Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G2231 Fragaria x ananassa HOM05D005008 ORTHO05D006092 2.8e-70 268.5 131 100.0
FAN13G1722 Fragaria x ananassa HOM05D005008 ORTHO05D006092 1.4e-69 266.2 130 99.2
FAN08G1342 Fragaria x ananassa HOM05D005008 ORTHO05D006092 4.0e-69 264.6 130 98.5
FAN18G0191 Fragaria x ananassa HOM05D005008 ORTHO05D006092 2.0e-68 262.3 130 96.9
RcHm_v2.0_Chr5g0049161 Rosa chinensis HOM05D005008 ORTHO05D006092 4.7e-62 241.1 129 87.6
RcHm_v2.0_Chr7g0230441 Rosa chinensis HOM05D005008 ORTHO05D006092 2.3e-61 238.8 129 89.9
MD11G1175100 Malus domestica HOM05D005008 ORTHO05D006092 1.9e-55 219.2 129 79.1
Manes.11G103800 Manihot esculenta HOM05D005008 ORTHO05D006092 9.5e-55 216.9 129 77.5
Prupe.6G148300 Prunus persica HOM05D005008 ORTHO05D006092 2.8e-54 215.3 129 78.3
MD03G1160100 Malus domestica HOM05D005008 ORTHO05D006092 2.3e-53 212.2 129 75.2
Cc01_g07910 Coffea canephora HOM05D005008 ORTHO05D006092 4.0e-53 211.5 129 75.2
Dinv21730 Davidia involucrata HOM05D005008 ORTHO05D006092 8.9e-53 210.3 130 77.7
PGR083G2197 Punica granatum HOM05D005008 ORTHO05D006092 1.2e-52 209.9 128 75.8
CiPaw.13G126400 Carya illinoinensis HOM05D005008 ORTHO05D006092 2.0e-52 209.1 129 75.2
Nitab4.5_0015902g0010 Nicotiana tabacum HOM05D005008 ORTHO05D006092 2.6e-52 208.8 129 75.2
Eucgr.J00592 Eucalyptus grandis HOM05D005008 ORTHO05D006092 3.4e-52 208.4 128 75.0
Nitab4.5_0003644g0030 Nicotiana tabacum HOM05D005008 ORTHO05D006092 5.8e-52 207.6 129 74.4
CsaV3_1G043620 Cucumis sativus L. HOM05D005008 ORTHO05D006092 1.3e-51 206.5 129 74.4
TPR.G38259 Trifolium pratense HOM05D005008 ORTHO05D006092 1.7e-51 206.1 129 72.9
Dinv18863 Davidia involucrata HOM05D005008 ORTHO05D006092 2.9e-51 205.3 129 74.4
VMungo0251G1441 Vigna mungo HOM05D005008 ORTHO05D006092 2.9e-51 205.3 128 71.9
MELO3C015091.2 Cucumis melo HOM05D005008 ORTHO05D006092 3.7e-51 204.9 129 73.6
Psat7g129160 Pisum sativum HOM05D005008 ORTHO05D006092 3.7e-51 204.9 129 72.1
Nitab4.5_0002426g0070 Nicotiana tabacum HOM05D005008 ORTHO05D006092 4.9e-51 204.5 129 73.6
PGSC0003DMG400005906 Solanum tuberosum HOM05D005008 ORTHO05D006092 6.4e-51 204.1 129 72.9
Solyc11g071790.2 Solanum lycopersicum HOM05D005008 ORTHO05D006092 8.4e-51 203.8 129 72.1
Sopen11g029460 Solanum pennellii HOM05D005008 ORTHO05D006092 1.4e-50 203.0 129 72.1
CAN.G1463.18 Capsicum annuum HOM05D005008 ORTHO05D006092 1.9e-50 202.6 129 72.1
Glyma.20G018300 Glycine max HOM05D005008 ORTHO05D006092 1.9e-50 202.6 128 70.3
