Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G2254 Fragaria x ananassa HOM05D004955 ORTHO05D005965 0.0e+00 1115.9 571 100.0
FAN13G2236 Fragaria x ananassa HOM05D004955 ORTHO05D005965 1.2e-300 1035.8 561 96.3
FvH4_5g21180 Fragaria vesca HOM05D004955 ORTHO05D005965 3.4e-290 1001.1 560 94.1
FAN18G2324 Fragaria x ananassa HOM05D004955 ORTHO05D005965 4.4e-290 1000.7 577 91.9
FAN08G3652 Fragaria x ananassa HOM05D004955 ORTHO05D005965 1.1e-288 996.1 560 93.6
RcHm_v2.0_Chr7g0208321 Rosa chinensis HOM05D004955 ORTHO05D005965 7.1e-280 966.8 559 90.7
Prupe.5G046300 Prunus persica HOM05D004955 ORTHO05D005965 1.4e-251 872.8 559 81.2
MD06G1040100 Malus domestica HOM05D004955 ORTHO05D005965 5.9e-250 867.5 560 81.2
QL12p007112 Quercus lobata HOM05D004955 ORTHO05D005965 6.7e-238 827.4 557 77.6
Lj3A396G10 Lonicera japonica HOM05D004955 ORTHO05D005965 2.6e-237 825.5 556 74.8
Dinv28916 Davidia involucrata HOM05D004955 ORTHO05D005965 4.1e-235 818.1 559 75.7
GSVIVG01013229001 Vitis vinifera HOM05D004955 ORTHO05D005965 9.1e-235 817.0 559 75.1
MD16G1269200 Malus domestica HOM05D004955 ORTHO05D005965 5.5e-232 807.7 567 76.4
Duzib213G0438 Durio zibethinus HOM05D004955 ORTHO05D005965 4.7e-231 804.7 567 73.4
GSVIVG01011242001 Vitis vinifera HOM05D004955 ORTHO05D005965 4.7e-231 804.7 556 74.6
TAR375G0042 Trochodendron aralioides HOM05D004955 ORTHO05D005965 1.8e-230 802.7 559 73.7
Thecc.07G110200 Theobroma cacao HOM05D004955 ORTHO05D005965 2.3e-230 802.4 567 73.2
Gohir.A01G044000 Gossypium hirsutum HOM05D004955 ORTHO05D005965 6.7e-230 800.8 564 73.0
COL.COLO4_17563 Corchorus olitorius HOM05D004955 ORTHO05D005965 1.1e-229 800.0 567 72.7
Potri.001G146900 Populus trichocarpa HOM05D004955 ORTHO05D005965 1.1e-229 800.0 558 74.4
Gorai.002G043000 Gossypium raimondii HOM05D004955 ORTHO05D005965 4.4e-229 798.1 564 73.2
Gohir.D01G034800 Gossypium hirsutum HOM05D004955 ORTHO05D005965 2.8e-228 795.4 564 72.9
CSS0030337 Camellia sinensis var. sinensis HOM05D004955 ORTHO05D005965 4.8e-228 794.7 559 73.3
CSS0027312 Camellia sinensis var. sinensis HOM05D004955 ORTHO05D005965 6.3e-228 794.3 559 73.2
Ciclev10031124m.g Citrus clementina HOM05D004955 ORTHO05D005965 7.0e-227 790.8 556 74.6
CiPaw.12G060300 Carya illinoinensis HOM05D004955 ORTHO05D005965 1.2e-226 790.0 568 72.9
Glyma.20G095000 Glycine max HOM05D004955 ORTHO05D005965 5.0e-225 784.6 569 72.2
Psat2g174720 Pisum sativum HOM05D004955 ORTHO05D005965 5.0e-225 784.6 560 72.7
DCAR_005602 Daucus carota HOM05D004955 ORTHO05D005965 6.5e-225 784.3 556 72.3
Atru.BG.31.p Acer truncatum HOM05D004955 ORTHO05D005965 1.1e-224 783.5 568 72.5
