Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G2358 Fragaria x ananassa HOM05D005079 ORTHO05D006362 0.0e+00 1465.3 714 100.0
FAN18G1282 Fragaria x ananassa HOM05D005079 ORTHO05D006362 0.0e+00 1423.3 714 96.5
FvH4_5g18820 Fragaria vesca HOM05D005079 ORTHO05D006362 0.0e+00 1417.1 714 96.4
FAN08G1452 Fragaria x ananassa HOM05D005079 ORTHO05D006362 0.0e+00 1357.0 730 91.9
RcHm_v2.0_Chr7g0203171 Rosa chinensis HOM05D005079 ORTHO05D006362 0.0e+00 1337.0 714 90.8
Prupe.5G069000 Prunus persica HOM05D005079 ORTHO05D006362 0.0e+00 1180.2 706 80.9
MD04G1063800 Malus domestica HOM05D005079 ORTHO05D006362 0.0e+00 1173.3 707 79.1
QL12p012230 Quercus lobata HOM05D005079 ORTHO05D006362 9.7e-303 1043.1 731 71.0
CiPaw.11G153800 Carya illinoinensis HOM05D005079 ORTHO05D006362 8.5e-299 1030.0 728 68.8
GSVIVG01001320001 Vitis vinifera HOM05D005079 ORTHO05D006362 2.3e-288 995.3 739 65.9
TWI81G0601 Tripterygium wilfordii HOM05D005079 ORTHO05D006362 1.7e-283 979.2 719 67.0
CANSAT21G1873 Cannabis sativa HOM05D005079 ORTHO05D006362 9.5e-282 973.4 712 66.2
Ciclev10023597m.g Citrus clementina HOM05D005079 ORTHO05D006362 2.8e-281 971.8 706 67.1
TAR629G2205 Trochodendron aralioides HOM05D005079 ORTHO05D006362 1.4e-280 969.5 716 64.8
Potri.003G076500 Populus trichocarpa HOM05D005079 ORTHO05D006362 5.2e-280 967.6 733 64.5
Nn1g01009 Nelumbo nucifera HOM05D005079 ORTHO05D006362 7.5e-279 963.8 719 65.9
Gorai.003G171100 Gossypium raimondii HOM05D005079 ORTHO05D006362 9.8e-279 963.4 709 64.9
Gohir.A03G008400 Gossypium hirsutum HOM05D005079 ORTHO05D006362 2.2e-278 962.2 709 64.9
Rhsim02G0165500 Rhododendron simsii HOM05D005079 ORTHO05D006362 6.4e-278 960.7 696 65.7
Cpa.g.sc29.152 Carica papaya HOM05D005079 ORTHO05D006362 5.4e-277 957.6 711 66.7
COL.COLO4_37183 Corchorus olitorius HOM05D005079 ORTHO05D006362 5.4e-277 957.6 691 65.4
Lalb_Chr16g0386651 Lupinus albus HOM05D005079 ORTHO05D006362 5.4e-277 957.6 721 64.4
MELO3C005534.2 Cucumis melo HOM05D005079 ORTHO05D006362 2.3e-275 952.2 703 65.6
Duzib205G0133 Durio zibethinus HOM05D005079 ORTHO05D006362 1.1e-274 949.9 703 66.0
Gohir.D03G162500 Gossypium hirsutum HOM05D005079 ORTHO05D006362 1.9e-274 949.1 709 64.6
Haze_07920 Corylus avellana HOM05D005079 ORTHO05D006362 5.6e-274 947.6 701 65.5
Sed0023601 Sechium edule HOM05D005079 ORTHO05D006362 5.6e-274 947.6 692 65.6
Cfa012713 Carpinus fangiana HOM05D005079 ORTHO05D006362 7.3e-274 947.2 701 65.2
vmacro00317 Vaccinium macrocarpon HOM05D005079 ORTHO05D006362 9.5e-274 946.8 717 64.2
CsaV3_5G004210 Cucumis sativus L. HOM05D005079 ORTHO05D006362 3.6e-273 944.9 720 63.8
