Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G2154 Fragaria x ananassa HOM05D001108 ORTHO05D005418 3.0e-154 548.5 283 100.0
FvH4_5g33380 Fragaria vesca HOM05D001108 ORTHO05D005418 1.2e-142 510.0 283 93.6
FAN18G0425 Fragaria x ananassa HOM05D001108 ORTHO05D005418 7.6e-142 507.3 283 93.3
RcHm_v2.0_Chr7g0232111 Rosa chinensis HOM05D001108 ORTHO05D005418 1.2e-131 473.4 279 88.5
Prupe.3G137500 Prunus persica HOM05D001108 ORTHO05D005418 4.1e-103 378.6 286 73.1
MD09G1247800 Malus domestica HOM05D001108 ORTHO05D005418 2.7e-102 375.9 279 74.2
MD17G1240700 Malus domestica HOM05D001108 ORTHO05D005418 1.5e-100 370.2 261 75.9
QL08p038694 Quercus lobata HOM05D001108 ORTHO05D005418 4.2e-100 368.6 287 72.5
Atru.chr6.2997 Acer truncatum HOM05D001108 ORTHO05D005418 5.5e-100 368.2 286 71.7
CiPaw.04G125800 Carya illinoinensis HOM05D001108 ORTHO05D005418 3.0e-98 362.5 285 69.8
Haze_21052 Corylus avellana HOM05D001108 ORTHO05D001619 9.1e-95 350.9 286 69.2
Ciclev10013903m.g Citrus clementina HOM05D001108 ORTHO05D005418 3.5e-94 349.0 286 67.8
Manes.13G146800 Manihot esculenta HOM05D001108 ORTHO05D005418 2.3e-93 346.3 284 67.6
CANSAT80G2367 Cannabis sativa HOM05D001108 ORTHO05D005418 1.5e-92 343.6 291 69.4
Thecc.05G172000 Theobroma cacao HOM05D001108 ORTHO05D005418 1.5e-92 343.6 289 66.4
Eucgr.K01017 Eucalyptus grandis HOM05D001108 ORTHO05D005418 4.2e-92 342.0 283 67.1
Sc21g0002830 Simmondsia chinensis HOM05D001108 ORTHO05D005418 1.6e-91 340.1 279 66.7
TWI75G0959 Tripterygium wilfordii HOM05D001108 ORTHO05D005418 1.6e-91 340.1 297 67.0
Lalb_Chr03g0029441 Lupinus albus HOM05D001108 ORTHO05D005418 2.1e-91 339.7 286 67.1
EL10Ac9g20764 Beta vulgaris HOM05D001108 ORTHO05D005418 2.8e-91 339.3 287 65.2
Gohir.A09G128300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 4.7e-91 338.6 286 67.5
Gorai.006G143100 Gossypium raimondii HOM05D001108 ORTHO05D005418 8.0e-91 337.8 288 66.0
Gohir.D09G124300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 1.8e-90 336.7 288 65.6
Glyma.12G112900 Glycine max HOM05D001108 ORTHO05D005418 3.0e-90 335.9 246 74.4
Ca_20056_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 1.5e-89 333.6 265 69.1
Lj3g0011439 Lotus japonicus HOM05D001108 ORTHO05D005418 1.5e-89 333.6 271 67.2
Potri.019G100500 Populus trichocarpa HOM05D001108 ORTHO05D005418 1.5e-89 333.6 286 65.0
VMungo1127G1775 Vigna mungo HOM05D001108 ORTHO05D005418 1.5e-89 333.6 275 69.1
COL.COLO4_33977 Corchorus olitorius HOM05D001108 ORTHO05D005418 2.6e-89 332.8 288 67.0
Medtr1g066930 Medicago truncatula HOM05D001108 ORTHO05D005418 3.4e-89 332.4 270 67.8
