Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G2314 Fragaria x ananassa HOM05D001087 ORTHO05D005406 2.1e-42 175.6 112 100.0
FvH4_6g54490 Fragaria vesca HOM05D001087 ORTHO05D005406 2.2e-15 85.9 43 95.3
FAN05G2313 Fragaria x ananassa HOM05D001087 ORTHO05D005406 2.2e-15 85.9 43 95.3
FAN14G5433 Fragaria x ananassa HOM05D001087 ORTHO05D005406 2.2e-15 85.9 43 95.3
FAN27G2264 Fragaria x ananassa HOM05D001087 ORTHO05D005406 2.2e-15 85.9 43 95.3
RcHm_v2.0_Chr2g0176781 Rosa chinensis HOM05D001087 ORTHO05D005406 8.2e-15 84.0 43 93.0
COL.COLO4_13413 Corchorus olitorius HOM05D001087 ORTHO05D005406 1.1e-14 83.6 40 97.5
MD09G1000300 Malus domestica HOM05D001087 ORTHO05D005406 1.1e-14 83.6 40 97.5
Prupe.3G316100 Prunus persica HOM05D001087 ORTHO05D005406 1.1e-14 83.6 40 97.5
Nitab4.5_0000519g0390 Nicotiana tabacum HOM05D011017 ORTHO05D005406 3.1e-14 82.0 40 95.0
Nitab4.5_0002901g0050 Nicotiana tabacum HOM05D001087 ORTHO05D005406 3.1e-14 82.0 40 95.0
Ciclev10014134m.g Citrus clementina HOM05D001087 ORTHO05D005406 7.0e-14 80.9 40 92.5
CANSAT64G1951 Cannabis sativa HOM05D001087 ORTHO05D005406 9.1e-14 80.5 40 92.5
Duzib138G0185 Durio zibethinus HOM05D001087 ORTHO05D005406 9.1e-14 80.5 40 92.5
TAR629G2385 Trochodendron aralioides HOM05D001087 ORTHO05D005406 9.1e-14 80.5 40 92.5
Cpa.g.sc70.26 Carica papaya HOM05D001087 ORTHO05D005406 1.2e-13 80.1 40 92.5
CAN.G473.167 Capsicum annuum HOM05D001087 ORTHO05D005406 1.6e-13 79.7 40 92.5
MBI07_g11062_MAGBIO Magnolia biondii HOM05D001087 ORTHO05D005406 1.6e-13 79.7 40 92.5
Potri.014G141100 Populus trichocarpa HOM05D001087 ORTHO05D005406 1.6e-13 79.7 40 90.0
PGR042G1457 Punica granatum HOM05D001087 ORTHO05D005406 1.6e-13 79.7 40 90.0
Sabra14G0106400 Salix brachista HOM05D001087 ORTHO05D005406 1.6e-13 79.7 40 90.0
Eucgr.H05015 Eucalyptus grandis HOM05D001087 ORTHO05D005406 2.0e-13 79.3 40 90.0
Peaxi162Scf00420g00945 Petunia axillaris HOM05D001087 ORTHO05D005406 2.0e-13 79.3 40 92.5
QL02p063912 Quercus lobata HOM05D001087 ORTHO05D005406 2.0e-13 79.3 40 90.0
Atru.chr6.2747 Acer truncatum HOM05D001087 ORTHO05D005406 2.7e-13 79.0 40 90.0
Thecc.04G053100 Theobroma cacao HOM05D001087 ORTHO05D005406 2.7e-13 79.0 40 92.5
GSVIVG01032937001 Vitis vinifera HOM05D001087 ORTHO05D005406 3.5e-13 78.6 40 90.0
MSTRG.3036 Avicennia marina HOM05D001087 ORTHO05D005406 4.5e-13 78.2 40 90.0
Cc07_g01490 Coffea canephora HOM05D001087 ORTHO05D005406 4.5e-13 78.2 40 87.5
Gohir.A08G038200 Gossypium hirsutum HOM05D001087 ORTHO05D005406 4.5e-13 78.2 40 92.5
Gohir.D08G048400 Gossypium hirsutum HOM05D001087 ORTHO05D005406 4.5e-13 78.2 40 92.5
Gorai.004G047900 Gossypium raimondii HOM05D001087 ORTHO05D005406 4.5e-13 78.2 40 92.5
HanXRQChr17g0550851 Helianthus annuus HOM05D001087 ORTHO05D005406 4.5e-13 78.2 40 87.5