Aqoxy7G00758 Aquilegia oxysepala HOM05D005079 ORTHO05D006362 1.8e-272 942.6 695 65.6
Thecc.03G252100 Theobroma cacao HOM05D005079 ORTHO05D006362 2.6e-271 938.7 709 64.7
Lj4g0012374 Lotus japonicus HOM05D005079 ORTHO05D006362 3.4e-271 938.3 736 63.5
Hma1.2p1_1172F.1_g263540 Hydrangea macrophylla HOM05D005079 ORTHO05D006362 5.8e-271 937.6 701 64.5
Ca_21961_v3 Cicer arietinum L. HOM05D005079 ORTHO05D006362 7.5e-271 937.2 690 65.4
Medtr4g100980 Medicago truncatula HOM05D005079 ORTHO05D006362 1.3e-270 936.4 686 65.6
Actinidia14431 Actinidia chinensis HOM05D005079 ORTHO05D006362 2.2e-270 935.6 697 66.0
TPR.G37701 Trifolium pratense HOM05D005079 ORTHO05D006362 2.9e-270 935.3 711 64.7
Glyma.05G059000 Glycine max HOM05D005079 ORTHO05D006362 1.9e-269 932.6 702 64.7
CSS0023122 Camellia sinensis var. sinensis HOM05D005079 ORTHO05D006362 5.4e-269 931.0 734 63.6
Psat4g071960 Pisum sativum HOM05D005079 ORTHO05D006362 5.4e-269 931.0 696 64.2
Sabra03G0047100 Salix brachista HOM05D005079 ORTHO05D006362 1.2e-268 929.9 698 64.2
Eucgr.D02075 Eucalyptus grandis HOM05D005079 ORTHO05D006362 1.2e-265 919.8 711 62.7
HanXRQChr17g0549661 Helianthus annuus HOM05D005079 ORTHO05D006362 1.6e-265 919.5 707 62.5
Hma1.2p1_1786F.1_g302370 Hydrangea macrophylla HOM05D005079 ORTHO05D006362 3.7e-262 908.3 789 57.8
Sc01g0008470 Simmondsia chinensis HOM05D005079 ORTHO05D006362 1.9e-261 906.0 699 62.1
PSO017G3550 Papaver somniferum HOM05D005079 ORTHO05D006362 1.6e-260 902.9 748 59.0
DCAR_008489 Daucus carota HOM05D005079 ORTHO05D006362 7.8e-260 900.6 742 59.4
Atru.chr9.1320 Acer truncatum HOM05D005079 ORTHO05D006362 3.0e-259 898.7 630 68.6
Cc08_g12490 Coffea canephora HOM05D005079 ORTHO05D006362 8.6e-259 897.1 715 61.0
MBI04_g09493_MAGBIO Magnolia biondii HOM05D005079 ORTHO05D006362 6.8e-256 887.5 732 60.5
SalBow6G6450 Salvia bowleyana HOM05D005079 ORTHO05D006362 8.9e-256 887.1 698 60.7
ECA232G1687 Erigeron canadensis HOM05D005079 ORTHO05D006362 1.5e-255 886.3 698 62.2
Phvul.006G006200 Phaseolus vulgaris HOM05D005079 ORTHO05D006362 1.3e-254 883.2 684 64.0
PGR031G3122 Punica granatum HOM05D005079 ORTHO05D006362 2.4e-253 879.0 714 59.5
VMungo0540G1603 Vigna mungo HOM05D005079 ORTHO05D006362 2.4e-253 879.0 684 63.3
Aa31LG2G12700 Aethionema arabicum HOM05D005079 ORTHO05D006362 2.7e-252 875.5 723 59.3
MSTRG.25528 Avicennia marina HOM05D005079 ORTHO05D006362 2.7e-252 875.5 732 58.3
BcaC09g50374 Brassica carinata HOM05D005079 ORTHO05D006362 7.8e-252 874.0 694 61.7
C01p26130 Brassica napus HOM05D005079 ORTHO05D006362 1.7e-251 872.8 694 61.4