Solyc06g073900.3 Solanum lycopersicum HOM05D005008 ORTHO05D006092 1.9e-50 202.6 129 72.1
Sopen06g030300 Solanum pennellii HOM05D005008 ORTHO05D006092 1.9e-50 202.6 129 72.1
A06p05480 Brassica napus HOM05D005008 ORTHO05D006092 2.4e-50 202.2 130 70.8
Phvul.002G096700 Phaseolus vulgaris HOM05D005008 ORTHO05D006092 2.4e-50 202.2 128 71.1
Sabra09G0000700 Salix brachista HOM05D005008 ORTHO05D006092 3.2e-50 201.8 127 70.1
Ciclev10029485m.g Citrus clementina HOM05D005008 ORTHO05D006092 4.1e-50 201.4 127 73.2
Sp1g07130 Schrenkiella parvula HOM05D005008 ORTHO05D006092 4.1e-50 201.4 129 70.5
PGSC0003DMG400002990 Solanum tuberosum HOM05D005008 ORTHO05D006092 4.1e-50 201.4 129 71.3
BraA06t23756Z Brassica rapa HOM05D005008 ORTHO05D006092 5.4e-50 201.1 130 70.0
Cfa010212 Carpinus fangiana HOM05D005008 ORTHO05D006092 5.4e-50 201.1 128 74.2
THA.LOC104808952 Tarenaya hassleriana HOM05D005008 ORTHO05D006092 5.4e-50 201.1 130 73.1
Ca_18750_v3 Cicer arietinum L. HOM05D005008 ORTHO05D006092 7.1e-50 200.7 129 70.5
Peaxi162Scf00098g00148 Petunia axillaris HOM05D005008 ORTHO05D006092 7.1e-50 200.7 129 71.3
CARHR008370 Cardamine hirsuta HOM05D005008 ORTHO05D006092 9.2e-50 200.3 129 70.5
Rhsim13G0198500 Rhododendron simsii HOM05D005008 ORTHO05D006092 9.2e-50 200.3 127 74.0
Nitab4.5_0005569g0020 Nicotiana tabacum HOM05D005008 ORTHO05D006092 1.2e-49 199.9 129 71.3
TPR.G27448 Trifolium pratense HOM05D005008 ORTHO05D006092 2.1e-49 199.1 129 69.0
Peaxi162Scf00717g00217 Petunia axillaris HOM05D005008 ORTHO05D006092 2.7e-49 198.7 129 70.5
Potri.009G001100 Populus trichocarpa HOM05D005008 ORTHO05D006092 2.7e-49 198.7 127 69.3
AT1G08480 Arabidopsis thaliana HOM05D005008 ORTHO05D006092 3.5e-49 198.4 130 68.5
Carub.0001s0784 Capsella rubella HOM05D005008 ORTHO05D006092 4.6e-49 198.0 129 68.2
A08p35120 Brassica napus HOM05D005008 ORTHO05D006092 6.0e-49 197.6 129 68.2
Thhalv10019305m.g Eutrema salsugineum HOM05D005008 ORTHO05D006092 6.0e-49 197.6 129 68.2
Duzib170G0524 Durio zibethinus HOM05D005008 ORTHO05D006092 1.0e-48 196.8 129 71.3
Hund18808 Selenicereus undatus HOM05D005008 ORTHO05D006092 1.3e-48 196.4 130 71.5
arahy.Tifrunner.gnm1.ann1.LRUS99 Arachis hypogaea HOM05D005008 ORTHO05D006092 1.7e-48 196.1 129 70.5
BcaB03g13330 Brassica carinata HOM05D005008 ORTHO05D006092 1.7e-48 196.1 129 67.4
BraA08t35421Z Brassica rapa HOM05D005008 ORTHO05D006092 1.7e-48 196.1 129 67.4
ClCG03G012390 Citrullus lanatus HOM05D005008 ORTHO05D006092 1.7e-48 196.1 129 70.5
Medtr4g084320 Medicago truncatula HOM05D005008 ORTHO05D006092 2.3e-48 195.7 129 69.8
