D004796 ORTHO05D006527 5.6e-42 174.1 99 90.9
Potri.007G000600 Populus trichocarpa HOM05D004796 ORTHO05D006527 5.6e-42 174.1 99 89.9
QL06p038221 Quercus lobata HOM05D004796 ORTHO05D006527 5.6e-42 174.1 99 91.9
Sabra07G0000600 Salix brachista HOM05D004796 ORTHO05D006527 5.6e-42 174.1 99 89.9
Sed0020912 Sechium edule HOM05D004796 ORTHO05D006527 5.6e-42 174.1 99 90.9
Psat2g172800 Pisum sativum HOM05D004796 ORTHO05D006527 7.3e-42 173.7 99 90.9
Sabra08G0002600 Salix brachista HOM05D004796 ORTHO05D006527 7.3e-42 173.7 99 90.9
TPR.G28859 Trifolium pratense HOM05D004796 ORTHO05D006527 7.3e-42 173.7 99 90.9
Cfa006794 Carpinus fangiana HOM05D004796 ORTHO05D006527 9.5e-42 173.3 99 90.9
CiPaw.07G039300 Carya illinoinensis HOM05D004796 ORTHO05D006527 9.5e-42 173.3 99 90.9
Ciclev10025572m.g Citrus clementina HOM05D004796 ORTHO05D006527 9.5e-42 173.3 99 89.9
COL.COLO4_11645 Corchorus olitorius HOM05D004796 ORTHO05D006527 9.5e-42 173.3 99 89.9
MELO3C007668.2 Cucumis melo HOM05D004796 ORTHO05D006527 9.5e-42 173.3 99 90.9
Glyma.01G197100 Glycine max HOM05D004796 ORTHO05D006527 9.5e-42 173.3 99 90.9
Glyma.11G044600 Glycine max HOM05D004796 ORTHO05D006527 9.5e-42 173.3 99 90.9
HanXRQChr14g0447651 Helianthus annuus HOM05D004796 ORTHO05D006527 9.5e-42 173.3 99 89.9
PSO063G7095 Papaver somniferum HOM05D004796 ORTHO05D006527 9.5e-42 173.3 99 90.9
PSO782G2535 Papaver somniferum HOM05D004796 ORTHO05D006527 9.5e-42 173.3 99 90.9
PGR004G2229 Punica granatum HOM05D004796 ORTHO05D006527 9.5e-42 173.3 99 90.9
THA.LOC104800063 Tarenaya hassleriana HOM05D004796 ORTHO05D016811 9.5e-42 173.3 99 90.9
Lj2C425T5 Lonicera japonica HOM05D004796 ORTHO05D006527 1.2e-41 172.9 99 91.9
ATR1120G045 Amborella trichopoda HOM05D004796 ORTHO05D006527 1.6e-41 172.6 99 89.9
Aqoxy5G00233 Aquilegia oxysepala HOM05D004796 ORTHO05D006527 1.6e-41 172.6 99 90.9
Ca_24663_v3 Cicer arietinum L. HOM05D004796 ORTHO05D006527 1.6e-41 172.6 99 90.9
ECA234G3987 Erigeron canadensis HOM05D004796 ORTHO05D006527 1.6e-41 172.6 99 90.9
Hma1.2p1_0477F.1_g160960 Hydrangea macrophylla HOM05D004796 ORTHO05D006527 1.6e-41 172.6 99 89.9
Hma1.2p1_1953F.1_g308840 Hydrangea macrophylla HOM05D004796 ORTHO05D006527 1.6e-41 172.6 99 89.9
Nn5g30704 Nelumbo nucifera HOM05D004796 ORTHO05D006527 1.6e-41 172.6 99 89.9
Aqoxy6G02400 Aquilegia oxysepala HOM05D004796 ORTHO05D006527 2.1e-41 172.2 99 89.9
CSS0039666 Camellia sinensis var. sinensis HOM05D004796 ORTHO05D006527 2.1e-41 172.2 99 90.9
CSS0047287 Camellia sinensis var. sinensis HOM05D004796 ORTHO05D006527 2.1e-41 172.2 99 90.9
CANSAT01G0390 Cannabis sativa HOM05D004796 ORTHO05D006527 2.1e-41 172.2 99 90.9
Haze_03962 Corylus avellana HOM05D004796 ORTHO05D006527 2.1e-41 172.2 99 89.9
Lj2g0010705 Lotus japonicus HOM05D004796 ORTHO05D006527 2.1e-41 172.2 99 89.9
Peaxi162Scf00096g01526 Petunia axillaris HOM05D004796 ORTHO05D006527 2.1e-41 172.2 99 89.9
HPP92_019516 Vanilla planifolia HOM05D004796 ORTHO05D006527 2.1e-41 172.2 99 89.9
CAN.G529.24 Capsicum annuum HOM05D004796 ORTHO05D006527 2.8e-41 171.8 99 88.9