Migut.A00986 Erythranthe guttata HOM05D005079 ORTHO05D006362 1.7e-251 872.8 700 59.9
BolC1t02557H Brassica oleracea HOM05D005079 ORTHO05D006362 3.0e-251 872.1 694 61.4
BcaNung00170 Brassica carinata HOM05D005079 ORTHO05D006362 4.3e-250 868.2 696 60.5
A01p20660 Brassica napus HOM05D005079 ORTHO05D006362 4.7e-249 864.8 694 60.5
BraA01t02000Z Brassica rapa HOM05D005079 ORTHO05D006362 8.1e-249 864.0 694 60.4
ClCG01G004030 Citrullus lanatus HOM05D005079 ORTHO05D006362 8.1e-249 864.0 720 59.6
CARHR223060 Cardamine hirsuta HOM05D005079 ORTHO05D006362 5.3e-248 861.3 705 60.7
Sp7g15190 Schrenkiella parvula HOM05D005079 ORTHO05D006362 9.0e-248 860.5 726 59.4
Sopen06g020790 Solanum pennellii HOM05D005079 ORTHO05D006362 1.5e-247 859.8 706 58.8
Nitab4.5_0000618g0020 Nicotiana tabacum HOM05D005079 ORTHO05D006362 5.8e-247 857.8 708 58.5
CAN.G1037.9 Capsicum annuum HOM05D005079 ORTHO05D006362 7.6e-247 857.4 706 58.4
Dinv39143 Davidia involucrata HOM05D005079 ORTHO05D006362 9.9e-247 857.1 589 68.1
Solyc06g060670.4 Solanum lycopersicum HOM05D005079 ORTHO05D006362 2.2e-246 855.9 724 57.7
Carub.0007s2483 Capsella rubella HOM05D005079 ORTHO05D006362 6.4e-246 854.4 702 60.1
Manes.01G080200 Manihot esculenta HOM05D005079 ORTHO05D006362 6.4e-246 854.4 718 59.5
Hund11595 Selenicereus undatus HOM05D005079 ORTHO05D006362 3.2e-245 852.0 740 56.9
AL7G38200 Arabidopsis lyrata HOM05D005079 ORTHO05D006362 4.2e-245 851.7 707 60.4
AT4G16570 Arabidopsis thaliana HOM05D005079 ORTHO05D006362 7.1e-245 850.9 701 60.3
THA.LOC104815493 Tarenaya hassleriana HOM05D005079 ORTHO05D006362 9.3e-245 850.5 704 59.7
AUR62042789 Chenopodium quinoa HOM05D005079 ORTHO05D006362 2.1e-244 849.4 699 57.8
Zm00001eb379320 Zea mays HOM05D005079 ORTHO05D006362 1.0e-243 847.0 710 57.9
ATR0317G049 Amborella trichopoda HOM05D005079 ORTHO05D006362 2.5e-242 842.4 696 58.3
Thhalv10024535m.g Eutrema salsugineum HOM05D005079 ORTHO05D006362 3.6e-241 838.6 723 58.5
Os06g0105500 Oryza sativa ssp. japonica HOM05D005079 ORTHO05D006362 1.1e-240 837.0 699 57.8
Hma1.2p1_1172F.1_g263550 Hydrangea macrophylla HOM05D005079 ORTHO05D006362 9.0e-240 833.9 598 65.1
EL10Ac5g13073 Beta vulgaris HOM05D005079 ORTHO05D006362 5.8e-239 831.2 694 57.5
Lj8C262G4 Lonicera japonica HOM05D005079 ORTHO05D006362 1.7e-238 829.7 642 63.2
SGA_v2.0_scaffold120G32882 Striga asiatica HOM05D005079 ORTHO05D006362 4.6e-236 821.6 721 56.7
AUR62007514 Chenopodium quinoa HOM05D005079 ORTHO05D006362 5.1e-211 738.4 698 53.3
Ah.12g056870 Amaranthus hybridus HOM05D005079 ORTHO05D006362 7.4e-210 734.6 721 52.3