Atru.chr3.3067 Acer truncatum HOM05D005008 ORTHO05D006092 3.0e-48 195.3 130 68.5
Sc21g0006720 Simmondsia chinensis HOM05D005008 ORTHO05D006092 3.0e-48 195.3 129 70.5
Lalb_Chr16g0385131 Lupinus albus HOM05D005008 ORTHO05D006092 3.9e-48 194.9 129 66.7
BcaB07g34092 Brassica carinata HOM05D005008 ORTHO05D006092 5.1e-48 194.5 130 67.7
C05p06590 Brassica napus HOM05D005008 ORTHO05D006092 5.1e-48 194.5 130 67.7
BolC5t29419H Brassica oleracea HOM05D005008 ORTHO05D006092 5.1e-48 194.5 130 67.7
Aa31LG5G14080 Aethionema arabicum HOM05D005008 ORTHO05D006092 8.6e-48 193.7 129 67.4
BcaC07g38394 Brassica carinata HOM05D005008 ORTHO05D006092 8.6e-48 193.7 128 67.2
C08p11520 Brassica napus HOM05D005008 ORTHO05D006092 8.6e-48 193.7 128 67.2
BolC8t48832H Brassica oleracea HOM05D005008 ORTHO05D006092 8.6e-48 193.7 128 67.2
Lj2E351T1 Lonicera japonica HOM05D005008 ORTHO05D006092 8.6e-48 193.7 121 74.4
THA.LOC104815294 Tarenaya hassleriana HOM05D005008 ORTHO05D006092 8.6e-48 193.7 129 69.0
Duzib168G2291 Durio zibethinus HOM05D005008 ORTHO05D006092 1.5e-47 193.0 129 69.0
Aa31LG2G20300 Aethionema arabicum HOM05D005008 ORTHO05D006092 2.5e-47 192.2 130 66.2
arahy.Tifrunner.gnm1.ann1.0IE2SQ Arachis hypogaea HOM05D005008 ORTHO05D006092 3.3e-47 191.8 129 69.8
EL10Ac7g16268 Beta vulgaris HOM05D005008 ORTHO05D006092 4.3e-47 191.4 129 66.7
GSVIVG01028464001 Vitis vinifera HOM05D005008 ORTHO05D006092 4.3e-47 191.4 127 69.3
Lj2g0024950 Lotus japonicus HOM05D005008 ORTHO05D006092 5.6e-47 191.0 129 67.4
AUR62001577 Chenopodium quinoa HOM05D005008 ORTHO05D006092 7.3e-47 190.7 129 69.0
AL1G18910 Arabidopsis lyrata HOM05D005008 ORTHO05D006092 1.2e-46 189.9 147 61.2
CSS0002518 Camellia sinensis var. sinensis HOM05D005008 ORTHO05D006092 1.2e-46 189.9 126 71.4
Sed0018780 Sechium edule HOM05D005008 ORTHO05D006092 1.2e-46 189.9 129 68.2
Gohir.D08G017500 Gossypium hirsutum HOM05D005008 ORTHO05D006092 1.6e-46 189.5 126 67.5
Gorai.004G011900 Gossypium raimondii HOM05D005008 ORTHO05D006092 1.6e-46 189.5 126 67.5
TWI31G0222 Tripterygium wilfordii HOM05D005008 ORTHO05D006092 1.6e-46 189.5 127 68.5
Gohir.A08G007400 Gossypium hirsutum HOM05D005008 ORTHO05D006092 2.1e-46 189.1 126 67.5
Lalb_Chr05g0219631 Lupinus albus HOM05D005008 ORTHO05D006092 2.8e-46 188.7 128 64.8
Aqoxy7G02777 Aquilegia oxysepala HOM05D005008 ORTHO05D006092 6.2e-46 187.6 130 70.8
Thecc.09G268300 Theobroma cacao HOM05D005008 ORTHO05D006092 1.4e-45 186.4 129 65.9
Sc12g0000410 Simmondsia chinensis HOM05D005008 ORTHO05D006092 1.8e-45 186.0 130 66.2
