Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G2171 Fragaria x ananassa HOM05D004430 ORTHO05D005088 0.0e+00 2712.9 1527 100.0
FAN13G0016 Fragaria x ananassa HOM05D004430 ORTHO05D005088 0.0e+00 2511.1 1557 89.8
FvH4_5g05640 Fragaria vesca HOM05D004430 ORTHO05D005088 0.0e+00 2503.4 1558 88.5
FAN08G1542 Fragaria x ananassa HOM05D004430 ORTHO05D005088 0.0e+00 2460.3 1564 88.1
FAN18G1146 Fragaria x ananassa HOM05D004430 ORTHO05D005088 0.0e+00 2454.9 1557 88.1
FAN18G2048 Fragaria x ananassa HOM05D004430 ORTHO05D005088 0.0e+00 2414.8 1558 86.3
RcHm_v2.0_Chr7g0193171 Rosa chinensis HOM05D004430 ORTHO05D005088 0.0e+00 2251.5 1567 80.2
Prupe.5G170400 Prunus persica HOM05D004430 ORTHO05D005088 0.0e+00 1664.4 1709 59.0
MD06G1170800 Malus domestica HOM05D004430 ORTHO05D005088 0.0e+00 1649.4 1621 60.2
MD14G1176500 Malus domestica HOM05D004430 ORTHO05D005088 0.0e+00 1579.3 1625 59.1
Atru.chr9.2519 Acer truncatum HOM05D004430 ORTHO05D005088 0.0e+00 1204.5 1679 49.1
QL10p008934 Quercus lobata HOM05D004430 ORTHO05D005088 0.0e+00 1152.1 1640 48.4
Dinv20629 Davidia involucrata HOM05D004430 ORTHO05D005088 0.0e+00 1149.4 1629 48.3
Thecc.03G018800 Theobroma cacao HOM05D004430 ORTHO05D005088 0.0e+00 1118.6 1603 47.2
Gorai.005G135600 Gossypium raimondii HOM05D004430 ORTHO05D005088 0.0e+00 1113.2 1623 47.2
Gohir.D02G117900 Gossypium hirsutum HOM05D004430 ORTHO05D005088 0.0e+00 1110.9 1624 46.9
GSVIVG01007703001 Vitis vinifera HOM05D004430 ORTHO05D005088 0.0e+00 1101.7 1565 47.7
Gohir.A03G089900 Gossypium hirsutum HOM05D004430 ORTHO05D005088 0.0e+00 1101.3 1627 46.9
Dinv38562 Davidia involucrata HOM05D004430 ORTHO05D005088 0.0e+00 1100.5 1717 45.0
COL.COLO4_30100 Corchorus olitorius HOM05D004430 ORTHO05D005088 0.0e+00 1085.5 1636 46.3
CSS0010843 Camellia sinensis var. sinensis HOM05D004430 ORTHO05D005088 2.8e-307 1059.3 1595 46.1
Duzib205G1695 Durio zibethinus HOM05D004430 ORTHO05D005088 2.0e-300 1036.6 1633 44.9
CANSAT80G0620 Cannabis sativa HOM05D004430 ORTHO05D005088 5.7e-300 1035.0 1632 46.2
Duzib084G1065 Durio zibethinus HOM05D004430 ORTHO05D005088 1.6e-294 1016.9 1629 45.0
Lj4g0003819 Lotus japonicus HOM05D004430 ORTHO05D005088 9.1e-290 1001.1 1630 44.7
Potri.015G079800 Populus trichocarpa HOM05D004430 ORTHO05D005088 2.0e-284 983.4 1614 43.4
Manes.06G107200 Manihot esculenta HOM05D004430 ORTHO05D005088 1.2e-278 964.1 1663 41.7
Glyma.17G087600 Glycine max HOM05D004430 ORTHO05D005088 2.1e-278 963.4 1627 43.8
TWI39G0976 Tripterygium wilfordii HOM05D004430 ORTHO05D005088 2.3e-277 959.9 1636 42.8
Potri.012G088500 Populus trichocarpa HOM05D004430 ORTHO05D005088 6.8e-277 958.4 1618 43.0
Lj9C446G12 Lonicera japonica HOM05D004430 ORTHO05D005088 4.8e-275 952.2 1596 43.5
