Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G2288 Fragaria x ananassa HOM05D005829 ORTHO05D007246 2.8e-103 378.6 192 100.0
FAN13G0492 Fragaria x ananassa HOM05D005829 ORTHO05D007246 4.0e-102 374.8 192 99.5
FAN08G3097 Fragaria x ananassa HOM05D005829 ORTHO05D007246 1.1e-99 366.7 192 97.4
FAN18G3094 Fragaria x ananassa HOM05D005829 ORTHO05D007246 7.8e-98 360.5 192 95.3
FvH4_5g12290 Fragaria vesca HOM05D005829 ORTHO05D007246 8.4e-92 340.5 192 91.1
FAN18G2130 Fragaria x ananassa HOM05D005829 ORTHO05D007246 8.4e-92 340.5 192 91.1
RcHm_v2.0_Chr7g0185261 Rosa chinensis HOM05D005829 ORTHO05D007246 3.4e-85 318.5 196 86.2
MD06G1215200 Malus domestica HOM05D005829 ORTHO05D007246 1.5e-69 266.5 201 72.1
Prupe.5G220500 Prunus persica HOM05D005829 ORTHO05D007246 3.4e-69 265.4 200 73.5
MD14G1226000 Malus domestica HOM05D005829 ORTHO05D007246 1.1e-67 260.4 202 70.3
Haze_18659 Corylus avellana HOM05D005829 ORTHO05D007246 1.8e-57 226.5 204 62.7
Cfa019789 Carpinus fangiana HOM05D005829 ORTHO05D007246 2.5e-56 222.6 205 62.0
QL10p025073 Quercus lobata HOM05D005829 ORTHO05D007246 4.3e-56 221.9 216 57.9
CANSAT21G0600 Cannabis sativa HOM05D005829 ORTHO05D007246 1.8e-54 216.5 207 58.0
CiPaw.15G129500 Carya illinoinensis HOM05D005829 ORTHO05D007246 2.4e-54 216.1 204 61.8
Manes.01G012500 Manihot esculenta HOM05D005829 ORTHO05D007246 8.5e-52 207.6 214 56.5
Sabra15G0075500 Salix brachista HOM05D005829 ORTHO05D007246 5.5e-51 204.9 210 57.1
GSVIVG01008273001 Vitis vinifera HOM05D005829 ORTHO05D007246 7.2e-51 204.5 211 54.5
arahy.Tifrunner.gnm1.ann1.K96EGP Arachis hypogaea HOM05D005829 ORTHO05D007246 1.4e-49 200.3 202 57.9
PGR083G1885 Punica granatum HOM05D005829 ORTHO05D007246 3.0e-49 199.1 208 55.3
Dinv36156 Davidia involucrata HOM05D005829 ORTHO05D007246 3.9e-49 198.7 209 55.5
Potri.015G053800 Populus trichocarpa HOM05D005829 ORTHO05D007246 3.9e-49 198.7 210 55.2
TWI15G0782 Tripterygium wilfordii HOM05D005829 ORTHO05D007246 8.8e-49 197.6 197 59.4
Manes.05G145805 Manihot esculenta HOM05D005829 ORTHO05D007246 4.4e-48 195.3 203 54.7
Cpa.g.sc13.3 Carica papaya HOM05D005829 ORTHO05D007246 5.7e-48 194.9 205 57.6
Eucgr.K02215 Eucalyptus grandis HOM05D005829 ORTHO05D007246 1.3e-47 193.7 175 58.9
HanXRQChr10g0314971 Helianthus annuus HOM05D005829 ORTHO05D007246 2.8e-47 192.6 179 59.8
Lalb_Chr14g0371231 Lupinus albus HOM05D005829 ORTHO05D007246 2.8e-47 192.6 182 58.2
ClCG06G014890 Citrullus lanatus HOM05D005829 ORTHO05D007246 3.7e-47 192.2 204 55.4
Duzib068G0473 Durio zibethinus HOM05D005829 ORTHO05D007246 2.0e-45 186.4 214 56.5
Aqoxy3G00323 Aquilegia oxysepala HOM05D005829 ORTHO05D007246 2.6e-45 186.0 185 57.8
Lsat_1_v5_gn_8_146520 Lactuca sativa HOM05D005829 ORTHO05D007246 2.6e-45 186.0 178 57.3