TWI81G0724 Tripterygium wilfordii HOM05D004955 ORTHO05D005965 1.1e-224 783.5 560 73.6
Sabra01G0115600 Salix brachista HOM05D004955 ORTHO05D005965 1.5e-224 783.1 558 73.1
arahy.Tifrunner.gnm1.ann1.JVPY2N Arachis hypogaea HOM05D004955 ORTHO05D005965 1.9e-224 782.7 557 72.7
arahy.Tifrunner.gnm1.ann1.U6D9EY Arachis hypogaea HOM05D004955 ORTHO05D005965 1.9e-224 782.7 557 72.7
vmacro21668 Vaccinium macrocarpon HOM05D004955 ORTHO05D005965 1.9e-224 782.7 566 71.9
Rhsim09G0128800 Rhododendron simsii HOM05D004955 ORTHO05D005965 5.5e-224 781.2 555 73.0
Ca_24631_v3 Cicer arietinum L. HOM05D004955 ORTHO05D005965 7.2e-224 780.8 571 71.8
VMungo1215G2917 Vigna mungo HOM05D004955 ORTHO05D005965 7.2e-224 780.8 568 70.8
Glyma.07G096600 Glycine max HOM05D004955 ORTHO05D005965 1.8e-222 776.2 571 71.6
Medtr5g013970 Medicago truncatula HOM05D004955 ORTHO05D005965 1.2e-221 773.5 557 72.5
Lj2g0012431 Lotus japonicus HOM05D004955 ORTHO05D005965 5.7e-221 771.2 571 70.4
Nn1g00613 Nelumbo nucifera HOM05D004955 ORTHO05D005965 7.5e-221 770.8 559 72.6
Cpa.g.sc39.114 Carica papaya HOM05D004955 ORTHO05D005965 2.8e-220 768.8 559 71.4
CsaV3_1G038770 Cucumis sativus L. HOM05D004955 ORTHO05D005965 6.3e-220 767.7 561 71.7
Eucgr.D02153 Eucalyptus grandis HOM05D004955 ORTHO05D005965 1.4e-219 766.5 556 72.5
PGR031G1993 Punica granatum HOM05D004955 ORTHO05D005965 2.0e-218 762.7 554 71.8
Nitab4.5_0002055g0140 Nicotiana tabacum HOM05D004955 ORTHO05D005965 2.2e-217 759.2 559 71.0
MELO3C015301.2 Cucumis melo HOM05D004955 ORTHO05D005965 2.9e-217 758.8 561 71.5
vmacro00352 Vaccinium macrocarpon HOM05D004955 ORTHO05D005965 6.5e-217 757.7 558 71.3
Sopen08g025850 Solanum pennellii HOM05D004955 ORTHO05D005965 8.5e-217 757.3 559 70.7
Phvul.002G003600 Phaseolus vulgaris HOM05D004955 ORTHO05D005965 1.9e-216 756.1 565 69.9
Peaxi162Scf00084g00922 Petunia axillaris HOM05D004955 ORTHO05D005965 2.5e-216 755.7 568 69.0
Sc07g0008830 Simmondsia chinensis HOM05D004955 ORTHO05D005965 2.5e-216 755.7 571 68.7
CANSAT80G1132 Cannabis sativa HOM05D004955 ORTHO05D005965 3.2e-216 755.4 571 70.6
EL10Ac5g12196 Beta vulgaris HOM05D004955 ORTHO05D005965 1.2e-215 753.4 559 69.6
Solyc08g077270.4 Solanum lycopersicum HOM05D004955 ORTHO05D005965 1.2e-215 753.4 559 70.3
MBI04_g44837_MAGBIO Magnolia biondii HOM05D004955 ORTHO05D005965 8.0e-215 750.7 580 69.3
MSTRG.1970 Avicennia marina HOM05D004955 ORTHO05D005965 3.0e-214 748.8 559 69.4
CAN.G799.17 Capsicum annuum HOM05D004955 ORTHO05D005965 3.0e-214 748.8 559 69.8