Manes.06G107300 Manihot esculenta HOM05D004430 ORTHO05D005088 8.3e-275 951.4 1672 41.8
arahy.Tifrunner.gnm1.ann1.FBBL0Z Arachis hypogaea HOM05D004430 ORTHO05D005088 1.7e-272 943.7 1633 43.2
Duzib068G0887 Durio zibethinus HOM05D004430 ORTHO05D005088 2.2e-272 943.3 1637 42.5
Sabra15G0104100 Salix brachista HOM05D004430 ORTHO05D005088 2.7e-270 936.4 1602 42.4
TWI14G0761 Tripterygium wilfordii HOM05D004430 ORTHO05D005088 1.7e-267 927.2 1650 41.4
Lalb_Chr12g0201701 Lupinus albus HOM05D004430 ORTHO05D005088 1.6e-265 920.6 1634 42.9
TAR374G1038 Trochodendron aralioides HOM05D004430 ORTHO05D005088 2.3e-261 906.7 1662 42.2
Sabra12G0063700 Salix brachista HOM05D004430 ORTHO05D005088 8.9e-261 904.8 1644 41.5
ClCG06G017130 Citrullus lanatus HOM05D004430 ORTHO05D005088 1.3e-256 891.0 1608 41.7
Lalb_Chr07g0182821 Lupinus albus HOM05D004430 ORTHO05D005088 3.9e-256 889.4 1633 41.1
vmacro19413 Vaccinium macrocarpon HOM05D004430 ORTHO05D005088 5.6e-255 885.6 1627 41.4
CiPaw.11G023400 Carya illinoinensis HOM05D004430 ORTHO05D005088 8.0e-254 881.7 1554 42.0
Ca_16154_v3 Cicer arietinum L. HOM05D004430 ORTHO05D005088 5.2e-253 879.0 1613 42.3
VMungo1215G2998 Vigna mungo HOM05D004430 ORTHO05D005088 9.8e-252 874.8 1659 40.6
Glyma.05G039400 Glycine max HOM05D004430 ORTHO05D005088 9.2e-250 868.2 1616 41.5
TPR.G28716 Trifolium pratense HOM05D004430 ORTHO05D005088 1.6e-246 857.4 1611 41.0
Ciclev10018497m.g Citrus clementina HOM05D004430 ORTHO05D005088 2.1e-246 857.1 1429 43.8
Sed0016557 Sechium edule HOM05D004430 ORTHO05D005088 4.0e-245 852.8 1580 40.8
CsaV3_1G001360 Cucumis sativus L. HOM05D004430 ORTHO05D005088 1.9e-242 844.0 1619 40.1
MELO3C026283.2 Cucumis melo HOM05D004430 ORTHO05D005088 5.4e-242 842.4 1619 40.3
Lalb_Chr13g0297721 Lupinus albus HOM05D004430 ORTHO05D005088 6.0e-241 839.0 1643 41.6
Ca_16155_v3 Cicer arietinum L. HOM05D004430 ORTHO05D005088 1.2e-236 824.7 1595 41.0
Nitab4.5_0003229g0080 Nicotiana tabacum HOM05D004430 ORTHO05D005088 6.6e-232 808.9 1618 39.2
Solyc03g112660.3 Solanum lycopersicum HOM05D004430 ORTHO05D005088 8.1e-230 802.0 1619 38.8
Rhsim08G0174600 Rhododendron simsii HOM05D004430 ORTHO05D005088 6.8e-229 798.9 1629 39.6
Sed0007760 Sechium edule HOM05D004430 ORTHO05D005088 2.6e-228 797.0 1600 39.3
Sopen03g031740 Solanum pennellii HOM05D004430 ORTHO05D005088 1.7e-227 794.3 1620 38.5
Medtr3g077440 Medicago truncatula HOM05D004430 ORTHO05D005088 3.5e-225 786.6 1605 39.0
Phvul.003G202300 Phaseolus vulgaris HOM05D004430 ORTHO05D005088 1.0e-224 785.0 1680 39.0
Nitab4.5_0001207g0060 Nicotiana tabacum HOM05D004430 ORTHO05D005088 1.5e-223 781.2 1641 38.5
Eucgr.B00248 Eucalyptus grandis HOM05D004430 ORTHO05D005088 3.1e-221 773.5 1629 38.9
PGR083G1025 Punica granatum HOM05D004430 ORTHO05D005088 2.0e-220 770.8 1626 39.2