Duzib084G1006 Durio zibethinus HOM05D005829 ORTHO05D007246 7.7e-45 184.5 216 50.9
Cc04_g07210 Coffea canephora HOM05D005829 ORTHO05D007246 1.0e-44 184.1 186 55.9
MELO3C017300.2 Cucumis melo HOM05D005829 ORTHO05D007246 1.7e-44 183.3 205 56.6
arahy.Tifrunner.gnm1.ann1.SID7TX Arachis hypogaea HOM05D005829 ORTHO05D007246 3.8e-44 182.2 232 49.6
Ciclev10022208m.g Citrus clementina HOM05D005829 ORTHO05D007246 3.8e-44 182.2 219 53.0
Sc12g0006790 Simmondsia chinensis HOM05D005829 ORTHO05D007246 5.0e-44 181.8 200 51.0
Hund02393 Selenicereus undatus HOM05D005829 ORTHO05D007246 8.5e-44 181.0 200 54.0
CsaV3_1G003750 Cucumis sativus L. HOM05D005829 ORTHO05D007246 1.1e-43 180.6 202 55.0
TAR629G3023 Trochodendron aralioides HOM05D005829 ORTHO05D007246 1.9e-43 179.9 160 60.0
Oeu046995.1 Olea europaea HOM05D005829 ORTHO05D007246 1.2e-42 177.2 196 51.5
Gohir.D09G173000 Gossypium hirsutum HOM05D005829 ORTHO05D007246 2.7e-42 176.0 210 51.9
Thecc.03G033800 Theobroma cacao HOM05D005829 ORTHO05D007246 3.6e-42 175.6 214 51.9
CSS0021100 Camellia sinensis var. sinensis HOM05D005829 ORTHO05D007246 4.7e-42 175.3 220 51.4
Gorai.006G194900 Gossypium raimondii HOM05D005829 ORTHO05D007246 8.0e-42 174.5 210 51.4
Gohir.A09G177500 Gossypium hirsutum HOM05D005829 ORTHO05D007246 1.8e-41 173.3 210 51.0
CAN.G423.7 Capsicum annuum HOM05D005829 ORTHO05D007246 1.5e-40 170.2 189 53.4
Atru.chr9.821 Acer truncatum HOM05D005829 ORTHO05D007246 2.0e-40 169.9 214 50.0
ECA234G2972 Erigeron canadensis HOM05D005829 ORTHO05D007246 2.6e-40 169.5 188 54.3
PSO478G3740 Papaver somniferum HOM05D005829 ORTHO05D007246 4.4e-40 168.7 193 48.2
EL10Ac5g11432 Beta vulgaris HOM05D005829 ORTHO05D007246 7.4e-40 167.9 143 60.1
Nitab4.5_0010801g0020 Nicotiana tabacum HOM05D005829 ORTHO05D007246 7.4e-40 167.9 196 52.6
PSO017G1947 Papaver somniferum HOM05D005829 ORTHO05D007246 7.4e-40 167.9 210 49.5
Oeu006380.1 Olea europaea HOM05D005829 ORTHO05D007246 1.3e-39 167.2 196 50.0
FAN14G0369 Fragaria x ananassa HOM05D005829 ORTHO05D007246 2.8e-39 166.0 91 90.1
MSTRG.11323 Avicennia marina HOM05D005829 ORTHO05D007246 6.3e-39 164.9 193 51.8
ATR0665G268 Amborella trichopoda HOM05D005829 ORTHO05D007246 8.2e-39 164.5 154 56.5
Nitab4.5_0011561g0030 Nicotiana tabacum HOM05D005829 ORTHO05D007246 8.2e-39 164.5 196 52.0
PGSC0003DMG400004051 Solanum tuberosum HOM05D005829 ORTHO05D007246 2.4e-38 162.9 182 52.2
Potri.015G054100 Populus trichocarpa HOM05D005829 ORTHO05D007246 5.3e-38 161.8 149 59.1
Solyc06g069170.4 Solanum lycopersicum HOM05D005829 ORTHO05D007246 7.0e-38 161.4 190 50.5
Migut.I00369 Erythranthe guttata HOM05D005829 ORTHO05D007246 1.2e-37 160.6 138 59.4
Sopen06g026440 Solanum pennellii HOM05D005829 ORTHO05D007246 2.0e-37 159.8 190 50.5
Actinidia06971 Actinidia chinensis HOM05D005829 ORTHO05D007246 2.6e-37 159.5 205 47.8
