Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G2218 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 2055.8 1050 100.0
FAN18G1967 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1975.3 1056 95.5
FvH4_5g36450 Fragaria vesca HOM05D001026 ORTHO05D005232 0.0e+00 1970.7 1050 95.3
FAN08G3634 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1961.4 1056 94.8
FAN13G1430 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1948.7 1050 94.8
RcHm_v2.0_Chr7g0238491 Rosa chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1841.2 1050 88.9
Prupe.1G523400 Prunus persica HOM05D001026 ORTHO05D005232 0.0e+00 1735.3 1048 83.8
MD08G1188800 Malus domestica HOM05D001026 ORTHO05D005232 0.0e+00 1698.3 1051 81.8
CiPaw.15G045700 Carya illinoinensis HOM05D001026 ORTHO05D005232 0.0e+00 1593.9 1041 76.8
QL02p002343 Quercus lobata HOM05D001026 ORTHO05D005232 0.0e+00 1582.4 1042 76.7
TAR381G1087 Trochodendron aralioides HOM05D001026 ORTHO05D005232 0.0e+00 1562.0 1050 75.6
TWI56G0493 Tripterygium wilfordii HOM05D001026 ORTHO05D005232 0.0e+00 1541.9 1042 75.5
Cfa017894 Carpinus fangiana HOM05D001026 ORTHO05D005232 0.0e+00 1526.1 999 76.8
Atru.chr13.1116 Acer truncatum HOM05D001026 ORTHO05D005232 0.0e+00 1523.5 1046 73.7
Ciclev10000130m.g Citrus clementina HOM05D001026 ORTHO05D005232 0.0e+00 1523.1 1057 73.2
Potri.002G100800 Populus trichocarpa HOM05D001026 ORTHO05D005232 0.0e+00 1522.3 1043 73.8
Lj6g0009212 Lotus japonicus HOM05D001026 ORTHO05D005232 0.0e+00 1513.4 1044 73.8
Eucgr.B00041 Eucalyptus grandis HOM05D001026 ORTHO05D005232 0.0e+00 1505.3 1042 73.8
vmacro21290 Vaccinium macrocarpon HOM05D001026 ORTHO05D005232 0.0e+00 1500.3 1046 73.2
Nn7g37838 Nelumbo nucifera HOM05D001026 ORTHO05D005232 0.0e+00 1500.0 1056 72.8
Medtr3g080120 Medicago truncatula HOM05D001026 ORTHO05D005232 0.0e+00 1498.4 1045 73.3
Manes.02G148900 Manihot esculenta HOM05D001026 ORTHO05D005232 0.0e+00 1496.5 1043 72.4
Manes.18G063378 Manihot esculenta HOM05D001026 ORTHO05D005232 0.0e+00 1491.1 1043 73.2
Sabra02G0079000 Salix brachista HOM05D001026 ORTHO05D005232 0.0e+00 1487.6 1043 72.3
Thecc.08G101700 Theobroma cacao HOM05D001026 ORTHO05D005232 0.0e+00 1485.7 1046 72.5
Ca_16276_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 0.0e+00 1484.5 1044 72.4
Rhsim06G0077700 Rhododendron simsii HOM05D001026 ORTHO05D005232 0.0e+00 1483.0 1051 71.9
Gohir.D03G121400 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1480.7 1048 71.6
Gorai.003G128400 Gossypium raimondii HOM05D001026 ORTHO05D005232 0.0e+00 1479.5 1048 71.5
Hma1.2p1_0593F.1_g185750 Hydrangea macrophylla HOM05D001026 ORTHO05D005232 0.0e+00 1479.2 1043 73.1
Gohir.A03G045800 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1478.8 1048 71.5
Duzib041G0801 Durio zibethinus HOM05D001026 ORTHO05D005232 0.0e+00 1476.5 1048 72.5
TPR.G34506 Trifolium pratense HOM05D001026 ORTHO05D005232 0.0e+00 1475.7 1047 72.7
COL.COLO4_12005 Corchorus olitorius HOM05D001026 ORTHO05D005232 0.0e+00 1472.6 1063 70.6