Cc05_g03300 Coffea canephora HOM05D004955 ORTHO05D005965 6.8e-214 747.7 569 69.1
SalBow6G1446 Salvia bowleyana HOM05D004955 ORTHO05D005965 1.5e-213 746.5 559 67.8
PSO063G1154 Papaver somniferum HOM05D004955 ORTHO05D005965 1.3e-212 743.4 559 69.2
Haze_07894 Corylus avellana HOM05D004955 ORTHO05D005965 3.7e-212 741.9 571 69.0
PSO017G5366 Papaver somniferum HOM05D004955 ORTHO05D005965 1.1e-211 740.3 559 68.9
THA.LOC104814429 Tarenaya hassleriana HOM05D004955 ORTHO05D005965 1.4e-211 740.0 572 67.1
Aqoxy3G03106 Aquilegia oxysepala HOM05D004955 ORTHO05D005965 2.4e-211 739.2 588 66.3
Hund14430 Selenicereus undatus HOM05D004955 ORTHO05D005965 7.0e-211 737.6 569 69.4
Migut.E00912 Erythranthe guttata HOM05D004955 ORTHO05D005965 5.9e-210 734.6 563 68.7
Sed0006321 Sechium edule HOM05D004955 ORTHO05D005965 7.7e-210 734.2 557 69.7
Migut.E00798 Erythranthe guttata HOM05D004955 ORTHO05D005965 1.3e-209 733.4 563 68.6
Aa31LG9G15390 Aethionema arabicum HOM05D004955 ORTHO05D005965 2.9e-209 732.3 570 67.4
Oeu039341.2 Olea europaea HOM05D004955 ORTHO05D005965 3.8e-209 731.9 583 66.7
HanXRQChr14g0455871 Helianthus annuus HOM05D004955 ORTHO05D005965 6.6e-209 731.1 559 69.4
PSO541G5086 Papaver somniferum HOM05D004955 ORTHO05D005965 4.2e-208 728.4 559 67.8
Nitab4.5_0006693g0050 Nicotiana tabacum HOM05D004955 ORTHO05D005965 4.7e-207 724.9 537 70.9
CARHR195050 Cardamine hirsuta HOM05D004955 ORTHO05D005965 4.0e-206 721.8 567 67.0
Lalb_Chr16g0379231 Lupinus albus HOM05D004955 ORTHO05D005965 4.0e-206 721.8 518 72.4
Manes.15G172800 Manihot esculenta HOM05D004955 ORTHO05D005965 8.9e-206 720.7 508 72.4
AUR62018770 Chenopodium quinoa HOM05D004955 ORTHO05D005965 5.7e-205 718.0 559 68.5
AUR62007230 Chenopodium quinoa HOM05D004955 ORTHO05D005965 1.7e-204 716.5 556 68.7
Lsat_1_v5_gn_6_66461 Lactuca sativa HOM05D004955 ORTHO05D005965 1.4e-203 713.4 561 68.1
AL6G29260 Arabidopsis lyrata HOM05D004955 ORTHO05D005965 2.4e-203 712.6 567 65.8
Carub.0006s1636 Capsella rubella HOM05D004955 ORTHO05D005965 4.1e-203 711.8 570 65.8
Sp6g26230 Schrenkiella parvula HOM05D004955 ORTHO05D005965 5.9e-202 708.0 573 65.3
MBI04_g29834_MAGBIO Magnolia biondii HOM05D004955 ORTHO05D005965 1.0e-201 707.2 568 67.8
Thhalv10013080m.g Eutrema salsugineum HOM05D004955 ORTHO05D005965 2.9e-201 705.7 569 65.4
AT5G18070 Arabidopsis thaliana HOM05D004955 ORTHO05D005965 1.5e-200 703.4 568 64.6
CSS0006893 Camellia sinensis var. sinensis HOM05D004955 ORTHO05D005965 1.9e-200 703.0 514 70.8
Actinidia25945 Actinidia chinensis HOM05D004955 ORTHO05D005965 5.6e-200 701.4 562 66.5
ClCG03G017340 Citrullus lanatus HOM05D004955 ORTHO05D005965 7.3e-200 701.0 560 66.4