Peaxi162Scf02065g00020 Petunia axillaris HOM05D005079 ORTHO05D006362 3.8e-206 722.2 635 57.0
Nitab4.5_0008754g0010 Nicotiana tabacum HOM05D005079 ORTHO05D006362 1.0e-203 714.1 771 49.4
unitig_744.g24463 Utricularia gibba HOM05D005079 ORTHO05D006362 2.6e-199 699.5 723 50.3
FAN13G2148 Fragaria x ananassa HOM05D005079 ORTHO05D006362 5.0e-198 695.3 691 57.6
Migut.A00942 Erythranthe guttata HOM05D005079 ORTHO05D006362 1.1e-194 684.1 516 59.3
HPP92_008921 Vanilla planifolia HOM05D005079 ORTHO05D006362 3.1e-176 622.9 515 56.7
Pp3c6_22100 Physcomitrium patens HOM05D005079 ORTHO05D006362 3.0e-171 606.3 708 43.6
AagrBONN_evm.TU.Sc2ySwM_344.1170 Anthoceros agrestis HOM05D005079 ORTHO05D006362 2.8e-164 583.2 759 41.0
SMO365G0062 Selaginella moellendorffii HOM05D005079 ORTHO05D006362 5.0e-158 562.4 682 44.7
CSS0009127 Camellia sinensis var. sinensis HOM05D005079 ORTHO05D006362 3.4e-154 549.7 718 46.2
Lsat_1_v5_gn_5_188000 Lactuca sativa HOM05D005079 ORTHO05D006362 5.1e-150 535.8 473 58.6
AUR62044148 Chenopodium quinoa HOM05D005079 ORTHO05D006362 4.1e-144 516.2 615 46.2
Oeu020426.1 Olea europaea HOM05D005079 ORTHO05D006362 4.6e-143 512.7 410 62.2
SMO014G0029 Selaginella moellendorffii HOM05D005079 ORTHO05D006362 1.5e-141 507.7 680 42.6
Migut.N00546 Erythranthe guttata HOM05D005079 ORTHO05D006362 1.2e-138 498.0 413 59.8
SMO176G0009 Selaginella moellendorffii HOM05D005079 ORTHO05D006362 1.7e-137 494.2 684 42.3
SMO304G0004 Selaginella moellendorffii HOM05D005079 ORTHO05D006362 5.8e-130 469.2 640 42.3
SMO304G0051 Selaginella moellendorffii HOM05D005079 ORTHO05D006362 1.3e-121 441.4 591 41.3
SMO304G0113 Selaginella moellendorffii HOM05D013654 ORTHO05D006362 1.2e-114 418.3 578 40.8
SMO014G0007 Selaginella moellendorffii HOM05D005079 ORTHO05D006362 1.2e-106 391.7 687 37.4
CBR_g41210 Chara braunii HOM05D005079 ORTHO05D006362 7.2e-104 382.5 686 36.6
PGSC0003DMG400013813 Solanum tuberosum HOM05D005079 ORTHO05D006362 1.1e-101 375.2 285 60.7
HPP92_028199 Vanilla planifolia HOM05D005079 ORTHO05D006362 1.5e-101 374.8 459 45.3
CDE04G1017 Ceratophyllum demersum HOM05D005079 ORTHO05D006362 2.3e-70 271.2 428 35.3
Mapoly0021s0157 Marchantia polymorpha HOM05D005079 ORTHO05D006362 1.2e-69 268.9 321 48.3
Mapoly0021s0158 Marchantia polymorpha HOM05D005079 ORTHO05D006362 3.5e-66 257.3 251 47.4
MBI09_g47605_MAGBIO Magnolia biondii HOM05D005079 ORTHO05D006362 7.7e-66 256.1 186 63.4
Hma1.2p1_1786F.1_g302380 Hydrangea macrophylla HOM05D005079 ORTHO05D006362 6.5e-65 253.1 187 62.6
Glyma.17G141300 Glycine max HOM05D005079 ORTHO05D006362 5.4e-59 233.4 148 66.2