THA.LOC104816596 Tarenaya hassleriana HOM05D001026 ORTHO05D005232 0.0e+00 1465.3 1050 71.3
CANSAT64G2709 Cannabis sativa HOM05D001026 ORTHO05D005232 0.0e+00 1462.2 1052 72.6
Lalb_Chr18g0048141 Lupinus albus HOM05D001026 ORTHO05D005232 0.0e+00 1461.8 1045 71.9
Psat5g110840 Pisum sativum HOM05D001026 ORTHO05D005232 0.0e+00 1459.5 1046 71.7
Oeu029742.2 Olea europaea HOM05D001026 ORTHO05D005232 0.0e+00 1446.8 1042 70.5
Aqoxy6G00082 Aquilegia oxysepala HOM05D001026 ORTHO05D005232 0.0e+00 1443.3 1043 70.9
GSVIVG01009085001 Vitis vinifera HOM05D001026 ORTHO05D005232 0.0e+00 1443.3 1043 71.4
CsaV3_3G047720 Cucumis sativus L. HOM05D001026 ORTHO05D005232 0.0e+00 1441.4 1043 70.4
Cc10_g06660 Coffea canephora HOM05D001026 ORTHO05D005232 0.0e+00 1441.0 1041 70.4
Phvul.L003337 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1431.0 1052 70.0
MBI06_g22313_MAGBIO Magnolia biondii HOM05D001026 ORTHO05D005232 0.0e+00 1427.9 1091 67.9
Sed0011558 Sechium edule HOM05D001026 ORTHO05D005232 0.0e+00 1427.5 1044 69.8
Thhalv10006673m.g Eutrema salsugineum HOM05D001026 ORTHO05D005232 0.0e+00 1423.3 1046 69.6
Solyc04g074720.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 0.0e+00 1419.4 1036 69.7
Sp1g25380 Schrenkiella parvula HOM05D001026 ORTHO05D005232 0.0e+00 1418.7 1046 69.6
CAN.G1173.1 Capsicum annuum HOM05D001026 ORTHO05D005232 0.0e+00 1417.5 1042 69.4
PSO700G0312 Papaver somniferum HOM05D001026 ORTHO05D005232 0.0e+00 1416.7 1073 68.9
AT1G35220 Arabidopsis thaliana HOM05D001026 ORTHO05D005232 0.0e+00 1416.4 1047 69.9
Sopen04g029690 Solanum pennellii HOM05D001026 ORTHO05D005232 0.0e+00 1413.7 1036 69.2
BcaB03g13886 Brassica carinata HOM05D001026 ORTHO05D005232 0.0e+00 1411.0 1046 69.4
MSTRG.24986 Avicennia marina HOM05D001026 ORTHO05D005232 0.0e+00 1410.2 1053 68.9
PSO447G0261 Papaver somniferum HOM05D001026 ORTHO05D005232 0.0e+00 1410.2 1080 68.3
BcaC06g35430 Brassica carinata HOM05D001026 ORTHO05D005232 0.0e+00 1409.0 1045 69.4
Carub.0001s3287 Capsella rubella HOM05D001026 ORTHO05D005232 0.0e+00 1408.7 1046 69.4
Lalb_Chr17g0347341 Lupinus albus HOM05D001026 ORTHO05D005232 0.0e+00 1408.7 1044 68.8
AL1G49940 Arabidopsis lyrata HOM05D001026 ORTHO05D005232 0.0e+00 1407.5 1053 68.9
BraA07t28862Z Brassica rapa HOM05D001026 ORTHO05D005232 0.0e+00 1407.1 1045 69.4
ClCG11G014330 Citrullus lanatus HOM05D001026 ORTHO05D005232 0.0e+00 1406.0 1007 71.7
BolC7t42122H Brassica oleracea HOM05D001026 ORTHO05D005232 0.0e+00 1405.2 1045 69.3
C07p16280 Brassica napus HOM05D001026 ORTHO05D005232 0.0e+00 1404.8 1045 69.3
Glyma.13G027300 Glycine max HOM05D001026 ORTHO05D005232 0.0e+00 1404.8 1004 71.6
VMungo0540G1065 Vigna mungo HOM05D001026 ORTHO05D005232 0.0e+00 1402.5 1120 66.0
A07p10680 Brassica napus HOM05D001026 ORTHO05D005232 0.0e+00 1402.1 1045 69.2
Dinv07074 Davidia involucrata HOM05D001026 ORTHO05D005232 0.0e+00 1401.7 961 74.9
CARHR286320 Cardamine hirsuta HOM05D001026 ORTHO05D005232 0.0e+00 1399.8 1046 68.5
Nitab4.5_0005108g0010 Nicotiana tabacum HOM05D001026 ORTHO05D005232 0.0e+00 1398.3 1020 69.8
