Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G2180 Fragaria x ananassa HOM05D006466 ORTHO05D008084 5.2e-137 491.1 259 100.0
FAN18G0606 Fragaria x ananassa HOM05D006466 ORTHO05D008084 8.9e-113 410.6 232 96.1
FvH4_5g18710 Fragaria vesca HOM05D006466 ORTHO05D008084 2.6e-112 409.1 232 95.7
FAN13G1623 Fragaria x ananassa HOM05D006466 ORTHO05D008084 7.5e-104 380.9 229 88.6
RcHm_v2.0_Chr7g0203001 Rosa chinensis HOM05D006466 ORTHO05D008084 7.8e-101 370.9 239 86.6
FAN08G0853 Fragaria x ananassa HOM05D006466 ORTHO05D008084 7.3e-99 364.4 232 84.5
Cfa012739 Carpinus fangiana HOM05D006466 ORTHO05D008084 7.1e-70 268.1 237 67.1
TWI81G0148 Tripterygium wilfordii HOM05D006466 ORTHO05D008084 2.1e-69 266.5 242 66.9
Potri.001G123200 Populus trichocarpa HOM05D006466 ORTHO05D008084 7.9e-69 264.6 236 62.3
Thecc.03G253200 Theobroma cacao HOM05D006466 ORTHO05D008084 1.8e-68 263.5 233 65.2
Haze_07889 Corylus avellana HOM05D006466 ORTHO05D008084 3.0e-68 262.7 236 66.5
Eucgr.D02068 Eucalyptus grandis HOM05D006466 ORTHO05D008084 6.7e-68 261.5 234 63.7
Sabra01G0094900 Salix brachista HOM05D006466 ORTHO05D008084 3.3e-67 259.2 235 60.4
QL12p012545 Quercus lobata HOM05D006466 ORTHO05D008084 4.3e-67 258.8 239 64.0
Gohir.A12G217700 Gossypium hirsutum HOM05D006466 ORTHO05D008084 1.5e-64 250.4 235 60.4
Gorai.008G235900 Gossypium raimondii HOM05D006466 ORTHO05D008084 1.0e-63 247.7 235 60.4
Hma1.2p1_2380F.1_g320960 Hydrangea macrophylla HOM05D006466 ORTHO05D008084 1.0e-63 247.7 244 61.1
MD04G1088600 Malus domestica HOM05D006466 ORTHO05D008084 1.3e-63 247.3 247 63.2
Ciclev10005762m.g Citrus clementina HOM05D006466 ORTHO05D008084 2.2e-63 246.5 243 63.4
Dinv39131 Davidia involucrata HOM05D006466 ORTHO05D008084 2.2e-63 246.5 240 61.2
Gohir.D12G220200 Gossypium hirsutum HOM05D006466 ORTHO05D008084 6.5e-63 245.0 235 59.6
PGR031G1557 Punica granatum HOM05D006466 ORTHO05D008084 2.5e-62 243.0 238 60.1
CiPaw.11G153200 Carya illinoinensis HOM05D006466 ORTHO05D008084 4.2e-62 242.3 237 62.0
Actinidia27463 Actinidia chinensis HOM05D006466 ORTHO05D008084 9.3e-62 241.1 239 59.8
ClCG01G004000 Citrullus lanatus HOM05D006466 ORTHO05D008084 1.6e-61 240.4 236 61.4
Manes.01G079600 Manihot esculenta HOM05D006466 ORTHO05D008084 1.3e-60 237.3 234 60.7
MELO3C005537.2 Cucumis melo HOM05D006466 ORTHO05D008084 1.8e-60 236.9 236 59.7
Sed0026776 Sechium edule HOM05D006466 ORTHO05D008084 3.0e-60 236.1 234 59.8
CsaV3_5G004180 Cucumis sativus L. HOM05D006466 ORTHO05D008084 3.9e-60 235.7 236 58.9
Manes.15G178400 Manihot esculenta HOM05D006466 ORTHO05D008084 6.3e-58 228.4 222 59.5