SEGI_13987 Sequoiadendron giganteum HOM05D005079 ORTHO05D006362 1.2e-55 222.2 203 47.8
Migut.N00545 Erythranthe guttata HOM05D005079 ORTHO05D006362 8.0e-55 219.5 190 53.2
AL7G38250 Arabidopsis lyrata HOM05D005079 ORTHO05D006362 1.6e-42 178.7 160 65.0
RcHm_v2.0_Chr3g0497351 Rosa chinensis HOM05D005079 ORTHO05D006362 6.8e-38 163.3 96 81.2
CDE04G3241 Ceratophyllum demersum HOM05D005079 ORTHO05D006362 3.4e-37 161.0 201 51.2
Dinv39142 Davidia involucrata HOM05D005079 ORTHO05D006362 1.0e-25 122.9 94 72.3
C01p11340 Brassica napus HOM05D005079 ORTHO05D006362 3.9e-25 120.9 93 69.9
BolC1t01102H Brassica oleracea HOM05D005079 ORTHO05D006362 3.9e-25 120.9 93 69.9
BolC1t01100H Brassica oleracea HOM05D005079 ORTHO05D006362 2.1e-23 115.2 97 64.9
Lj4g0004414 Lotus japonicus HOM05D005079 ORTHO05D006362 1.1e-22 112.8 110 50.9
SEGI_21709 Sequoiadendron giganteum HOM05D005079 ORTHO05D006362 3.4e-21 107.8 81 58.0
PRCOL_00002472 Prasinoderma coloniale HOM05D005079 ORTHO05D006362 2.7e-18 98.2 334 26.9
PRCOL_00004414 Prasinoderma coloniale HOM05D005079 ORTHO05D034446 1.1e-16 92.8 380 24.5
Cre02.g141626 Chlamydomonas reinhardtii HOM05D005079 ORTHO05D006362 1.5e-16 92.4 348 25.6
MCO07G501 Micromonas commoda HOM05D005079 ORTHO05D006362 2.5e-16 91.7 345 29.6
MCO05G104 Micromonas commoda HOM05D005079 ORTHO05D006362 2.1e-15 88.6 261 29.9
MCO11G565 Micromonas commoda HOM05D005079 ORTHO05D034446 4.8e-15 87.4 328 25.9
AL7G38220 Arabidopsis lyrata HOM05D005079 ORTHO05D006362 4.0e-14 84.3 74 63.5
SHI11315 Sapria himalayana HOM05D005079 ORTHO05D006362 5.8e-13 80.5 123 43.9
HPP92_008920 Vanilla planifolia HOM05D005079 ORTHO05D006362 9.9e-13 79.7 155 38.1
CDE04G0837 Ceratophyllum demersum HOM05D005079 ORTHO05D006362 2.9e-12 78.2 109 45.0
PRCOL_00004569 Prasinoderma coloniale HOM05D005079 ORTHO05D006362 6.4e-12 77.0 168 32.1
HPP92_028200 Vanilla planifolia HOM05D005079 ORTHO05D006362 4.6e-10 70.9 83 49.4
MCO03G234 Micromonas commoda HOM05D000639 ORTHO05D006731 3.9e-09 67.8 297 26.9
MBI17_g38828_MAGBIO Magnolia biondii HOM05D005079 ORTHO05D000022 6.7e-09 67.0 49 61.2
A03p58960 Brassica napus HOM05D000639 ORTHO05D003485 5.6e-08 63.9 373 22.8
A01p08530 Brassica napus HOM05D000639 ORTHO05D003485 7.4e-08 63.5 335 22.7
BraA01t00802Z Brassica rapa HOM05D000639 ORTHO05D003485 7.4e-08 63.5 335 22.7
BcaC09g51739 Brassica carinata HOM05D000639 ORTHO05D003485 9.6e-08 63.2 335 22.4
C01p09960 Brassica napus HOM05D000639 ORTHO05D003485 9.6e-08 63.2 335 22.7
C07p56940 Brassica napus HOM05D000639 ORTHO05D003485 9.6e-08 63.2 335 22.4