Nn3g16781 Nelumbo nucifera HOM05D004430 ORTHO05D005088 7.1e-218 762.3 1701 38.2
AUR62028764 Chenopodium quinoa HOM05D004430 ORTHO05D005088 8.7e-216 755.4 1628 38.3
CiPaw.12G028500 Carya illinoinensis HOM05D004430 ORTHO05D005088 7.3e-215 752.3 1314 42.6
Peaxi162Scf00089g00174 Petunia axillaris HOM05D004430 ORTHO05D005088 1.2e-209 734.9 1627 37.1
Oeu036008.4 Olea europaea HOM05D004430 ORTHO05D005088 1.9e-207 727.6 1579 38.3
AUR62008183 Chenopodium quinoa HOM05D004430 ORTHO05D005088 3.3e-207 726.9 1606 37.9
CAN.G1166.22 Capsicum annuum HOM05D004430 ORTHO05D005088 2.0e-204 717.6 1623 36.8
THA.LOC104809247 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 1.7e-203 714.5 1584 37.4
Cc04_g12380 Coffea canephora HOM05D004430 ORTHO05D005088 1.5e-199 701.4 1276 40.9
Migut.D01964 Erythranthe guttata HOM05D004430 ORTHO05D005088 1.9e-194 684.5 1658 37.2
Oeu024704.1 Olea europaea HOM05D004430 ORTHO05D005088 7.9e-193 679.1 1633 35.9
THA.LOC104809778 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 1.1e-191 675.2 1580 36.3
Psat5g115080 Pisum sativum HOM05D004430 ORTHO05D005088 3.3e-191 673.7 1604 37.7
SalBow6G6763 Salvia bowleyana HOM05D004430 ORTHO05D005088 8.2e-190 669.1 1635 36.4
SalBow6G6905 Salvia bowleyana HOM05D004430 ORTHO05D005088 4.1e-189 666.8 1635 36.5
TPR.G28721 Trifolium pratense HOM05D004430 ORTHO05D005088 1.2e-188 665.2 1588 37.2
EL10Ac5g10708 Beta vulgaris HOM05D004430 ORTHO05D005088 2.5e-186 657.5 1618 36.0
Psat5g115040 Pisum sativum HOM05D004430 ORTHO05D005088 4.2e-186 656.8 1589 36.4
Hund02762 Selenicereus undatus HOM05D004430 ORTHO05D005088 3.0e-184 650.6 1586 37.1
Medtr3g077450 Medicago truncatula HOM05D004430 ORTHO05D005088 7.4e-183 646.0 1597 36.2
MBI19_g24062_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 4.1e-181 640.2 1762 35.1
Sc04g0001690 Simmondsia chinensis HOM05D004430 ORTHO05D005088 1.3e-179 635.2 1577 37.7
Actinidia19338 Actinidia chinensis HOM05D004430 ORTHO05D005088 2.2e-179 634.4 1226 40.7
MSTRG.4361 Avicennia marina HOM05D004430 ORTHO05D005088 1.1e-178 632.1 1634 35.6
Ah.11g051460 Amaranthus hybridus HOM05D004430 ORTHO05D005088 4.2e-178 630.2 1631 35.2
ECA232G4503 Erigeron canadensis HOM05D004430 ORTHO05D005088 4.5e-172 610.1 1576 36.8
Aqoxy3G01105 Aquilegia oxysepala HOM05D004430 ORTHO05D005088 1.7e-171 608.2 1664 35.2
AT4G24680 Arabidopsis thaliana HOM05D004430 ORTHO05D005088 3.6e-161 573.9 1586 33.7
Sp7g22670 Schrenkiella parvula HOM05D004430 ORTHO05D005088 1.4e-157 562.0 1594 33.9
PSO017G2086 Papaver somniferum HOM05D004430 ORTHO05D005088 4.1e-157 560.5 1744 33.2
PGSC0003DMG402018164 Solanum tuberosum HOM05D004430 ORTHO05D005088 1.0e-155 555.8 1353 35.4