GSVIVG01001313001 Vitis vinifera HOM05D006466 ORTHO05D008084 1.4e-57 227.3 240 57.1
Prupe.5G071300 Prunus persica HOM05D006466 ORTHO05D008084 3.1e-57 226.1 235 58.7
CANSAT21G1921 Cannabis sativa HOM05D006466 ORTHO05D008084 4.1e-57 225.7 248 59.3
Manes.15G178500 Manihot esculenta HOM05D006466 ORTHO05D008084 4.1e-57 225.7 221 60.2
Atru.chr2.1841 Acer truncatum HOM05D006466 ORTHO05D008084 5.3e-57 225.3 239 59.0
Solyc08g078740.1 Solanum lycopersicum HOM05D006466 ORTHO05D008084 5.3e-57 225.3 227 57.3
Sopen08g027210 Solanum pennellii HOM05D006466 ORTHO05D008084 5.3e-57 225.3 227 57.3
Sed0012351 Sechium edule HOM05D006466 ORTHO05D008084 9.0e-57 224.6 237 58.6
PGSC0003DMG401004755 Solanum tuberosum HOM05D006466 ORTHO05D008084 2.0e-56 223.4 227 56.8
Lsat_1_v5_gn_3_521 Lactuca sativa HOM05D006466 ORTHO05D008084 5.9e-56 221.9 226 60.2
Lj1A353T9 Lonicera japonica HOM05D006466 ORTHO05D008084 1.3e-55 220.7 231 57.1
Ah.12g056750 Amaranthus hybridus HOM05D006466 ORTHO05D008084 2.2e-55 219.9 230 59.6
Medtr4g101030 Medicago truncatula HOM05D006466 ORTHO05D008084 5.0e-55 218.8 241 58.1
DCAR_008489 Daucus carota HOM05D005079 ORTHO05D006362 1.9e-54 216.9 239 57.3
Nitab4.5_0000312g0170 Nicotiana tabacum HOM05D006466 ORTHO05D008084 2.5e-54 216.5 242 53.7
Nitab4.5_0008481g0010 Nicotiana tabacum HOM05D006466 ORTHO05D008084 4.2e-54 215.7 239 54.0
TAR375G0032 Trochodendron aralioides HOM05D006466 ORTHO05D008084 6.1e-53 211.8 237 57.4
Cpa.g.sc29.144 Carica papaya HOM05D006466 ORTHO05D008084 2.3e-52 209.9 221 58.8
ECA232G3467 Erigeron canadensis HOM05D006466 ORTHO05D008084 3.7e-50 202.6 223 54.3
PSO170G1975 Papaver somniferum HOM05D006466 ORTHO05D008084 4.8e-50 202.2 223 55.6
PSO528G0015 Papaver somniferum HOM05D006466 ORTHO05D008084 4.8e-50 202.2 223 56.5
Carub.0007s2494 Capsella rubella HOM05D006466 ORTHO05D008084 3.1e-49 199.5 250 52.4
Aa31LG2G12660 Aethionema arabicum HOM05D006466 ORTHO05D008084 5.3e-49 198.7 236 53.8
MSTRG.12091 Avicennia marina HOM05D006466 ORTHO05D008084 6.9e-49 198.4 228 56.1
SalBow6G4398 Salvia bowleyana HOM05D006466 ORTHO05D008084 1.2e-48 197.6 182 63.7
BcaNung02868 Brassica carinata HOM05D006466 ORTHO05D008084 2.0e-48 196.8 248 50.8
CARHR222950 Cardamine hirsuta HOM05D006466 ORTHO05D008084 2.0e-48 196.8 252 51.6
AL7G38350 Arabidopsis lyrata HOM05D006466 ORTHO05D008084 1.7e-47 193.7 258 50.4
AL7G38400 Arabidopsis lyrata HOM05D006466 ORTHO05D008084 1.7e-47 193.7 258 50.4
arahy.Tifrunner.gnm1.ann1.HK6I2L Arachis hypogaea HOM05D006466 ORTHO05D008084 2.2e-47 193.4 241 51.9
Lj4g0024258 Lotus japonicus HOM05D006466 ORTHO05D008084 2.2e-47 193.4 234 56.0