Phvul.011G114100 Phaseolus vulgaris HOM05D001108 ORTHO05D005418 3.4e-89 332.4 273 67.8
Hund07929 Selenicereus undatus HOM05D001108 ORTHO05D005418 3.4e-89 332.4 274 65.3
ClCG02G017630 Citrullus lanatus HOM05D001108 ORTHO05D005418 7.5e-89 331.3 280 64.6
HanXRQChr06g0171321 Helianthus annuus HOM05D001108 ORTHO05D005418 1.7e-88 330.1 286 65.7
CsaV3_6G013000 Cucumis sativus L. HOM05D001108 ORTHO05D005418 2.2e-88 329.7 278 64.4
CsaV3_6G012940 Cucumis sativus L. HOM05D001108 ORTHO05D005418 2.8e-88 329.3 274 64.6
Potri.013G131800 Populus trichocarpa HOM05D001108 ORTHO05D005418 1.4e-87 327.0 275 65.8
Sabra19G0110800 Salix brachista HOM05D001108 ORTHO05D005418 1.4e-87 327.0 286 64.3
Sabra19G0112200 Salix brachista HOM05D001108 ORTHO05D005418 1.4e-87 327.0 286 64.3
SalBow1G0161 Salvia bowleyana HOM05D001108 ORTHO05D005418 2.4e-87 326.2 241 70.5
Duzib093G1006 Durio zibethinus HOM05D001108 ORTHO05D005418 3.1e-87 325.9 287 65.9
PSO478G1555 Papaver somniferum HOM05D001108 ORTHO05D005418 3.1e-87 325.9 289 62.3
PGR142G4253 Punica granatum HOM05D001108 ORTHO05D005418 3.1e-87 325.9 285 64.9
Medtr0004s0220 Medicago truncatula HOM05D001108 ORTHO05D005418 4.1e-87 325.5 242 71.9
vmacro12300 Vaccinium macrocarpon HOM05D001108 ORTHO05D005418 4.1e-87 325.5 286 64.3
PSO675G3815 Papaver somniferum HOM05D001108 ORTHO05D005418 5.4e-87 325.1 289 62.6
Ah.01g015170 Amaranthus hybridus HOM05D001108 ORTHO05D005418 7.0e-87 324.7 282 63.1
Migut.C01348 Erythranthe guttata HOM05D001108 ORTHO05D005418 7.0e-87 324.7 288 64.2
PSO782G4551 Papaver somniferum HOM05D001108 ORTHO05D005418 9.2e-87 324.3 291 62.9
Nn1g04079 Nelumbo nucifera HOM05D001108 ORTHO05D005418 1.6e-86 323.6 275 64.7
PSO541G4613 Papaver somniferum HOM05D001108 ORTHO05D005418 1.6e-86 323.6 289 61.9
Sed0006413 Sechium edule HOM05D001108 ORTHO05D005418 1.6e-86 323.6 271 64.6
Cpa.g.sc34.160 Carica papaya HOM05D001108 ORTHO05D005418 2.0e-86 323.2 281 65.8
AUR62019549 Chenopodium quinoa HOM05D001108 ORTHO05D005418 2.7e-86 322.8 286 63.3
AUR62036092 Chenopodium quinoa HOM05D001108 ORTHO05D005418 4.5e-86 322.0 286 62.9
TAR627G0387 Trochodendron aralioides HOM05D001108 ORTHO05D005418 7.8e-86 321.2 294 62.9
HanXRQChr06g0171311 Helianthus annuus HOM05D001108 ORTHO05D005418 1.0e-85 320.9 278 65.5
Lsat_1_v5_gn_3_37280 Lactuca sativa HOM05D001108 ORTHO05D005418 1.0e-85 320.9 260 68.5
Thhalv10002078m.g Eutrema salsugineum HOM05D001108 ORTHO05D005418 2.3e-85 319.7 237 69.6
Lsat_1_v5_gn_4_70021 Lactuca sativa HOM05D001108 ORTHO05D005418 2.9e-85 319.3 244 69.7
CSS0042510 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 3.8e-85 318.9 263 65.8