Sed0018981 Sechium edule HOM05D001026 ORTHO05D005232 0.0e+00 1398.3 1050 68.2
SGA_v2.0_scaffold74G24568 Striga asiatica HOM05D001026 ORTHO05D005232 0.0e+00 1398.3 1052 68.8
Peaxi162Scf00030g02517 Petunia axillaris HOM05D001026 ORTHO05D005232 0.0e+00 1396.7 1087 67.1
Aa31LG6G8880 Aethionema arabicum HOM05D001026 ORTHO05D005232 0.0e+00 1393.6 1044 68.7
SalBow7G3028 Salvia bowleyana HOM05D001026 ORTHO05D005232 0.0e+00 1388.6 1055 68.2
Sc01g0000810 Simmondsia chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1385.5 1068 68.2
Migut.C00225 Erythranthe guttata HOM05D001026 ORTHO05D005232 0.0e+00 1381.3 1046 68.5
Ah.05g169670 Amaranthus hybridus HOM05D001026 ORTHO05D005232 0.0e+00 1366.3 1058 66.4
Lj4C96G17 Lonicera japonica HOM05D001026 ORTHO05D005232 0.0e+00 1362.1 1040 68.2
DCAR_009580 Daucus carota HOM05D001026 ORTHO05D005232 0.0e+00 1355.5 1047 66.6
LjContig00564g0017936 Lotus japonicus HOM05D001026 ORTHO05D005232 0.0e+00 1354.3 1047 66.0
Medtr5g085880 Medicago truncatula HOM05D001026 ORTHO05D005232 0.0e+00 1352.8 1048 66.0
MELO3C003550.2 Cucumis melo HOM05D001026 ORTHO05D005232 0.0e+00 1352.4 1142 62.9
EL10Ac1g01144 Beta vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1345.5 1048 65.6
arahy.Tifrunner.gnm1.ann1.H5V4Y1 Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1341.3 1041 67.3
arahy.Tifrunner.gnm1.ann1.SJ0MJA Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1335.5 1042 67.5
Psat2g022120 Pisum sativum HOM05D001026 ORTHO05D005232 0.0e+00 1335.1 1052 64.5
Nitab4.5_0000786g0020 Nicotiana tabacum HOM05D001026 ORTHO05D005232 0.0e+00 1317.8 1020 66.7
Ca_06108_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 0.0e+00 1313.5 1047 64.7
Solyc12g057130.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 0.0e+00 1305.4 1044 66.0
AUR62018974 Chenopodium quinoa HOM05D001026 ORTHO05D005232 0.0e+00 1291.9 1061 64.6
HPP92_016948 Vanilla planifolia HOM05D001026 ORTHO05D005232 0.0e+00 1291.6 1058 63.4
ECA247G3686 Erigeron canadensis HOM05D001026 ORTHO05D005232 0.0e+00 1287.3 1048 64.7
TPR.G14449 Trifolium pratense HOM05D001026 ORTHO05D005232 0.0e+00 1285.4 1062 63.1
Gorai.010G037700 Gossypium raimondii HOM05D001026 ORTHO05D005232 0.0e+00 1276.9 1051 63.7
Lsat_1_v5_gn_1_3061 Lactuca sativa HOM05D001026 ORTHO05D005232 0.0e+00 1272.3 1051 64.0
HanXRQChr09g0248911 Helianthus annuus HOM05D001026 ORTHO05D005232 0.0e+00 1269.2 1050 63.1
ATR0684G075 Amborella trichopoda HOM05D001026 ORTHO05D005232 0.0e+00 1263.1 1023 64.2
MD15G1376700 Malus domestica HOM05D001026 ORTHO05D005232 0.0e+00 1263.1 849 76.8
Lsat_1_v5_gn_9_73921 Lactuca sativa HOM05D001026 ORTHO05D005232 0.0e+00 1256.5 1042 63.6
arahy.Tifrunner.gnm1.ann1.1274C3 Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1256.1 1176 56.9
Sopen12g029790 Solanum pennellii HOM05D001026 ORTHO05D005232 0.0e+00 1247.6 1001 66.0
arahy.Tifrunner.gnm1.ann1.Z84UIM Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1243.4 1209 55.5
ECA232G4443 Erigeron canadensis HOM05D001026 ORTHO05D005232 0.0e+00 1234.2 982 65.8