Psat4g071640 Pisum sativum HOM05D006466 ORTHO05D008084 2.9e-47 193.0 186 61.3
Sp7g15110 Schrenkiella parvula HOM05D006466 ORTHO05D008084 2.9e-47 193.0 253 51.4
CDE02G4728 Ceratophyllum demersum HOM05D006466 ORTHO05D008084 5.0e-47 192.2 210 55.2
TPR.G37616 Trifolium pratense HOM05D006466 ORTHO05D008084 8.5e-47 191.4 244 50.8
Peaxi162Scf00002g00172 Petunia axillaris HOM05D006466 ORTHO05D008084 2.5e-46 189.9 248 48.8
unitig_61.g26196 Utricularia gibba HOM05D006466 ORTHO05D008084 2.5e-46 189.9 224 53.1
Rhsim07G0108000 Rhododendron simsii HOM05D006466 ORTHO05D008084 5.5e-46 188.7 185 60.5
arahy.Tifrunner.gnm1.ann1.LISY29 Arachis hypogaea HOM05D006466 ORTHO05D008084 7.2e-46 188.3 242 51.2
arahy.Tifrunner.gnm1.ann1.VT8LY8 Arachis hypogaea HOM05D006466 ORTHO05D008084 9.4e-46 188.0 241 51.5
SHI10480 Sapria himalayana HOM05D006466 ORTHO05D008084 3.6e-45 186.0 242 50.8
BcaC06g33488 Brassica carinata HOM05D006466 ORTHO05D008084 4.7e-45 185.7 253 49.0
C07p47980 Brassica napus HOM05D006466 ORTHO05D008084 4.7e-45 185.7 253 49.0
BolC7t45321H Brassica oleracea HOM05D006466 ORTHO05D008084 4.7e-45 185.7 253 49.0
Nn1g01036 Nelumbo nucifera HOM05D006466 ORTHO05D008084 4.7e-45 185.7 227 52.0
Eucgr.D02058 Eucalyptus grandis HOM05D006466 ORTHO05D008084 6.1e-45 185.3 235 52.3
Migut.A00968 Erythranthe guttata HOM05D006466 ORTHO05D008084 1.0e-44 184.5 183 60.1
Thhalv10026056m.g Eutrema salsugineum HOM05D006466 ORTHO05D008084 1.0e-44 184.5 252 50.4
HPP92_014482 Vanilla planifolia HOM05D006466 ORTHO05D008084 2.3e-44 183.3 256 49.6
A03p49940 Brassica napus HOM05D006466 ORTHO05D008084 3.9e-44 182.6 255 49.0
BraA03t14087Z Brassica rapa HOM05D006466 ORTHO05D008084 3.9e-44 182.6 255 49.0
Phvul.003G219800 Phaseolus vulgaris HOM05D006466 ORTHO05D008084 1.5e-43 180.6 220 52.7
SGA_v2.0_scaffold120G32877 Striga asiatica HOM05D006466 ORTHO05D008084 2.6e-43 179.9 249 50.6
AT4G16535 Arabidopsis thaliana HOM05D006466 ORTHO05D008084 3.3e-43 179.5 250 50.0
ATR0193G040 Amborella trichopoda HOM05D006466 ORTHO05D008084 1.3e-42 177.6 179 54.2
Aqoxy6G01886 Aquilegia oxysepala HOM05D006466 ORTHO05D008084 1.1e-41 174.5 248 46.8
arahy.Tifrunner.gnm1.ann1.MY6G43 Arachis hypogaea HOM05D006466 ORTHO05D008084 1.8e-41 173.7 235 49.4
Cc08_g12600 Coffea canephora HOM05D006466 ORTHO05D008084 3.1e-41 172.9 202 52.5
GSVIVG01030884001 Vitis vinifera HOM05D006466 ORTHO05D008084 9.1e-41 171.4 221 48.4
Lj8A452G56 Lonicera japonica HOM05D006466 ORTHO05D008084 3.5e-40 169.5 234 48.3
VMungo0251G3296 Vigna mungo HOM05D006466 ORTHO05D008084 7.7e-40 168.3 231 48.9
Lalb_Chr16g0389331 Lupinus albus HOM05D006466 ORTHO05D008084 3.8e-39 166.0 236 46.2