CAN.G248.33 Capsicum annuum HOM05D001108 ORTHO05D005418 6.6e-85 318.2 302 60.9
HPP92_003131 Vanilla planifolia HOM05D001108 ORTHO05D005418 1.1e-84 317.4 267 62.2
unitig_60.g25406 Utricularia gibba HOM05D001108 ORTHO05D005418 1.9e-84 316.6 254 66.1
CARHR111330 Cardamine hirsuta HOM05D001108 ORTHO05D005418 2.5e-84 316.2 261 65.1
arahy.Tifrunner.gnm1.ann1.PPEG78 Arachis hypogaea HOM05D001108 ORTHO05D005418 3.3e-84 315.8 290 64.8
Rhsim06G0142500 Rhododendron simsii HOM05D001108 ORTHO05D005418 3.3e-84 315.8 286 62.9
Cfa017142 Carpinus fangiana HOM05D001108 ORTHO05D005418 5.6e-84 315.1 205 79.5
Sabra13G0111300 Salix brachista HOM05D001108 ORTHO05D005418 5.6e-84 315.1 268 64.9
arahy.Tifrunner.gnm1.ann1.85LIYI Arachis hypogaea HOM05D001108 ORTHO05D005418 9.5e-84 314.3 290 64.5
Nitab4.5_0000512g0050 Nicotiana tabacum HOM05D001108 ORTHO05D005418 9.5e-84 314.3 241 68.0
THA.LOC104824701 Tarenaya hassleriana HOM05D001108 ORTHO05D005418 9.5e-84 314.3 267 64.8
MSTRG.5628 Avicennia marina HOM05D001108 ORTHO05D005418 1.2e-83 313.9 288 62.2
Solyc07g054190.4 Solanum lycopersicum HOM05D001108 ORTHO05D005418 1.6e-83 313.5 289 62.6
CAN.G248.11 Capsicum annuum HOM05D001108 ORTHO05D005418 2.1e-83 313.2 213 74.2
arahy.Tifrunner.gnm1.ann1.SGC5R3 Arachis hypogaea HOM05D001108 ORTHO05D005418 4.7e-83 312.0 281 65.5
CSS0039738 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 4.7e-83 312.0 274 62.4
AUR62002952 Chenopodium quinoa HOM05D001108 ORTHO05D005418 4.7e-83 312.0 237 69.2
Haze_13157 Corylus avellana HOM05D001108 ORTHO05D005418 4.7e-83 312.0 205 77.6
A07p00070 Brassica napus HOM05D001108 ORTHO05D005418 6.1e-83 311.6 237 70.0
CSS0002926 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 6.1e-83 311.6 281 63.0
arahy.Tifrunner.gnm1.ann1.S0UG05 Arachis hypogaea HOM05D001108 ORTHO05D005418 8.0e-83 311.2 280 65.0
Nitab4.5_0004071g0020 Nicotiana tabacum HOM05D001108 ORTHO05D005418 8.0e-83 311.2 216 72.2
AT2G20690 Arabidopsis thaliana HOM05D001108 ORTHO05D005418 1.4e-82 310.5 243 66.3
Carub.0003s3520 Capsella rubella HOM05D001108 ORTHO05D005418 1.4e-82 310.5 244 67.6
Sopen07g028120 Solanum pennellii HOM05D001108 ORTHO05D005418 1.8e-82 310.1 289 62.3
CSS0044059 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 2.3e-82 309.7 259 65.6
AL3G53780 Arabidopsis lyrata HOM05D001108 ORTHO05D005418 3.0e-82 309.3 244 66.4
BraA07t27798Z Brassica rapa HOM05D001108 ORTHO05D005418 4.0e-82 308.9 237 69.6
Cc05_g07130 Coffea canephora HOM05D001108 ORTHO05D005418 6.8e-82 308.1 203 75.9
EL10Ac4g08320 Beta vulgaris HOM05D001108 ORTHO05D005418 8.9e-82 307.8 279 60.9