VMungo0647G2280 Vigna mungo HOM05D001026 ORTHO05D005232 0.0e+00 1227.2 1075 59.7
HanXRQChr12g0379801 Helianthus annuus HOM05D001026 ORTHO05D005232 0.0e+00 1224.9 1052 61.5
Hund16887 Selenicereus undatus HOM05D001026 ORTHO05D005232 0.0e+00 1217.2 1073 61.0
AUR62027815 Chenopodium quinoa HOM05D001026 ORTHO05D005232 0.0e+00 1216.1 1045 62.3
Gohir.D06G034200 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1215.3 956 66.4
CSS0035277 Camellia sinensis var. sinensis HOM05D001026 ORTHO05D005232 0.0e+00 1208.7 893 70.0
Glyma.02G270100 Glycine max HOM05D001026 ORTHO05D005232 0.0e+00 1208.7 1044 61.5
PGSC0003DMG400017755 Solanum tuberosum HOM05D001026 ORTHO05D005232 0.0e+00 1202.2 1043 62.7
Os01g0303200 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 0.0e+00 1199.9 1040 60.6
Zm00001eb288650 Zea mays HOM05D001026 ORTHO05D005232 0.0e+00 1181.8 1047 59.1
Os05g0355133 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 0.0e+00 1167.1 1049 57.9
Phvul.008G211900 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1160.6 1047 58.8
Actinidia30796 Actinidia chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1148.7 1026 60.9
unitig_46.g17923 Utricularia gibba HOM05D001026 ORTHO05D005232 0.0e+00 1107.4 944 62.8
Gohir.A06G033300 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1104.0 899 64.6
Zm00001eb130190 Zea mays HOM05D001026 ORTHO05D005232 0.0e+00 1098.2 972 60.1
CDE10G1069 Ceratophyllum demersum HOM05D001026 ORTHO05D005232 1.2e-301 1040.0 946 60.0
Hund26991 Selenicereus undatus HOM05D001026 ORTHO05D005232 7.4e-275 951.0 776 64.6
Haze_18258 Corylus avellana HOM05D001026 ORTHO05D005232 6.3e-274 948.0 618 77.2
Zm00001eb286080 Zea mays HOM05D001026 ORTHO05D005232 3.1e-273 945.7 908 56.4
Mapoly0104s0038 Marchantia polymorpha HOM05D001026 ORTHO05D005232 1.8e-265 919.8 1065 49.0
Dinv05859 Davidia involucrata HOM05D001026 ORTHO05D005232 8.0e-261 904.4 624 73.4
AagrBONN_evm.TU.Sc2ySwM_228.1520 Anthoceros agrestis HOM05D001026 ORTHO05D005232 3.1e-257 892.5 1089 47.0
SMO356G0157 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 1.0e-247 860.9 1020 47.1
Glyma.20G056500 Glycine max HOM05D001026 ORTHO05D005232 5.4e-241 838.6 640 68.1
Pp3c2_15510 Physcomitrium patens HOM05D001026 ORTHO05D005232 4.5e-232 808.9 1057 44.5
Pp3c1_27170 Physcomitrium patens HOM05D001026 ORTHO05D005232 5.9e-232 808.5 1061 44.8
Peaxi162Scf00571g00528 Petunia axillaris HOM05D001026 ORTHO05D005232 1.5e-230 803.9 626 66.1
CBR_g5699 Chara braunii HOM05D001026 ORTHO05D005232 4.9e-218 762.3 1256 40.3
SMO134G0184 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 3.2e-209 733.0 913 43.8
Glyma.20G056600 Glycine max HOM05D001026 ORTHO05D005232 2.4e-180 637.1 427 75.4
Dinv05858 Davidia involucrata HOM05D001026 ORTHO05D005232 8.4e-170 602.1 396 76.5
Manes.18G025208 Manihot esculenta HOM05D001026 ORTHO05D005232 3.3e-158 563.5 425 68.9
Psat0s5307g0040 Pisum sativum HOM05D001026 ORTHO05D005232 1.4e-153 548.1 479 62.2
Psat4g114320 Pisum sativum HOM05D001026 ORTHO05D005232 1.6e-152 544.7 507 60.6