Oeu062515.1 Olea europaea HOM05D001087 ORTHO05D005406 4.5e-13 78.2 40 87.5
Solyc02g094610.1 Solanum lycopersicum HOM05D001087 ORTHO05D005406 4.5e-13 78.2 40 90.0
Sopen02g039270 Solanum pennellii HOM05D001087 ORTHO05D005406 4.5e-13 78.2 40 90.0
Actinidia19533 Actinidia chinensis HOM05D001087 ORTHO05D005406 5.9e-13 77.8 40 90.0
ATR0582G201 Amborella trichopoda HOM05D001087 ORTHO05D005406 5.9e-13 77.8 40 85.0
Rhsim08G0036900 Rhododendron simsii HOM05D001087 ORTHO05D005406 5.9e-13 77.8 39 89.7
CSS0025073 Camellia sinensis var. sinensis HOM05D001087 ORTHO05D005406 7.7e-13 77.4 40 90.0
ECA246G3450 Erigeron canadensis HOM05D001087 ORTHO05D005406 7.7e-13 77.4 40 87.5
MELO3C014745.2 Cucumis melo HOM05D001087 ORTHO05D005406 1.0e-12 77.0 40 87.5
CsaV3_3G020140 Cucumis sativus L. HOM05D001087 ORTHO05D005406 1.0e-12 77.0 40 87.5
DCAR_000957 Daucus carota HOM05D001087 ORTHO05D005406 1.0e-12 77.0 40 90.0
SMO353G0092 Selaginella moellendorffii HOM05D001087 ORTHO05D005406 1.0e-12 77.0 40 87.5
ClCG05G012380 Citrullus lanatus HOM05D001087 ORTHO05D005406 1.3e-12 76.6 40 87.5
Ca_08243_v3 Cicer arietinum L. HOM05D001087 ORTHO05D005406 1.7e-12 76.3 40 87.5
Haze_14336 Corylus avellana HOM05D001087 ORTHO05D005406 1.7e-12 76.3 36 94.4
Glyma.16G044400 Glycine max HOM05D001087 ORTHO05D005406 1.7e-12 76.3 40 87.5
Glyma.19G107500 Glycine max HOM05D001087 ORTHO05D005406 1.7e-12 76.3 40 87.5
Lj1g0002000 Lotus japonicus HOM05D001087 ORTHO05D005406 1.7e-12 76.3 40 87.5
Phvul.001G097600 Phaseolus vulgaris HOM05D001087 ORTHO05D005406 1.7e-12 76.3 40 87.5
TPR.G31052 Trifolium pratense HOM05D001087 ORTHO05D005406 1.7e-12 76.3 40 87.5
HPP92_021688 Vanilla planifolia HOM05D001087 ORTHO05D005406 1.7e-12 76.3 40 80.0
VMungo1383G1594 Vigna mungo HOM05D001087 ORTHO05D005406 1.7e-12 76.3 40 87.5
Sed0004915 Sechium edule HOM05D001087 ORTHO05D005406 2.9e-12 75.5 40 85.0
Lsat_1_v5_gn_3_103380 Lactuca sativa HOM05D001087 ORTHO05D005406 3.8e-12 75.1 40 85.0
Lalb_Chr14g0364241 Lupinus albus HOM05D001087 ORTHO05D005406 3.8e-12 75.1 40 85.0
arahy.Tifrunner.gnm1.ann1.65DI7F Arachis hypogaea HOM05D001087 ORTHO05D005406 5.0e-12 74.7 40 85.0
arahy.Tifrunner.gnm1.ann1.C4QHPC Arachis hypogaea HOM05D001087 ORTHO05D005406 5.0e-12 74.7 40 85.0
CiPaw.03G079200 Carya illinoinensis HOM05D001087 ORTHO05D005406 5.0e-12 74.7 40 87.5
Manes.04G095500 Manihot esculenta HOM05D001087 ORTHO05D005406 5.0e-12 74.7 40 85.0
Medtr7g084880 Medicago truncatula HOM05D001087 ORTHO05D005406 5.0e-12 74.7 40 85.0
Ah.02g128690 Amaranthus hybridus HOM05D001087 ORTHO05D005406 6.5e-12 74.3 39 82.1
Migut.F00007 Erythranthe guttata HOM05D001087 ORTHO05D005406 6.5e-12 74.3 41 87.8
SGA_v2.0_scaffold44G16961 Striga asiatica HOM05D001087 ORTHO05D005406 6.5e-12 74.3 40 82.5
SalBow4G1044 Salvia bowleyana HOM05D001087 ORTHO05D005406 1.5e-11 73.2 40 85.0