ECA246G0340 Erigeron canadensis HOM05D001108 ORTHO05D005418 3.4e-81 305.8 205 77.6
Cpa.g.sc34.159 Carica papaya HOM05D001108 ORTHO05D005418 4.4e-81 305.4 279 60.2
SGA_v2.0_scaffold92G28314 Striga asiatica HOM05D001108 ORTHO05D005418 9.8e-81 304.3 291 59.8
BcaB03g16863 Brassica carinata HOM05D001108 ORTHO05D005418 1.7e-80 303.5 246 67.5
Peaxi162Scf00132g00233 Petunia axillaris HOM05D001229 ORTHO05D005418 2.2e-80 303.1 240 67.1
C07p00210 Brassica napus HOM05D001108 ORTHO05D005418 6.4e-80 301.6 202 75.7
MELO3C000760.2 Cucumis melo HOM05D001108 ORTHO05D005418 1.1e-79 300.8 229 69.4
BcaC06g36761 Brassica carinata HOM05D001108 ORTHO05D005418 3.2e-79 299.3 202 75.2
BolC7t40471H Brassica oleracea HOM05D001108 ORTHO05D005418 3.2e-79 299.3 202 75.2
DCAR_013007 Daucus carota HOM05D001108 ORTHO05D005418 4.1e-79 298.9 203 76.4
PGSC0003DMG400018350 Solanum tuberosum HOM05D001108 ORTHO05D005418 2.0e-78 296.6 205 73.7
Sp3g33940 Schrenkiella parvula HOM05D001108 ORTHO05D005418 2.7e-78 296.2 194 76.3
AUR62007757 Chenopodium quinoa HOM05D001108 ORTHO05D005418 6.0e-78 295.0 229 68.1
Pp3c2_19260 Physcomitrium patens HOM05D001108 ORTHO05D005418 7.8e-78 294.7 201 73.6
SEGI_26411 Sequoiadendron giganteum HOM05D001108 ORTHO05D005418 1.5e-76 290.4 286 58.7
Aqoxy1G02436 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 4.3e-76 288.9 182 79.1
Nn1g06569 Nelumbo nucifera HOM05D001108 ORTHO05D005418 3.6e-75 285.8 199 71.9
CDE02G0464 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 3.1e-74 282.7 200 71.5
Mapoly0026s0114 Marchantia polymorpha HOM05D001108 ORTHO05D005418 2.6e-73 279.6 199 70.4
SMO137G0361 Selaginella moellendorffii HOM05D001108 ORTHO05D005418 4.4e-73 278.9 209 67.5
Aqoxy1G02437 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 1.7e-72 276.9 285 56.5
CBR_g36747 Chara braunii HOM05D001108 ORTHO05D005418 4.9e-72 275.4 209 67.9
AagrBONN_evm.TU.Sc2ySwM_228.5414 Anthoceros agrestis HOM05D001108 ORTHO05D005418 6.4e-72 275.0 200 69.0
Lj1P722T15 Lonicera japonica HOM05D001108 ORTHO05D005418 1.4e-71 273.9 184 76.1
ATR1096G056 Amborella trichopoda HOM05D001108 ORTHO05D005418 4.6e-70 268.9 264 58.3
Duzib128G0360 Durio zibethinus HOM05D001108 ORTHO05D005418 1.0e-69 267.7 251 63.7
Dinv26419 Davidia involucrata HOM05D001108 ORTHO05D005418 5.6e-68 261.9 180 71.7
CDE09G0563 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 1.4e-66 257.3 182 70.9
Dinv23643 Davidia involucrata HOM05D001108 ORTHO05D005418 3.1e-66 256.1 180 72.2
Zm00001eb410410 Zea mays HOM05D001108 ORTHO05D005418 2.6e-65 253.1 253 56.1