SEGI_18178 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 2.8e-149 533.9 593 50.6
SHI20583 Sapria himalayana HOM05D001026 ORTHO05D005232 9.1e-140 502.3 547 52.5
Haze_18259 Corylus avellana HOM05D001026 ORTHO05D005232 5.2e-103 380.2 273 72.5
MD15G1376600 Malus domestica HOM05D001026 ORTHO05D005232 8.9e-103 379.4 205 85.4
arahy.Tifrunner.gnm1.ann1.WH8Y2A Arachis hypogaea HOM05D001026 ORTHO05D005232 2.6e-102 377.9 301 66.8
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 1.2e-96 359.0 315 61.6
Psat1g107360 Pisum sativum HOM05D001026 ORTHO05D005232 4.6e-83 313.9 233 71.2
SHI20581 Sapria himalayana HOM05D001026 ORTHO05D005232 8.7e-82 309.7 275 60.4
Cre10.g457150 Chlamydomonas reinhardtii HOM05D001026 ORTHO05D005232 4.0e-79 300.8 882 27.9
Haze_18261 Corylus avellana HOM05D001026 ORTHO05D005232 1.5e-78 298.9 162 84.6
Hund26990 Selenicereus undatus HOM05D001026 ORTHO05D005232 1.7e-74 285.4 150 87.3
Psat7g123360 Pisum sativum HOM05D002169 ORTHO05D006577 6.9e-63 246.9 219 58.4
Psat0s2339g0080 Pisum sativum HOM05D001026 ORTHO05D005232 2.1e-59 235.3 170 72.9
Psat0s3076g0120 Pisum sativum HOM05D003435 ORTHO05D004032 1.6e-56 225.7 329 45.9
QL02p059881 Quercus lobata HOM05D001026 ORTHO05D005232 1.1e-52 213.0 147 77.6
SHI20572 Sapria himalayana HOM05D001026 ORTHO05D005232 4.8e-48 197.6 114 77.2
PRCOL_00002948 Prasinoderma coloniale HOM05D001026 ORTHO05D005232 1.4e-42 179.5 527 29.4
Psat4g129920 Pisum sativum HOM05D003435 ORTHO05D004032 1.7e-40 172.6 198 50.5
Psat0s3521g0080 Pisum sativum HOM05D000555 ORTHO05D001906 3.7e-40 171.4 129 69.0
SEGI_27036 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 1.8e-39 169.1 90 80.0
Psat4g066520 Pisum sativum HOM05D001026 ORTHO05D007418 5.1e-34 151.0 131 61.1
Psat3g007920 Pisum sativum HOM05D001026 ORTHO05D005232 2.0e-33 149.1 186 45.2
SEGI_36321 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 8.2e-32 143.7 115 61.7
HPP92_016951 Vanilla planifolia HOM05D001026 ORTHO05D005232 1.7e-29 136.0 77 75.3
CDE10G0833 Ceratophyllum demersum HOM05D001026 ORTHO05D023993 1.8e-26 125.9 81 74.1
Psat3g111480 Pisum sativum HOM05D001026 ORTHO05D008599 6.7e-26 124.0 107 61.7
Psat0s1135g0080 Pisum sativum HOM05D001026 ORTHO05D005232 5.0e-21 107.8 104 53.8
BcaC05g26968 Brassica carinata HOM05D001026 ORTHO05D023993 6.1e-19 100.9 79 65.8
C05p28240 Brassica napus HOM05D001026 ORTHO05D023993 6.1e-19 100.9 79 65.8
BolC5t31548H Brassica oleracea HOM05D001026 ORTHO05D023993 6.1e-19 100.9 79 65.8
Psat0s3199g0080 Pisum sativum HOM05D000071 ORTHO05D022797 9.8e-17 93.6 86 64.0
Psat4g159480 Pisum sativum HOM05D002169 ORTHO05D006577 5.4e-15 87.8 78 52.6
SHI20575 Sapria himalayana HOM05D001026 ORTHO05D005232 1.6e-11 76.3 46 78.3
AagrBONN_evm.TU.Sc2ySwM_368.2118 Anthoceros agrestis HOM05D001026 ORTHO05D005232 1.4e-10 73.2 50 68.0
BcaB07g32536 Brassica carinata HOM05D001026 ORTHO05D023993 1.8e-10 72.8 79 54.4
Psat3g007840 Pisum sativum HOM05D001026 ORTHO05D005232 8.8e-10 70.5 65 53.8


User provided reference genes

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