Hma1.2p1_0101F.1_g049710 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 3.1e-45 185.3 128 67.2
Lsat_1_v5_gn_6_104840 Lactuca sativa HOM05D005008 ORTHO05D006092 6.8e-45 184.1 128 66.4
ATR1136G073 Amborella trichopoda HOM05D005008 ORTHO05D006092 3.4e-44 181.8 125 68.0
vmacro04058 Vaccinium macrocarpon HOM05D005008 ORTHO05D006092 4.4e-44 181.4 127 69.3
TAR628G1298 Trochodendron aralioides HOM05D005008 ORTHO05D006092 6.4e-43 177.6 125 66.4
unitig_899.g15386 Utricularia gibba HOM05D005008 ORTHO05D006092 8.4e-43 177.2 128 66.4
unitig_746.g26601 Utricularia gibba HOM05D005008 ORTHO05D006092 1.9e-42 176.0 128 65.6
QL02p021765 Quercus lobata HOM05D005008 ORTHO05D006092 2.4e-42 175.6 199 48.2
arahy.Tifrunner.gnm1.ann1.L1LZAQ Arachis hypogaea HOM05D005008 ORTHO05D006092 7.1e-42 174.1 118 68.6
ECA246G4934 Erigeron canadensis HOM05D005008 ORTHO05D006092 1.2e-41 173.3 121 65.3
HanXRQChr05g0163331 Helianthus annuus HOM05D005008 ORTHO05D006092 1.6e-41 172.9 129 60.5
MBI17_g21974_MAGBIO Magnolia biondii HOM05D005008 ORTHO05D006092 6.0e-41 171.0 127 63.0
Oeu031444.1 Olea europaea HOM05D005008 ORTHO05D006092 2.3e-40 169.1 128 61.7
MSTRG.18800 Avicennia marina HOM05D005008 ORTHO05D006092 8.7e-40 167.2 128 60.9
MSTRG.21002 Avicennia marina HOM05D005008 ORTHO05D006092 2.5e-39 165.6 128 61.7
arahy.Tifrunner.gnm1.ann1.67HGNM Arachis hypogaea HOM05D005008 ORTHO05D006092 7.3e-39 164.1 110 69.1
COL.COLO4_25364 Corchorus olitorius HOM05D005008 ORTHO05D006092 7.3e-39 164.1 125 64.8
FvH4_5g32770 Fragaria vesca HOM05D005008 ORTHO05D006092 7.3e-39 164.1 82 98.8
MBI17_g21976_MAGBIO Magnolia biondii HOM05D000527 ORTHO05D000559 9.6e-39 163.7 122 64.8
DCAR_021985 Daucus carota HOM05D005008 ORTHO05D006092 2.1e-38 162.5 126 64.3
Migut.D02371 Erythranthe guttata HOM05D005008 ORTHO05D006092 6.2e-38 161.0 128 57.8
Migut.D02374 Erythranthe guttata HOM05D005008 ORTHO05D006092 6.2e-38 161.0 128 57.8
SEGI_09212 Sequoiadendron giganteum HOM05D005008 ORTHO05D006092 1.5e-36 156.4 128 56.2
CDE05G0523 Ceratophyllum demersum HOM05D005008 ORTHO05D006092 5.8e-36 154.5 129 55.8
CDE04G3167 Ceratophyllum demersum HOM05D005008 ORTHO05D006092 9.9e-36 153.7 129 55.0
Ah.01g003330 Amaranthus hybridus HOM05D005008 ORTHO05D006092 2.9e-35 152.1 211 40.3
SGA_v2.0_scaffold114G31950 Striga asiatica HOM05D005008 ORTHO05D006092 1.9e-34 149.4 128 56.2
PSO325G0018 Papaver somniferum HOM05D005008 ORTHO05D006092 2.3e-32 142.5 127 56.7
PSO144G0132 Papaver somniferum HOM05D005008 ORTHO05D006092 6.6e-32 141.0 126 56.3