TWI32G0903 Tripterygium wilfordii HOM05D001087 ORTHO05D005406 1.5e-11 73.2 40 80.0
EL10Ac6g13922 Beta vulgaris HOM05D001087 ORTHO05D005406 1.9e-11 72.8 39 82.1
AUR62017451 Chenopodium quinoa HOM05D001087 ORTHO05D005406 1.9e-11 72.8 39 82.1
AUR62032520 Chenopodium quinoa HOM05D001087 ORTHO05D005406 1.9e-11 72.8 39 82.1
Thhalv10006676m.g Eutrema salsugineum HOM05D001087 ORTHO05D005406 2.5e-11 72.4 40 85.0
Nn4g22026 Nelumbo nucifera HOM05D001087 ORTHO05D005406 2.5e-11 72.4 38 86.8
THA.LOC104805290 Tarenaya hassleriana HOM05D001087 ORTHO05D005406 2.5e-11 72.4 40 85.0
HPP92_021715 Vanilla planifolia HOM05D001087 ORTHO05D005406 2.5e-11 72.4 40 77.5
GSVIVG01031683001 Vitis vinifera HOM05D006947 ORTHO05D005406 2.5e-11 72.4 40 85.0
Hund04150 Selenicereus undatus HOM05D001087 ORTHO05D005406 3.2e-11 72.0 39 79.5
Mapoly0055s0098 Marchantia polymorpha HOM05D001087 ORTHO05D005406 4.2e-11 71.6 40 80.0
Psat0s4626g0080 Pisum sativum HOM05D001087 ORTHO05D005406 4.2e-11 71.6 36 88.9
Sp1g11500 Schrenkiella parvula HOM05D001087 ORTHO05D005406 5.5e-11 71.2 40 82.5
Aa31LG1G1850 Aethionema arabicum HOM05D001087 ORTHO05D005406 7.2e-11 70.9 39 84.6
Peaxi162Scf00082g00223 Petunia axillaris HOM05D001087 ORTHO05D005406 7.2e-11 70.9 36 88.9
Pp3c10_7760 Physcomitrium patens HOM05D001087 ORTHO05D005406 9.4e-11 70.5 43 76.7
SEGI_33424 Sequoiadendron giganteum HOM05D001087 ORTHO05D005406 1.2e-10 70.1 40 80.0
AL1G24570 Arabidopsis lyrata HOM05D001087 ORTHO05D005406 1.6e-10 69.7 40 82.5
AT1G12930 Arabidopsis thaliana HOM05D001087 ORTHO05D005406 1.6e-10 69.7 40 82.5
Carub.0001s1270 Capsella rubella HOM05D001087 ORTHO05D005406 1.6e-10 69.7 40 82.5
CARHR013280 Cardamine hirsuta HOM05D001087 ORTHO05D005406 1.6e-10 69.7 40 82.5
Sc16g0004210 Simmondsia chinensis HOM05D001087 ORTHO05D005406 1.6e-10 69.7 39 82.1
Aqoxy3G01996 Aquilegia oxysepala HOM05D001087 ORTHO05D005406 2.1e-10 69.3 38 86.8
PSO017G2606 Papaver somniferum HOM05D001087 ORTHO05D005406 6.1e-10 67.8 39 76.9
PSO478G2418 Papaver somniferum HOM05D001087 ORTHO05D005406 6.1e-10 67.8 39 76.9
BcaB08g34240 Brassica carinata HOM05D001087 ORTHO05D005406 8.0e-10 67.4 40 77.5
A09p63520 Brassica napus HOM05D001087 ORTHO05D005406 3.0e-09 65.5 40 77.5
BraA09t41703Z Brassica rapa HOM05D001087 ORTHO05D005406 3.0e-09 65.5 40 77.5
C08p47020 Brassica napus HOM05D001087 ORTHO05D005406 8.8e-09 63.9 39 76.9
BolC8t52241H Brassica oleracea HOM05D001087 ORTHO05D005406 8.8e-09 63.9 39 76.9
CDE05G0125 Ceratophyllum demersum HOM05D001087 ORTHO05D005406 2.0e-08 62.8 37 70.3
Pp3c14_8290 Physcomitrium patens HOM05D001087 ORTHO05D005406 2.0e-08 62.8 38 73.7
Pp3c14_8293 Physcomitrium patens HOM05D001087 ORTHO05D005406 2.0e-08 62.8 38 73.7


User provided reference genes

Program Settings