Ah.11g045030 Amaranthus hybridus HOM05D005829 ORTHO05D007246 3.5e-37 159.1 154 55.8
Sed0000228 Sechium edule HOM05D005829 ORTHO05D007246 1.0e-36 157.5 168 52.4
CARHR067000 Cardamine hirsuta HOM05D005829 ORTHO05D007246 1.3e-36 157.1 217 49.8
THA.LOC104813901 Tarenaya hassleriana HOM05D005829 ORTHO05D007246 2.2e-36 156.4 212 49.5
unitig_749.g13417 Utricularia gibba HOM05D005829 ORTHO05D007246 5.0e-36 155.2 120 62.5
BcaB03g15734 Brassica carinata HOM05D005829 ORTHO05D007246 2.5e-35 152.9 215 49.8
Peaxi162Scf00013g00945 Petunia axillaris HOM05D005829 ORTHO05D007246 2.5e-35 152.9 160 54.4
Carub.0002s2066 Capsella rubella HOM05D005829 ORTHO05D007246 4.2e-35 152.1 221 48.9
DCAR_023199 Daucus carota HOM05D005829 ORTHO05D007246 5.5e-35 151.8 152 56.6
AL2G33720 Arabidopsis lyrata HOM05D005829 ORTHO05D007246 7.2e-35 151.4 218 49.5
Rhsim13G0208500 Rhododendron simsii HOM05D005829 ORTHO05D007246 7.2e-35 151.4 234 43.6
Lj2g0004175 Lotus japonicus HOM05D005829 ORTHO05D007246 2.1e-34 149.8 197 51.8
Aa31LG4G4200 Aethionema arabicum HOM05D005829 ORTHO05D007246 2.7e-34 149.4 217 46.1
Nn1g06955 Nelumbo nucifera HOM05D005829 ORTHO05D007246 6.1e-34 148.3 194 47.4
CDE11G0392 Ceratophyllum demersum HOM05D005829 ORTHO05D007246 1.4e-33 147.1 149 52.3
HPP92_013263 Vanilla planifolia HOM05D005829 ORTHO05D007246 5.2e-33 145.2 189 48.7
CDE05G0659 Ceratophyllum demersum HOM05D005829 ORTHO05D007246 6.7e-33 144.8 152 49.3
BcaC08g45615 Brassica carinata HOM05D005829 ORTHO05D007246 8.8e-33 144.4 216 46.8
Sp5g29090 Schrenkiella parvula HOM05D005829 ORTHO05D007246 1.2e-32 144.1 217 49.3
SGA_v2.0_scaffold25G10988 Striga asiatica HOM05D005829 ORTHO05D007246 1.5e-32 143.7 231 43.7
HPP92_013214 Vanilla planifolia HOM05D005829 ORTHO05D007246 2.6e-32 142.9 189 48.1
vmacro04041 Vaccinium macrocarpon HOM05D005829 ORTHO05D007246 3.3e-32 142.5 252 40.5
C06p33760 Brassica napus HOM05D005829 ORTHO05D007246 1.3e-31 140.6 216 45.8
Ca_25501_v3 Cicer arietinum L. HOM05D005829 ORTHO05D007246 2.2e-31 139.8 195 47.7
A02p18930 Brassica napus HOM05D005829 ORTHO05D007246 2.8e-31 139.4 216 44.0
BraA02t06935Z Brassica rapa HOM05D005829 ORTHO05D007246 4.8e-31 138.7 216 44.9
BcaC03g15467 Brassica carinata HOM05D005829 ORTHO05D007246 8.2e-31 137.9 216 44.9
C02p31470 Brassica napus HOM05D005829 ORTHO05D007246 8.2e-31 137.9 216 44.9
BolC2t09178H Brassica oleracea HOM05D005829 ORTHO05D007246 8.2e-31 137.9 216 44.9
BolC6t38490H Brassica oleracea HOM05D005829 ORTHO05D007246 1.4e-30 137.1 216 45.4
Thhalv10019131m.g Eutrema salsugineum HOM05D005829 ORTHO05D007246 1.8e-30 136.7 219 43.8
Gohir.A08G094610 Gossypium hirsutum HOM05D005829 ORTHO05D007246 2.4e-30 136.3 179 47.5
BcaB05g24816 Brassica carinata HOM05D005829 ORTHO05D007246 3.1e-30 136.0 219 43.4
