Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G2277 Fragaria x ananassa HOM05D005248 ORTHO05D006409 4.3e-98 361.3 179 100.0
FAN13G2612 Fragaria x ananassa HOM05D005248 ORTHO05D006409 5.8e-95 350.9 179 96.6
FAN08G1048 Fragaria x ananassa HOM05D005248 ORTHO05D006409 1.9e-93 345.9 179 95.0
FvH4_5g09730 Fragaria vesca HOM05D005248 ORTHO05D006409 3.2e-93 345.1 179 95.0
FAN18G0065 Fragaria x ananassa HOM05D005248 ORTHO05D006409 3.5e-92 341.7 179 93.9
RcHm_v2.0_Chr7g0188501 Rosa chinensis HOM05D005248 ORTHO05D006409 1.8e-88 329.3 179 88.8
MD14G1145800 Malus domestica HOM05D005248 ORTHO05D006409 3.4e-79 298.5 179 80.4
Prupe.5G140100 Prunus persica HOM05D005248 ORTHO05D006409 9.9e-79 297.0 179 81.6
MD06G1128800 Malus domestica HOM05D005248 ORTHO05D006409 6.6e-75 284.3 179 78.2
Thecc.03G142000 Theobroma cacao HOM05D005248 ORTHO05D006409 4.5e-63 245.0 181 69.1
COL.COLO4_37271 Corchorus olitorius HOM05D005248 ORTHO05D006409 1.0e-62 243.8 181 69.6
Ciclev10032866m.g Citrus clementina HOM05D005248 ORTHO05D006409 1.3e-62 243.4 190 65.8
Potri.015G108300 Populus trichocarpa HOM05D005248 ORTHO05D006409 1.7e-62 243.0 186 66.7
Sabra12G0080100 Salix brachista HOM05D005248 ORTHO05D006409 2.2e-62 242.7 189 65.6
MSTRG.22815 Avicennia marina HOM05D005248 ORTHO05D006409 4.9e-62 241.5 181 68.0
Cfa018696 Carpinus fangiana HOM05D005248 ORTHO05D006409 4.9e-62 241.5 182 69.2
Gorai.001G053700 Gossypium raimondii HOM05D005248 ORTHO05D006409 1.9e-61 239.6 179 67.0
Gohir.D07G050600 Gossypium hirsutum HOM05D005248 ORTHO05D006409 3.2e-61 238.8 179 66.5
Gohir.A07G046300 Gossypium hirsutum HOM05D005248 ORTHO05D006409 5.5e-61 238.0 179 67.0
Duzib205G1954 Durio zibethinus HOM05D005248 ORTHO05D006409 1.6e-60 236.5 181 66.9
Psat7g039840 Pisum sativum HOM05D005248 ORTHO05D006409 2.7e-60 235.7 168 67.9
TWI39G0330 Tripterygium wilfordii HOM05D005248 ORTHO05D006409 2.7e-60 235.7 187 65.8
QL10p000295 Quercus lobata HOM05D005248 ORTHO05D006409 3.5e-60 235.3 182 67.0
Actinidia25510 Actinidia chinensis HOM05D005248 ORTHO05D006409 1.0e-59 233.8 188 63.8
Rhsim08G0198900 Rhododendron simsii HOM05D005248 ORTHO05D006409 1.3e-59 233.4 184 65.8
VMungo0251G2692 Vigna mungo HOM05D005248 ORTHO05D006409 1.8e-59 233.0 142 77.5
Nitab4.5_0000976g0180 Nicotiana tabacum HOM05D005248 ORTHO05D006409 3.0e-59 232.3 187 66.8
Manes.14G043700 Manihot esculenta HOM05D005248 ORTHO05D006409 6.7e-59 231.1 191 65.4
Medtr8g096070 Medicago truncatula HOM05D005248 ORTHO05D006409 6.7e-59 231.1 183 63.4
CSS0027803 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 8.7e-59 230.7 181 66.3
Lj1g0011989 Lotus japonicus HOM05D005248 ORTHO05D006409 1.9e-58 229.6 182 64.8
CSS0031400 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 3.3e-58 228.8 185 63.2
CAN.G1008.49 Capsicum annuum HOM05D005248 ORTHO05D006409 4.3e-58 228.4 187 65.8
Hma1.2p1_0452F.1_g155900 Hydrangea macrophylla HOM05D005248 ORTHO05D006409 1.3e-57 226.9 189 63.0
Lalb_Chr12g0202581 Lupinus albus HOM05D005248 ORTHO05D006409 1.3e-57 226.9 179 63.7
CANSAT78G1265 Cannabis sativa HOM05D005248 ORTHO05D006409 2.8e-57 225.7 196 61.7