Dinv26978 Davidia involucrata HOM05D004796 ORTHO05D016811 2.8e-41 171.8 99 90.9
Medtr5g014820 Medicago truncatula HOM05D004796 ORTHO05D006527 2.8e-41 171.8 99 88.9
PSO170G1369 Papaver somniferum HOM05D004796 ORTHO05D006527 2.8e-41 171.8 99 89.9
PSO210G2597 Papaver somniferum HOM05D004796 ORTHO05D006527 2.8e-41 171.8 99 89.9
PGSC0003DMG400030629 Solanum tuberosum HOM05D004796 ORTHO05D006527 2.8e-41 171.8 99 89.9
Eucgr.I00651 Eucalyptus grandis HOM05D004796 ORTHO05D006527 3.6e-41 171.4 99 88.9
MBI11_g39360_MAGBIO Magnolia biondii HOM05D004796 ORTHO05D006527 3.6e-41 171.4 99 88.9
Nn4g24745 Nelumbo nucifera HOM05D004796 ORTHO05D006527 3.6e-41 171.4 99 88.9
THA.LOC104798404 Tarenaya hassleriana HOM05D004796 ORTHO05D006527 3.6e-41 171.4 99 89.9
TAR628G0926 Trochodendron aralioides HOM05D004796 ORTHO05D006527 3.6e-41 171.4 99 87.9
MSTRG.23646 Avicennia marina HOM05D004796 ORTHO05D006527 4.7e-41 171.0 99 88.9
Cc07_g07590 Coffea canephora HOM05D004796 ORTHO05D006527 4.7e-41 171.0 99 88.9
Nitab4.5_0000396g0100 Nicotiana tabacum HOM05D004796 ORTHO05D006527 4.7e-41 171.0 99 88.9
Nitab4.5_0006325g0030 Nicotiana tabacum HOM05D004796 ORTHO05D006527 4.7e-41 171.0 99 88.9
SGA_v2.0_scaffold121G33084 Striga asiatica HOM05D004796 ORTHO05D006527 4.7e-41 171.0 99 88.9
Atru.chr3.1085 Acer truncatum HOM05D004796 ORTHO05D006527 6.2e-41 170.6 99 87.9
Prupe.6G213300 Prunus persica HOM05D004796 ORTHO05D006527 6.2e-41 170.6 99 88.9
Solyc02g091900.4 Solanum lycopersicum HOM05D004796 ORTHO05D006527 6.2e-41 170.6 99 88.9
Sopen02g036470 Solanum pennellii HOM05D004796 ORTHO05D006527 6.2e-41 170.6 99 88.9
CAN.G1061.4 Capsicum annuum HOM05D004796 ORTHO05D006527 8.0e-41 170.2 99 88.9
Peaxi162Scf00854g00110 Petunia axillaris HOM05D004796 ORTHO05D006527 8.0e-41 170.2 99 88.9
Sc07g0000270 Simmondsia chinensis HOM05D004796 ORTHO05D006527 8.0e-41 170.2 99 87.9
Manes.12G119000 Manihot esculenta HOM05D004796 ORTHO05D006527 1.1e-40 169.9 99 87.9
Cpa.g.sc129.49 Carica papaya HOM05D004796 ORTHO05D006527 1.4e-40 169.5 99 87.9
SGA_v2.0_scaffold269G46256 Striga asiatica HOM05D004796 ORTHO05D006527 1.4e-40 169.5 99 87.9
HanXRQChr14g0461401 Helianthus annuus HOM05D004796 ORTHO05D006527 2.3e-40 168.7 99 84.8
SEGI_09827 Sequoiadendron giganteum HOM05D004796 ORTHO05D006527 2.3e-40 168.7 99 88.9
Actinidia36405 Actinidia chinensis HOM05D004796 ORTHO05D006527 3.1e-40 168.3 100 89.0
Lalb_Chr09g0323791 Lupinus albus HOM05D004796 ORTHO05D006527 3.1e-40 168.3 99 87.9
Lalb_Chr16g0379061 Lupinus albus HOM05D004796 ORTHO05D006527 3.1e-40 168.3 99 87.9
SalBow3G1292 Salvia bowleyana HOM05D004796 ORTHO05D006527 3.1e-40 168.3 99 85.9
SalBow3G2368 Salvia bowleyana HOM05D004796 ORTHO05D006527 3.1e-40 168.3 99 85.9
SalBow3G3135 Salvia bowleyana HOM05D004796 ORTHO05D006527 3.1e-40 168.3 99 85.9
CBR_g17075 Chara braunii HOM05D004796 ORTHO05D006527 4.0e-40 167.9 99 85.9
CBR_g17082 Chara braunii HOM05D004796 ORTHO05D006527 4.0e-40 167.9 99 85.9
Os09g0338400 Oryza sativa ssp. japonica HOM05D004796 ORTHO05D006527 4.0e-40 167.9 99 85.9