BolC1t00958H Brassica oleracea HOM05D000639 ORTHO05D003485 9.6e-08 63.2 335 22.7
Os07g0640000 Oryza sativa ssp. japonica HOM05D000639 ORTHO05D007519 9.6e-08 63.2 340 25.9
BcaC09g51738 Brassica carinata HOM05D000639 ORTHO05D003485 1.3e-07 62.8 334 22.8
BraA03t14956Z Brassica rapa HOM05D000639 ORTHO05D003485 1.3e-07 62.8 335 22.4
Sp7g27370 Schrenkiella parvula HOM05D000639 ORTHO05D003485 1.3e-07 62.8 335 22.4
PGSC0003DMG400008431 Solanum tuberosum HOM05D000639 ORTHO05D003485 1.3e-07 62.8 346 22.5
BolC7t46170H Brassica oleracea HOM05D000639 ORTHO05D003485 1.6e-07 62.4 335 22.4
Hma1.2p1_0798F.1_g219550 Hydrangea macrophylla HOM05D000639 ORTHO05D003485 1.6e-07 62.4 331 22.1
PRCOL_00004012 Prasinoderma coloniale HOM05D000639 ORTHO05D005966 1.6e-07 62.4 266 27.1
CBR_g41214 Chara braunii HOM05D005079 ORTHO05D006362 3.6e-07 61.2 56 48.2
PRCOL_00003184 Prasinoderma coloniale HOM05D002544 ORTHO05D007277 3.6e-07 61.2 158 33.5
MCO05G494 Micromonas commoda HOM05D000639 ORTHO05D007519 4.8e-07 60.8 172 29.1
MD02G1074300 Malus domestica HOM05D000639 ORTHO05D003485 6.2e-07 60.5 332 22.3
Aa31LG2G20970 Aethionema arabicum HOM05D000639 ORTHO05D003485 8.1e-07 60.1 333 22.8
Mapoly0078s0032 Marchantia polymorpha HOM05D000639 ORTHO05D003485 8.1e-07 60.1 360 20.8
MCO05G072 Micromonas commoda HOM05D000639 ORTHO05D003485 8.1e-07 60.1 204 27.9
CBR_g3614 Chara braunii HOM05D000639 ORTHO05D004019 1.4e-06 59.3 290 23.8
DCAR_024066 Daucus carota HOM05D000639 ORTHO05D003485 1.4e-06 59.3 330 22.7
vmacro10810 Vaccinium macrocarpon HOM05D000639 ORTHO05D003485 1.4e-06 59.3 163 28.2
FAN19G0832 Fragaria x ananassa HOM05D000639 ORTHO05D003485 2.4e-06 58.5 339 20.9
Lalb_Chr22g0349761 Lupinus albus HOM05D000639 ORTHO05D003485 2.4e-06 58.5 148 29.1
Gorai.010G081400 Gossypium raimondii HOM05D000639 ORTHO05D003485 3.1e-06 58.2 152 28.3
Lalb_Chr14g0375301 Lupinus albus HOM05D000639 ORTHO05D003485 3.1e-06 58.2 148 29.7
Haze_26970 Corylus avellana HOM05D000639 ORTHO05D003485 4.0e-06 57.8 150 34.0
Thhalv10026945m.g Eutrema salsugineum HOM05D000639 ORTHO05D003485 4.0e-06 57.8 155 29.0
QL02p063169 Quercus lobata HOM05D000639 ORTHO05D003485 5.3e-06 57.4 150 28.0
Rhsim05G0034500 Rhododendron simsii HOM05D000639 ORTHO05D003485 6.9e-06 57.0 148 29.1
Rhsim05G0035500 Rhododendron simsii HOM05D000639 ORTHO05D003485 6.9e-06 57.0 148 29.1
Sed0025603 Sechium edule HOM05D000639 ORTHO05D003485 6.9e-06 57.0 148 29.1
CDE05G2840 Ceratophyllum demersum HOM05D000639 ORTHO05D003485 9.0e-06 56.6 148 29.7


User provided reference genes

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