Cpa.g.sc13.186 Carica papaya HOM05D005248 ORTHO05D006409 3.7e-57 225.3 189 63.5
Cc04_g05750 Coffea canephora HOM05D005248 ORTHO05D006409 8.2e-57 224.2 182 65.4
Glyma.04G202600 Glycine max HOM05D005248 ORTHO05D006409 8.2e-57 224.2 179 63.7
Oeu017204.1 Olea europaea HOM05D005248 ORTHO05D006409 8.2e-57 224.2 182 64.8
arahy.Tifrunner.gnm1.ann1.1UQX8S Arachis hypogaea HOM05D005248 ORTHO05D006409 1.1e-56 223.8 180 65.0
PGR119G0545 Punica granatum HOM05D005248 ORTHO05D006409 1.1e-56 223.8 191 59.2
GSVIVG01005682001 Vitis vinifera HOM05D005248 ORTHO05D006409 1.1e-56 223.8 179 63.1
Haze_07087 Corylus avellana HOM05D005248 ORTHO05D006409 1.4e-56 223.4 223 57.4
Dinv13708 Davidia involucrata HOM05D005248 ORTHO05D006409 1.4e-56 223.4 189 66.1
SGA_v2.0_scaffold37G14670 Striga asiatica HOM05D005248 ORTHO05D006409 1.4e-56 223.4 181 65.2
Aqoxy5G00839 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 1.8e-56 223.0 184 63.6
Phvul.009G158800 Phaseolus vulgaris HOM05D005248 ORTHO05D006409 1.8e-56 223.0 184 60.9
Eucgr.H01475 Eucalyptus grandis HOM05D005248 ORTHO05D006409 4.0e-56 221.9 196 61.2
Medtr3g098480 Medicago truncatula HOM05D005248 ORTHO05D006409 4.0e-56 221.9 183 61.2
SalBow1G4990 Salvia bowleyana HOM05D005248 ORTHO05D006409 4.0e-56 221.9 181 64.1
PGSC0003DMG400014171 Solanum tuberosum HOM05D005248 ORTHO05D006409 5.3e-56 221.5 187 62.0
arahy.Tifrunner.gnm1.ann1.4X1L65 Arachis hypogaea HOM05D005248 ORTHO05D006409 1.2e-55 220.3 180 62.8
arahy.Tifrunner.gnm1.ann1.JK6BKQ Arachis hypogaea HOM05D005248 ORTHO05D006409 1.5e-55 219.9 179 63.7
arahy.Tifrunner.gnm1.ann1.X29WZH Arachis hypogaea HOM05D005248 ORTHO05D006409 1.5e-55 219.9 180 64.4
CsaV3_2G009360 Cucumis sativus L. HOM05D005248 ORTHO05D006409 2.0e-55 219.5 151 68.2
Glyma.06G162900 Glycine max HOM05D005248 ORTHO05D006409 2.0e-55 219.5 183 61.2
ECA247G0315 Erigeron canadensis HOM05D005248 ORTHO05D000263 2.6e-55 219.2 174 63.8
Oeu051184.1 Olea europaea HOM05D005248 ORTHO05D006409 2.6e-55 219.2 179 63.7
Sopen03g037010 Solanum pennellii HOM05D005248 ORTHO05D006409 2.6e-55 219.2 187 61.5
Sc14g0003150 Simmondsia chinensis HOM05D005248 ORTHO05D006409 3.4e-55 218.8 179 60.3
Atru.chr6.1938 Acer truncatum HOM05D005248 ORTHO05D006409 7.6e-55 217.6 225 54.7
Aqoxy4G00470 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 7.6e-55 217.6 186 63.4
MELO3C008773.2 Cucumis melo HOM05D005248 ORTHO05D006409 7.6e-55 217.6 156 66.7
THA.LOC104825042 Tarenaya hassleriana HOM05D005248 ORTHO05D006409 7.6e-55 217.6 185 60.0
Sabra15G0130900 Salix brachista HOM05D001551 ORTHO05D000263 1.3e-54 216.9 248 49.2
TAR371G0926 Trochodendron aralioides HOM05D005248 ORTHO05D006409 1.3e-54 216.9 185 57.8
AUR62032207 Chenopodium quinoa HOM05D005248 ORTHO05D006409 1.7e-54 216.5 185 61.6
Sed0027310 Sechium edule HOM05D005248 ORTHO05D006409 1.7e-54 216.5 192 58.9
Hund02516 Selenicereus undatus HOM05D005248 ORTHO05D006409 2.9e-54 215.7 179 60.3
SGA_v2.0_scaffold44G16640 Striga asiatica HOM05D005248 ORTHO05D006409 2.9e-54 215.7 179 63.1
AUR62043379 Chenopodium quinoa HOM05D005248 ORTHO05D006409 3.8e-54 215.3 185 62.2