BcaB05g24818 Brassica carinata HOM05D005829 ORTHO05D007246 3.1e-30 136.0 219 43.4
Os03g0710600 Oryza sativa ssp. japonica HOM05D005829 ORTHO05D007246 3.5e-29 132.5 204 44.1
A07p29590 Brassica napus HOM05D005829 ORTHO05D007246 4.5e-29 132.1 217 43.3
AT1G73885 Arabidopsis thaliana HOM05D005829 ORTHO05D007246 2.2e-28 129.8 191 46.6
BraA07t30600Z Brassica rapa HOM05D005829 ORTHO05D007246 5.0e-28 128.6 216 44.4
BcaC09g48855 Brassica carinata HOM05D005829 ORTHO05D007246 6.5e-28 128.3 114 60.5
C01p45190 Brassica napus HOM05D005829 ORTHO05D007246 6.5e-28 128.3 114 60.5
BolC1t04492H Brassica oleracea HOM05D005829 ORTHO05D007246 6.5e-28 128.3 114 60.5
Ca_00264_v3 Cicer arietinum L. HOM05D005829 ORTHO05D007246 6.5e-28 128.3 188 45.7
Zm00001eb054790 Zea mays HOM05D005829 ORTHO05D007246 8.5e-28 127.9 158 51.3
Zm00001eb216440 Zea mays HOM05D005829 ORTHO05D007246 4.2e-27 125.6 159 50.3
SEGI_06072 Sequoiadendron giganteum HOM05D005829 ORTHO05D007246 5.5e-27 125.2 164 46.3
BcaC03g15466 Brassica carinata HOM05D005829 ORTHO05D007246 2.7e-26 122.9 202 46.0
Medtr6g084620 Medicago truncatula HOM05D005829 ORTHO05D007246 8.0e-26 121.3 195 44.6
TPR.G35237 Trifolium pratense HOM05D005829 ORTHO05D007246 3.1e-22 109.4 100 56.0
AagrBONN_evm.TU.Sc2ySwM_228.2224 Anthoceros agrestis HOM05D005829 ORTHO05D007246 9.1e-22 107.8 84 60.7
AagrBONN_evm.TU.Sc2ySwM_228.1174 Anthoceros agrestis HOM05D005829 ORTHO05D007246 1.0e-20 104.4 130 46.9
Nn3g17806 Nelumbo nucifera HOM05D005829 ORTHO05D007246 7.2e-19 98.2 96 51.0
COL.COLO4_04672 Corchorus olitorius HOM05D005829 ORTHO05D007246 2.3e-17 93.2 157 39.5
THA.LOC104813291 Tarenaya hassleriana HOM05D005829 ORTHO05D007246 1.8e-14 83.6 69 69.6
AUR62025855 Chenopodium quinoa HOM05D005829 ORTHO05D007246 1.6e-13 80.5 176 38.6
Pp3c4_12650 Physcomitrium patens HOM05D005829 ORTHO05D007246 2.7e-13 79.7 148 36.5
Pp3c4_12780 Physcomitrium patens HOM05D005829 ORTHO05D007246 2.7e-13 79.7 148 36.5
FAN22G1271 Fragaria x ananassa HOM05D038641 ORTHO05D035590 4.5e-13 79.0 65 72.3
Mapoly0028s0124 Marchantia polymorpha HOM05D005829 ORTHO05D007246 4.5e-13 79.0 147 36.1
AUR62029856 Chenopodium quinoa HOM05D005829 ORTHO05D007246 1.0e-12 77.8 193 37.3
Phvul.004G158500 Phaseolus vulgaris HOM05D005829 ORTHO05D007246 6.6e-12 75.1 203 29.6
Actinidia24460 Actinidia chinensis HOM05D005829 ORTHO05D007246 4.3e-11 72.4 70 52.9
Glyma.07G090700 Glycine max HOM05D005829 ORTHO05D007246 5.2e-09 65.5 105 39.0
CBR_g29305 Chara braunii HOM05D005829 ORTHO05D007246 2.6e-08 63.2 36 72.2
Glyma.09G185300 Glycine max HOM05D005829 ORTHO05D007246 2.9e-07 59.7 225 30.2
VMungo0464G0155 Vigna mungo HOM05D006108 ORTHO05D007605 4.9e-07 58.9 160 30.0


User provided reference genes

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