ATR0829G014 Amborella trichopoda HOM05D004955 ORTHO05D005965 2.8e-199 699.1 558 65.1
AUR62001104 Chenopodium quinoa HOM05D004955 ORTHO05D005965 8.0e-199 697.6 561 66.7
HPP92_017500 Vanilla planifolia HOM05D004955 ORTHO05D005965 2.6e-197 692.6 558 64.7
C09p58920 Brassica napus HOM05D004955 ORTHO05D005965 3.4e-197 692.2 566 62.7
BraA10t44206Z Brassica rapa HOM05D004955 ORTHO05D005965 1.7e-196 689.9 566 62.9
ECA233G2813 Erigeron canadensis HOM05D004955 ORTHO05D005965 2.9e-196 689.1 556 65.8
PGSC0003DMG400024224 Solanum tuberosum HOM05D004955 ORTHO05D005965 1.1e-195 687.2 517 69.4
BcaC04g18728 Brassica carinata HOM05D004955 ORTHO05D005965 2.7e-194 682.6 566 62.2
A10p21440 Brassica napus HOM05D004955 ORTHO05D005965 1.7e-193 679.9 567 62.3
BolC9t58736H Brassica oleracea HOM05D004955 ORTHO05D005965 3.0e-193 679.1 566 62.2
A03p08630 Brassica napus HOM05D004955 ORTHO05D005965 5.8e-189 664.8 566 62.9
C03p10070 Brassica napus HOM05D004955 ORTHO05D005965 4.9e-188 661.8 567 61.9
BraA03t10187Z Brassica rapa HOM05D004955 ORTHO05D005965 4.1e-187 658.7 567 61.6
SGA_v2.0_scaffold18G08384 Striga asiatica HOM05D004955 ORTHO05D005965 7.1e-187 657.9 516 66.5
BcaB01g05173 Brassica carinata HOM05D004955 ORTHO05D005965 7.8e-186 654.4 568 61.6
BolC3t13493H Brassica oleracea HOM05D004955 ORTHO05D005965 7.8e-186 654.4 568 61.6
Os07g0195400 Oryza sativa ssp. japonica HOM05D004955 ORTHO05D005965 4.7e-183 645.2 557 59.1
SEGI_00537 Sequoiadendron giganteum HOM05D004955 ORTHO05D005965 1.1e-182 644.0 557 61.9
Zm00001eb119880 Zea mays HOM05D004955 ORTHO05D005965 1.9e-179 633.3 560 59.6
Haze_08303 Corylus avellana HOM05D004955 ORTHO05D005965 1.0e-177 627.5 446 72.9
unitig_21.g20378 Utricularia gibba HOM05D004955 ORTHO05D005965 3.3e-176 622.5 546 62.6
BcaB08g36711 Brassica carinata HOM05D004955 ORTHO05D005965 1.3e-169 600.5 569 57.3
SHI01417 Sapria himalayana HOM05D004955 ORTHO05D005965 2.6e-165 586.3 466 66.3
Haze_08299 Corylus avellana HOM05D004955 ORTHO05D005965 5.4e-163 578.6 507 61.7
Pp3c15_140 Physcomitrium patens HOM05D004955 ORTHO05D005965 2.4e-155 553.1 573 53.2
Dinv25184 Davidia involucrata HOM05D004955 ORTHO05D005965 7.6e-149 531.6 417 68.8
AagrBONN_evm.TU.Sc2ySwM_362.507 Anthoceros agrestis HOM05D004955 ORTHO05D005965 1.6e-146 523.9 566 52.3
SGA_v2.0_scaffold157G37418 Striga asiatica HOM05D004955 ORTHO05D005965 6.7e-145 518.5 467 60.0
SMO174G0171 Selaginella moellendorffii HOM05D004955 ORTHO05D005965 7.4e-144 515.0 560 49.8
Atru.chr6.1775 Acer truncatum HOM05D004955 ORTHO05D005965 1.3e-143 514.2 381 71.4