ClCG11G000550 Citrullus lanatus HOM05D005248 ORTHO05D006409 3.8e-54 215.3 199 56.8
Ca_16820_v3 Cicer arietinum L. HOM05D000402 ORTHO05D000263 6.5e-54 214.5 145 70.3
AUR62043864 Chenopodium quinoa HOM05D005248 ORTHO05D006409 8.4e-54 214.2 185 61.6
Thhalv10014773m.g Eutrema salsugineum HOM05D005248 ORTHO05D006409 8.4e-54 214.2 189 58.7
DCAR_025638 Daucus carota HOM05D005248 ORTHO05D006409 1.1e-53 213.8 194 58.8
Hund10025 Selenicereus undatus HOM05D005248 ORTHO05D006409 1.4e-53 213.4 183 58.5
Glyma.08G007100 Glycine max HOM05D005248 ORTHO05D006409 1.9e-53 213.0 130 75.4
EL10Ac5g11271 Beta vulgaris HOM05D005248 ORTHO05D006409 3.2e-53 212.2 182 58.8
HanXRQChr02g0034361 Helianthus annuus HOM05D005248 ORTHO05D006409 5.5e-53 211.5 191 60.7
Lsat_1_v5_gn_1_30140 Lactuca sativa HOM05D005248 ORTHO05D006409 5.5e-53 211.5 161 64.6
Lj5A86T66 Lonicera japonica HOM05D005248 ORTHO05D006409 7.1e-53 211.1 190 58.9
Nitab4.5_0012624g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 2.1e-52 209.5 139 72.7
vmacro19110 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 2.7e-52 209.1 191 59.2
AL8G25260 Arabidopsis lyrata HOM05D005248 ORTHO05D006409 4.6e-52 208.4 183 57.4
AT5G51040 Arabidopsis thaliana HOM05D005248 ORTHO05D006409 6.1e-52 208.0 186 55.9
PSO063G1686 Papaver somniferum HOM05D005248 ORTHO05D006409 1.3e-51 206.8 128 74.2
PSO782G4423 Papaver somniferum HOM05D005248 ORTHO05D006409 3.0e-51 205.7 195 55.9
Migut.I00662 Erythranthe guttata HOM05D005248 ORTHO05D006409 3.9e-51 205.3 181 60.2
Zm00001eb198100 Zea mays HOM05D005248 ORTHO05D006409 5.1e-51 204.9 180 57.2
unitig_61.g26221 Utricularia gibba HOM05D005248 ORTHO05D006409 6.7e-51 204.5 180 60.0
Ah.11g047000 Amaranthus hybridus HOM05D005248 ORTHO05D006409 1.1e-50 203.8 183 57.9
Nn3g16250 Nelumbo nucifera HOM05D005248 ORTHO05D006409 1.1e-50 203.8 181 56.9
Sabra15G0128600 Salix brachista HOM05D005248 ORTHO05D006409 1.1e-50 203.8 270 43.7
CARHR257090 Cardamine hirsuta HOM05D005248 ORTHO05D006409 1.5e-50 203.4 189 56.1
BcaB05g24022 Brassica carinata HOM05D005248 ORTHO05D006409 3.3e-50 202.2 189 56.6
Atru.chr10.902 Acer truncatum HOM05D005248 ORTHO05D006409 4.3e-50 201.8 163 62.0
CDE06G0011 Ceratophyllum demersum HOM05D005248 ORTHO05D006409 7.4e-50 201.1 181 56.4
Carub.0008s1104 Capsella rubella HOM05D005248 ORTHO05D006409 1.3e-49 200.3 187 53.5
vmacro16762 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 1.3e-49 200.3 142 69.0
CiPaw.12G000300 Carya illinoinensis HOM05D005248 ORTHO05D006409 1.6e-49 199.9 163 63.2
BcaC03g14629 Brassica carinata HOM05D005248 ORTHO05D006409 2.2e-49 199.5 186 55.4
Peaxi162Scf00314g00750 Petunia axillaris HOM05D005248 ORTHO05D006409 2.2e-49 199.5 184 59.2
Sp6g13210 Schrenkiella parvula HOM05D005248 ORTHO05D006409 2.2e-49 199.5 189 55.0
A02p12520 Brassica napus HOM05D005248 ORTHO05D006409 2.8e-49 199.1 183 54.6
A10p08030 Brassica napus HOM05D005248 ORTHO05D006409 2.8e-49 199.1 189 55.6
Aa31LG3G7530 Aethionema arabicum HOM05D005248 ORTHO05D006409 4.8e-49 198.4 204 54.9
BraSC35t45996Z Brassica rapa HOM05D005248 ORTHO05D006409 4.8e-49 198.4 185 54.6