PSO478G3312 Papaver somniferum HOM05D004430 ORTHO05D005088 8.5e-155 552.7 1750 33.1
CARHR232060 Cardamine hirsuta HOM05D004430 ORTHO05D005088 3.6e-153 547.4 1580 33.0
AL7G28520 Arabidopsis lyrata HOM05D004430 ORTHO05D005088 8.8e-152 542.7 1592 34.0
Lsat_1_v5_gn_4_75700 Lactuca sativa HOM05D004430 ORTHO05D005088 2.8e-150 537.7 1577 34.1
Carub.0007s1638 Capsella rubella HOM05D004430 ORTHO05D005088 3.7e-150 537.3 1592 33.2
Thhalv10024213m.g Eutrema salsugineum HOM05D004430 ORTHO05D005088 7.7e-148 529.6 1627 33.3
Aa31LG4G9770 Aethionema arabicum HOM05D004430 ORTHO05D005088 2.1e-145 521.5 1578 33.8
Thhalv10024214m.g Eutrema salsugineum HOM05D004430 ORTHO05D005088 1.4e-144 518.8 1604 33.1
C07p53740 Brassica napus HOM05D004430 ORTHO05D005088 1.1e-141 509.2 1584 33.0
BolC7t45865H Brassica oleracea HOM05D004430 ORTHO05D005088 1.4e-141 508.8 1585 33.0
BraA03t14619Z Brassica rapa HOM05D004430 ORTHO05D005088 1.4e-141 508.8 1584 33.1
A03p55450 Brassica napus HOM05D004430 ORTHO05D005088 9.2e-141 506.1 1586 33.1
SGA_v2.0_scaffold7G04148 Striga asiatica HOM05D004430 ORTHO05D005088 1.3e-139 502.3 1597 33.4
Hma1.2p1_0046F.1_g026730 Hydrangea macrophylla HOM05D004430 ORTHO05D005088 1.9e-138 498.4 1198 37.4
arahy.Tifrunner.gnm1.ann1.I95HTR Arachis hypogaea HOM05D004430 ORTHO05D005088 1.7e-134 485.3 786 43.9
TAR622G0490 Trochodendron aralioides HOM05D004430 ORTHO05D005088 8.3e-134 483.0 993 39.0
HanXRQChr17g0548691 Helianthus annuus HOM05D004430 ORTHO05D005088 6.0e-132 476.9 1546 35.6
Haze_07543 Corylus avellana HOM05D004430 ORTHO05D005088 3.0e-131 474.6 1579 31.7
C01p20010 Brassica napus HOM05D004430 ORTHO05D005088 2.7e-124 451.4 1575 31.0
HanXRQChr11g0348291 Helianthus annuus HOM05D004430 ORTHO05D005088 4.6e-124 450.7 696 46.7
BcaC06g32869 Brassica carinata HOM05D004430 ORTHO05D005088 5.2e-120 437.2 1561 31.0
BolC1t01928H Brassica oleracea HOM05D004430 ORTHO05D005088 4.4e-119 434.1 1591 30.8
MBI10_g44386_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 9.9e-119 433.0 1540 31.1
BraA01t01536Z Brassica rapa HOM05D004430 ORTHO05D005088 1.4e-117 429.1 1592 30.5
A01p16020 Brassica napus HOM05D004430 ORTHO05D005088 2.4e-117 428.3 1588 30.5
BcaC09g50842 Brassica carinata HOM05D004430 ORTHO05D005088 3.8e-110 404.4 1556 30.0
ATR0757G157 Amborella trichopoda HOM05D004430 ORTHO05D005088 1.2e-108 399.4 1662 30.3
BcaB03g12441 Brassica carinata HOM05D004430 ORTHO05D005088 4.9e-102 377.5 1519 29.4
unitig_37.g12744 Utricularia gibba HOM05D004430 ORTHO05D005088 2.1e-97 362.1 1609 29.6
Actinidia19112 Actinidia chinensis HOM05D004430 ORTHO05D005088 1.9e-90 339.0 339 59.0
Actinidia33085 Actinidia chinensis HOM05D004430 ORTHO05D005088 7.2e-77 293.9 697 36.9
Zm00001eb136860 Zea mays HOM05D004430 ORTHO05D005088 9.1e-64 250.4 1623 28.2