Nn6g33981 Nelumbo nucifera HOM05D006466 ORTHO05D008084 1.9e-38 163.7 166 54.2
Ca_21959_v3 Cicer arietinum L. HOM05D006466 ORTHO05D008084 2.5e-38 163.3 244 45.5
SEGI_30297 Sequoiadendron giganteum HOM05D006466 ORTHO05D008084 2.3e-36 156.8 252 43.7
Glyma.17G140900 Glycine max HOM05D006466 ORTHO05D008084 5.2e-36 155.6 234 47.4
Oeu019590.1 Olea europaea HOM05D006466 ORTHO05D008084 4.4e-35 152.5 225 50.2
Os10g0507500 Oryza sativa ssp. japonica HOM05D006466 ORTHO05D008084 9.7e-35 151.4 231 45.9
AUR62007505 Chenopodium quinoa HOM05D006466 ORTHO05D008084 1.3e-34 151.0 219 45.7
AagrBONN_evm.TU.Sc2ySwM_228.639 Anthoceros agrestis HOM05D007188 ORTHO05D009102 9.1e-33 144.8 225 43.1
AUR62039958 Chenopodium quinoa HOM05D006466 ORTHO05D008084 1.6e-32 144.1 213 44.6
CDE11G0010 Ceratophyllum demersum HOM05D006466 ORTHO05D008084 1.1e-30 137.9 192 49.0
arahy.Tifrunner.gnm1.ann1.AC5BZW Arachis hypogaea HOM05D006466 ORTHO05D008084 1.6e-29 134.0 169 52.1
Mapoly0015s0012 Marchantia polymorpha HOM05D006466 ORTHO05D008084 5.3e-25 119.0 253 36.0
arahy.Tifrunner.gnm1.ann1.Y2DLV0 Arachis hypogaea HOM05D006466 ORTHO05D008084 2.7e-24 116.7 110 54.5
arahy.Tifrunner.gnm1.ann1.W2BU8F Arachis hypogaea HOM05D004339 ORTHO05D002389 2.1e-21 107.1 173 46.8
HanXRQChr02g0051581 Helianthus annuus HOM05D006466 ORTHO05D008084 1.8e-20 104.0 113 59.3
Pp3c3_19850 Physcomitrium patens HOM05D006466 ORTHO05D008084 2.3e-20 103.6 230 36.5
Actinidia05202 Actinidia chinensis HOM05D006466 ORTHO05D008084 4.8e-18 95.9 91 57.1
Zm00001eb044010 Zea mays HOM05D006466 ORTHO05D008084 7.0e-17 92.0 68 69.1
Oeu039628.1 Olea europaea HOM05D006466 ORTHO05D008084 4.5e-16 89.4 54 79.6
Eucgr.L01522 Eucalyptus grandis HOM05D006466 ORTHO05D008084 1.5e-14 84.3 51 78.4
Sc22g0000810 Simmondsia chinensis HOM05D006466 ORTHO05D008084 5.2e-12 75.9 121 47.9
BcaC04g19403 Brassica carinata HOM05D006466 ORTHO05D008084 1.5e-11 74.3 143 43.4
BolC9t58475H Brassica oleracea HOM05D006466 ORTHO05D008084 1.5e-11 74.3 143 43.4
C03p73400 Brassica napus HOM05D006466 ORTHO05D008084 1.0e-07 61.6 99 42.4
Cre06.g300200 Chlamydomonas reinhardtii HOM05D006466 ORTHO05D008084 1.0e-07 61.6 170 38.2
arahy.Tifrunner.gnm1.ann1.X9JZY0 Arachis hypogaea HOM05D004687 ORTHO05D006002 1.3e-07 61.2 80 42.5
BcaC01g01648 Brassica carinata HOM05D006466 ORTHO05D008084 8.6e-07 58.5 103 39.8
BraA04t17310Z Brassica rapa HOM05D006466 ORTHO05D008084 1.9e-06 57.4 94 41.5
CBR_g29445 Chara braunii HOM05D006466 ORTHO05D008084 5.6e-06 55.8 89 43.8


User provided reference genes

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