HPP92_006440 Vanilla planifolia HOM05D005248 ORTHO05D006409 4.8e-49 198.4 179 58.1
Lj9C488G13 Lonicera japonica HOM05D005248 ORTHO05D006409 6.3e-49 198.0 115 75.7
BolC9t56844H Brassica oleracea HOM05D005248 ORTHO05D006409 1.1e-48 197.2 190 54.7
vmacro19116 Vaccinium macrocarpon HOM05D000402 ORTHO05D000263 1.4e-48 196.8 189 55.0
ATR0582G036 Amborella trichopoda HOM05D005248 ORTHO05D006409 2.4e-48 196.1 183 59.0
BraA02t06314Z Brassica rapa HOM05D005248 ORTHO05D006409 1.3e-46 190.3 190 52.1
BolC2t08204H Brassica oleracea HOM05D005248 ORTHO05D006409 2.9e-46 189.1 195 53.8
Nitab4.5_0010893g0020 Nicotiana tabacum HOM05D005248 ORTHO05D006409 3.8e-46 188.7 160 64.4
Os11g0528300 Oryza sativa ssp. japonica HOM05D005248 ORTHO05D006409 1.1e-45 187.2 185 55.7
C09p39650 Brassica napus HOM05D005248 ORTHO05D006409 1.9e-45 186.4 189 52.4
CSS0028005 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 1.5e-42 176.8 160 61.2
PSO541G2841 Papaver somniferum HOM05D005248 ORTHO05D006409 2.0e-42 176.4 128 66.4
Lsat_1_v5_gn_9_37901 Lactuca sativa HOM05D005248 ORTHO05D006409 9.7e-42 174.1 141 61.0
C02p20620 Brassica napus HOM05D005248 ORTHO05D006409 1.7e-41 173.3 114 65.8
Pp3c16_25170 Physcomitrium patens HOM05D005248 ORTHO05D006409 6.9e-40 167.9 125 58.4
SMO146G0118 Selaginella moellendorffii HOM05D005248 ORTHO05D006409 2.5e-37 159.5 123 56.1
Mapoly0022s0036 Marchantia polymorpha HOM05D005248 ORTHO05D006409 9.4e-37 157.5 124 57.3
Gohir.A07G044532 Gossypium hirsutum HOM05D005248 ORTHO05D006409 1.7e-33 146.7 87 73.6
Rhsim12G0181600 Rhododendron simsii HOM05D005248 ORTHO05D006409 4.8e-33 145.2 91 75.8
Lj4g0025558 Lotus japonicus HOM05D005248 ORTHO05D006409 5.3e-32 141.7 142 57.0
TPR.G12753 Trifolium pratense HOM05D005248 ORTHO05D006409 9.4e-29 131.0 72 77.8
Zm00001eb113310 Zea mays HOM05D005248 ORTHO05D006409 3.6e-28 129.0 78 70.5
Cre12.g550750 Chlamydomonas reinhardtii HOM05D005248 ORTHO05D006409 1.0e-27 127.5 132 48.5
PSO675G1946 Papaver somniferum HOM05D005248 ORTHO05D006409 1.4e-27 127.1 116 59.5
Nitab4.5_0002540g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 4.4e-26 122.1 130 56.2
Gohir.A11G038833 Gossypium hirsutum HOM05D005248 ORTHO05D006409 7.4e-26 121.3 86 65.1
TPR.G20580 Trifolium pratense HOM05D005248 ORTHO05D006409 2.4e-24 116.3 112 58.0
PRCOL_00003706 Prasinoderma coloniale HOM05D005248 ORTHO05D006409 8.5e-22 107.8 116 42.2
BcaC04g20744 Brassica carinata HOM05D005248 ORTHO05D006409 1.5e-21 107.1 72 61.1
QL10p017282 Quercus lobata HOM05D005248 ORTHO05D006409 9.4e-21 104.4 65 67.7
MCO01G238 Micromonas commoda HOM05D005248 ORTHO05D006409 1.4e-19 100.5 165 35.8
CAN.G412.4 Capsicum annuum HOM05D005248 ORTHO05D006409 9.8e-18 94.4 59 69.5
Gorai.007G045300 Gossypium raimondii HOM05D005248 ORTHO05D006409 9.1e-16 87.8 85 61.2
AagrBONN_evm.TU.Sc2ySwM_368.2623 Anthoceros agrestis HOM05D005248 ORTHO05D006409 2.8e-09 66.2 106 41.5
TPR.G21935 Trifolium pratense HOM05D005248 ORTHO05D006409 4.1e-08 62.4 35 74.3


User provided reference genes

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