CDE06G0437 Ceratophyllum demersum HOM05D004430 ORTHO05D005088 5.0e-62 244.6 1544 26.6
HPP92_024337 Vanilla planifolia HOM05D004430 ORTHO05D005088 1.2e-60 240.0 1298 28.9
Cpa.g.sc153.6 Carica papaya HOM05D004430 ORTHO05D005088 2.7e-60 238.8 193 72.5
MBI10_g44384_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 3.9e-59 235.0 203 65.5
Actinidia19110 Actinidia chinensis HOM05D005107 ORTHO05D006200 3.7e-57 228.4 508 35.2
Zm00001eb028710 Zea mays HOM05D004430 ORTHO05D005088 9.1e-56 223.8 1553 26.9
Actinidia19111 Actinidia chinensis HOM05D004430 ORTHO05D005088 7.5e-50 204.1 461 36.9
HPP92_006241 Vanilla planifolia HOM05D004430 ORTHO05D005088 2.4e-48 199.1 211 56.4
SHI17143 Sapria himalayana HOM05D004430 ORTHO05D005088 3.5e-47 195.3 705 30.5
SEGI_40513 Sequoiadendron giganteum HOM05D004430 ORTHO05D005088 1.4e-43 183.3 1496 26.5
HPP92_006251 Vanilla planifolia HOM05D004430 ORTHO05D005088 3.0e-43 182.2 1616 23.9
Actinidia33086 Actinidia chinensis HOM05D004430 ORTHO05D005088 6.3e-41 174.5 369 37.9
unitig_46.g18473 Utricularia gibba HOM05D004430 ORTHO05D007989 4.1e-40 171.8 1533 25.9
HPP92_024330 Vanilla planifolia HOM05D004430 ORTHO05D005088 3.7e-33 148.7 1294 25.2
CDE02G0036 Ceratophyllum demersum HOM05D004430 ORTHO05D005088 2.7e-23 115.9 1548 22.9
Psat2g086200 Pisum sativum HOM05D004430 ORTHO05D005088 2.3e-22 112.8 190 42.6
TAR629G1829 Trochodendron aralioides HOM05D003072 ORTHO05D008464 6.2e-20 104.8 129 45.0
TAR622G0342 Trochodendron aralioides HOM05D004430 ORTHO05D005088 1.4e-19 103.6 66 74.2
Psat2g086240 Pisum sativum HOM05D004430 ORTHO05D005088 3.1e-19 102.4 202 38.6
Actinidia19337 Actinidia chinensis HOM05D004430 ORTHO05D005088 2.6e-18 99.4 139 49.6
Psat2g098600 Pisum sativum HOM05D003093 ORTHO05D005088 4.4e-18 98.6 168 41.7
TAR622G0951 Trochodendron aralioides HOM05D004430 ORTHO05D005088 5.8e-18 98.2 147 44.9
Pp3c26_2670 Physcomitrium patens HOM05D004430 ORTHO05D005088 9.8e-18 97.4 235 42.1
THA.LOC104816711 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 9.2e-16 90.9 282 31.2
SMO174G0145 Selaginella moellendorffii HOM05D004430 ORTHO05D005088 3.5e-15 89.0 882 25.5
THA.LOC104822199 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 1.3e-14 87.0 145 37.9
CBR_g19277 Chara braunii HOM05D004430 ORTHO05D005088 5.6e-13 81.6 517 31.3
Mapoly0057s0099 Marchantia polymorpha HOM05D004430 ORTHO05D005088 9.5e-13 80.9 1596 26.8
Pp3c4_23740 Physcomitrium patens HOM05D004430 ORTHO05D005088 9.8e-10 70.9 1416 24.6
Pp3c4_22960 Physcomitrium patens HOM05D004430 ORTHO05D005088 7.1e-08 64.7 1376 24.8
Psat0s4895g0040 Pisum sativum HOM05D002020 ORTHO05D005088 4.6e-07 62.0 62 54.8


User provided reference genes

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