Pp3c2_20850 Physcomitrium patens HOM05D004796 ORTHO05D006527 8.9e-40 166.8 99 85.9
Ah.03g139580 Amaranthus hybridus HOM05D004796 ORTHO05D006527 1.2e-39 166.4 99 84.8
Lsat_1_v5_gn_2_81541 Lactuca sativa HOM05D004796 ORTHO05D006527 1.2e-39 166.4 95 91.6
Migut.H00312 Erythranthe guttata HOM05D004796 ORTHO05D006527 1.5e-39 166.0 99 85.9
SMO172G0132 Selaginella moellendorffii HOM05D004796 ORTHO05D006527 2.6e-39 165.2 99 85.9
Zm00001eb310290 Zea mays HOM05D004796 ORTHO05D006527 3.4e-39 164.9 99 83.8
AUR62007967 Chenopodium quinoa HOM05D004796 ORTHO05D006527 4.4e-39 164.5 99 83.8
CDE01G0270 Ceratophyllum demersum HOM05D004796 ORTHO05D006527 7.5e-39 163.7 102 79.4
CDE02G1131 Ceratophyllum demersum HOM05D004796 ORTHO05D006527 9.8e-39 163.3 99 81.8
MCO07G690 Micromonas commoda HOM05D004796 ORTHO05D006527 9.8e-39 163.3 99 81.8
Mapoly0184s0007 Marchantia polymorpha HOM05D004796 ORTHO05D006527 1.7e-38 162.5 99 83.8
Pp3c1_20380 Physcomitrium patens HOM05D004796 ORTHO05D006527 1.7e-38 162.5 99 83.8
CsaV3_6G044470 Cucumis sativus L. HOM05D004796 ORTHO05D006527 2.9e-38 161.8 94 89.4
ECA240G3001 Erigeron canadensis HOM05D004796 ORTHO05D006527 3.7e-38 161.4 94 89.4
Aa31LG11G11240 Aethionema arabicum HOM05D004796 ORTHO05D006527 3.2e-37 158.3 99 78.8
FvH4_4g11530 Fragaria vesca HOM05D004796 ORTHO05D016811 7.0e-37 157.1 85 97.6
Gorai.008G087200 Gossypium raimondii HOM05D004796 ORTHO05D006527 1.6e-36 156.0 87 94.3
GSVIVG01003606001 Vitis vinifera HOM05D004796 ORTHO05D006527 2.7e-36 155.2 89 91.0
Dinv23067 Davidia involucrata HOM05D004796 ORTHO05D006527 3.5e-36 154.8 89 89.9
FvH4_3g39110 Fragaria vesca HOM05D004796 ORTHO05D016811 3.5e-36 154.8 87 92.0
GSVIVG01008311001 Vitis vinifera HOM05D004796 ORTHO05D006527 4.6e-36 154.5 89 91.0
Cre02.g146250 Chlamydomonas reinhardtii HOM05D004796 ORTHO05D006527 6.0e-36 154.1 99 75.8
FAN11G3064 Fragaria x ananassa HOM05D004796 ORTHO05D016811 8.6e-35 150.2 83 95.2
PRCOL_00005106 Prasinoderma coloniale HOM05D004796 ORTHO05D006527 1.1e-34 149.8 99 73.7
Haze_27134 Corylus avellana HOM05D004796 ORTHO05D006527 1.1e-32 143.3 99 70.7
EL10Ac6g14948 Beta vulgaris HOM05D004796 ORTHO05D006527 1.7e-30 136.0 84 84.5
AagrBONN_evm.TU.Sc2ySwM_228.3102 Anthoceros agrestis HOM05D004796 ORTHO05D006527 2.4e-29 132.1 77 84.4
HPP92_019568 Vanilla planifolia HOM05D004796 ORTHO05D016811 4.1e-29 131.3 83 81.9
Cfa026265 Carpinus fangiana HOM05D004796 ORTHO05D006527 5.4e-29 131.0 99 65.7
TAR381G1547 Trochodendron aralioides HOM05D004796 ORTHO05D006527 8.9e-24 113.6 60 95.0
CAN.G541.23 Capsicum annuum HOM05D004796 ORTHO05D006527 5.1e-19 97.8 84 66.7
BcaC01g02817 Brassica carinata HOM05D004796 ORTHO05D016811 1.3e-14 83.2 55 81.8
C03p59950 Brassica napus HOM05D004796 ORTHO05D016811 7.8e-12 73.9 43 83.7
BolC3t18259H Brassica oleracea HOM05D004796 ORTHO05D016811 7.8e-12 73.9 43 83.7
CAN.G212.10 Capsicum annuum HOM05D000007 ORTHO05D000039 3.4e-07 58.5 54 59.3


User provided reference genes

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