Mapoly0074s0077 Marchantia polymorpha HOM05D004955 ORTHO05D005965 3.1e-142 509.6 569 50.8
CBR_g36832 Chara braunii HOM05D004955 ORTHO05D005965 5.8e-141 505.4 590 49.3
CDE08G0647 Ceratophyllum demersum HOM05D004955 ORTHO05D005965 4.6e-138 495.7 404 63.4
Haze_08304 Corylus avellana HOM05D004955 ORTHO05D005965 3.9e-129 466.1 433 60.3
Glyma.01G201400 Glycine max HOM05D004955 ORTHO05D005965 8.0e-114 415.2 315 70.2
PRCOL_00000375 Prasinoderma coloniale HOM05D004955 ORTHO05D005965 1.7e-108 397.5 550 44.4
MCO08G085 Micromonas commoda HOM05D004955 ORTHO05D005965 5.4e-102 375.9 578 40.7
TPR.G6765 Trifolium pratense HOM05D004955 ORTHO05D005965 5.4e-102 375.9 569 44.3
Nn3g19414 Nelumbo nucifera HOM05D004955 ORTHO05D005965 3.5e-101 373.2 259 73.4
Cre08.g379700 Chlamydomonas reinhardtii HOM05D004955 ORTHO05D005965 3.2e-99 366.7 566 42.4
Glyma.16G093333 Glycine max HOM05D004955 ORTHO05D005965 5.4e-78 296.2 206 72.3
Actinidia03393 Actinidia chinensis HOM05D004955 ORTHO05D005965 1.1e-70 271.9 508 37.8
MD09G1284100 Malus domestica HOM05D004955 ORTHO05D005965 7.1e-70 269.2 394 45.9
Haze_26496 Corylus avellana HOM05D004955 ORTHO05D005965 6.9e-49 199.5 283 42.0
Glyma.16G093267 Glycine max HOM05D004955 ORTHO05D005965 8.7e-44 182.6 130 72.3
Haze_08302 Corylus avellana HOM05D004955 ORTHO05D005965 2.0e-40 171.4 198 53.5
Glyma.01G201300 Glycine max HOM05D004955 ORTHO05D005965 3.8e-39 167.2 122 72.1
BcaB01g01790 Brassica carinata HOM05D004955 ORTHO05D005965 7.1e-38 162.9 149 55.0
SEGI_27182 Sequoiadendron giganteum HOM05D004955 ORTHO05D005965 2.5e-35 154.5 309 36.6
Cc05_g03290 Coffea canephora HOM05D004955 ORTHO05D005965 1.2e-32 145.6 103 67.0
vmacro21667 Vaccinium macrocarpon HOM05D004955 ORTHO05D005965 3.8e-31 140.6 88 81.8
BcaB01g06395 Brassica carinata HOM05D004955 ORTHO05D005965 5.5e-30 136.7 103 68.9
SHI01420 Sapria himalayana HOM05D004955 ORTHO05D000023 1.8e-28 131.7 106 64.2
Glyma.16G093100 Glycine max HOM05D004955 ORTHO05D005965 6.5e-23 113.2 81 72.8
CARHR185470 Cardamine hirsuta HOM05D004955 ORTHO05D005965 1.9e-22 111.7 85 64.7
SEGI_19301 Sequoiadendron giganteum HOM05D005396 ORTHO05D006400 1.2e-21 109.0 184 40.8
ATR0149G020 Amborella trichopoda HOM05D004955 ORTHO05D005965 1.5e-19 102.1 87 60.9
Ah.04g153990 Amaranthus hybridus HOM05D004955 ORTHO05D005965 1.3e-18 99.0 203 35.0
Haze_08300 Corylus avellana HOM05D004955 ORTHO05D005965 3.1e-17 94.4 88 59.1
SEGI_05540 Sequoiadendron giganteum HOM05D004955 ORTHO05D005965 7.7e-16 89.7 73 60.3


User provided reference genes

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