Haze_23598 Corylus avellana HOM05D005008 ORTHO05D006092 7.4e-31 137.5 97 68.0
PSO478G0762 Papaver somniferum HOM05D005008 ORTHO05D006092 2.4e-29 132.5 120 53.3
PSO017G3706 Papaver somniferum HOM05D005008 ORTHO05D006092 6.9e-29 131.0 120 53.3
Nn1g08680 Nelumbo nucifera HOM05D005008 ORTHO05D006092 9.0e-29 130.6 81 76.5
PSO017G4122 Papaver somniferum HOM05D005008 ORTHO05D006092 2.6e-28 129.0 120 52.5
Os08g0112800 Oryza sativa ssp. japonica HOM05D005008 ORTHO05D006092 1.7e-27 126.3 127 46.5
Zm00001eb173990 Zea mays HOM05D005008 ORTHO05D006092 8.4e-27 124.0 127 46.5
Zm00001eb260600 Zea mays HOM05D005008 ORTHO05D006092 1.1e-26 123.6 127 45.7
Atru.chr5.2770 Acer truncatum HOM05D005008 ORTHO05D006092 3.2e-26 122.1 85 69.4
HPP92_002034 Vanilla planifolia HOM05D005008 ORTHO05D006092 2.1e-25 119.4 126 44.4
PSO339G0217 Papaver somniferum HOM05D005008 ORTHO05D006092 3.5e-25 118.6 109 53.2
Sed0017043 Sechium edule HOM05D005008 ORTHO05D006092 6.0e-25 117.9 82 68.3
AUR62020205 Chenopodium quinoa HOM05D005008 ORTHO05D006092 3.0e-24 115.5 81 65.4
Mapoly0024s0049 Marchantia polymorpha HOM05D005008 ORTHO05D006092 1.9e-23 112.8 110 48.2
Pp3c1_6020 Physcomitrium patens HOM05D005008 ORTHO05D006092 3.7e-22 108.6 107 46.7
PSO541G3575 Papaver somniferum HOM05D005008 ORTHO05D006092 1.8e-21 106.3 95 53.7
Pp3c7_24330 Physcomitrium patens HOM05D005008 ORTHO05D006092 2.4e-21 105.9 106 46.2
SalBow6G2115 Salvia bowleyana HOM05D005008 ORTHO05D006092 4.5e-20 101.7 162 37.0
BcaB07g32561 Brassica carinata HOM05D005008 ORTHO05D006092 1.9e-18 96.3 85 54.1
CBR_g29511 Chara braunii HOM05D005008 ORTHO05D006092 3.9e-16 88.6 113 37.2
CBR_g36250 Chara braunii HOM05D005008 ORTHO05D006092 4.8e-14 81.6 123 32.5
SMO364G0346 Selaginella moellendorffii HOM05D005008 ORTHO05D006092 4.1e-13 78.6 109 36.7
PSO447G0120 Papaver somniferum HOM05D005008 ORTHO05D006092 1.7e-11 73.2 86 43.0
TPR.G18466 Trifolium pratense HOM05D005008 ORTHO05D006092 5.0e-11 71.6 46 65.2
FAN11G1746 Fragaria x ananassa HOM05D005008 ORTHO05D207435 1.8e-08 63.2 31 87.1
FvH4_3g26740 Fragaria vesca HOM05D005008 ORTHO05D006092 5.7e-07 58.2 41 63.4
Oeu026671.1 Olea europaea HOM05D005008 ORTHO05D006092 2.2e-06 56.2 36 69.4
Hma1.2p1_1258F.1_g270900 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 4.8e-06 55.1 42 54.8
Hma1.2p1_1951F.1_g308770 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 4.8e-06 55.1 42 54.8


User provided reference genes

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