Ah.04g164360 Amaranthus hybridus HOM05D001108 ORTHO05D005418 9.9e-65 251.1 270 56.3
Zm00001eb410210 Zea mays HOM05D001108 ORTHO05D005418 1.4e-63 247.3 276 51.4
Actinidia11036 Actinidia chinensis HOM05D001108 ORTHO05D005418 4.6e-62 242.3 187 67.4
BcaC04g22783 Brassica carinata HOM05D001108 ORTHO05D005418 1.5e-60 237.3 167 71.9
Sabra19G0110900 Salix brachista HOM05D001108 ORTHO05D005418 1.9e-60 236.9 269 54.3
Os12g0541000 Oryza sativa ssp. japonica HOM05D001108 ORTHO05D005418 2.5e-60 236.5 242 53.3
MD09G1265300 Malus domestica HOM05D001108 ORTHO05D005418 3.4e-57 226.1 186 65.6
CAN.G248.16 Capsicum annuum HOM05D001108 ORTHO05D005418 1.3e-56 224.2 168 67.3
CAN.G851.1 Capsicum annuum HOM05D001108 ORTHO05D005418 1.3e-56 224.2 168 67.3
HanXRQChr06g0169711 Helianthus annuus HOM05D001108 ORTHO05D005418 3.8e-56 222.6 277 53.1
Psat4g001880 Pisum sativum HOM05D001108 ORTHO05D005418 5.1e-53 212.2 274 50.0
C09p15330 Brassica napus HOM05D001108 ORTHO05D005418 2.1e-51 206.8 193 60.6
CANSAT80G2295 Cannabis sativa HOM05D001108 ORTHO05D005418 6.2e-51 205.3 135 79.3
Cfa026241 Carpinus fangiana HOM05D001108 ORTHO05D005418 4.9e-48 195.7 228 48.2
unitig_88.g27586 Utricularia gibba HOM05D001108 ORTHO05D005418 4.9e-48 195.7 111 82.9
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 1.1e-44 184.5 199 47.2
Lsat_1_v5_gn_4_42240 Lactuca sativa HOM05D001108 ORTHO05D005418 4.3e-44 182.6 115 77.4
FAN08G2132 Fragaria x ananassa HOM05D001108 ORTHO05D005418 1.3e-40 171.0 88 96.6
HanXRQChr06g0169731 Helianthus annuus HOM05D001108 ORTHO05D005418 1.2e-38 164.5 97 83.5
CAN.G362.18 Capsicum annuum HOM05D001108 ORTHO05D005418 1.4e-31 141.0 222 40.5
Cfa014613 Carpinus fangiana HOM05D001108 ORTHO05D005418 2.3e-29 133.7 209 44.0
PRCOL_00001102 Prasinoderma coloniale HOM05D001108 ORTHO05D005418 4.5e-25 119.4 199 38.2
CAN.G248.14 Capsicum annuum HOM05D001108 ORTHO05D005418 7.6e-25 118.6 70 78.6
MCO11G757 Micromonas commoda HOM05D001108 ORTHO05D005418 1.3e-24 117.9 190 38.4
Cre06.g296600 Chlamydomonas reinhardtii HOM05D001108 ORTHO05D005418 2.2e-24 117.1 175 38.3
Ca_28725_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 2.7e-22 110.2 171 36.8
unitig_88.g27587 Utricularia gibba HOM05D001108 ORTHO05D005418 3.9e-21 106.3 123 52.0
Psat5g098840 Pisum sativum HOM05D001108 ORTHO05D005418 1.5e-20 104.4 149 47.0
RcHm_v2.0_Chr2g0153941 Rosa chinensis HOM05D001108 ORTHO05D005418 3.1e-18 96.7 111 53.2
AagrBONN_evm.TU.Sc2ySwM_228.459 Anthoceros agrestis HOM05D001108 ORTHO05D005418 1.1e-15 88.2 202 33.2
Psat5g097760 Pisum sativum HOM05D002292 ORTHO05D005418 4.2e-15 86.3 177 40.1
Medtr4g063470 Medicago truncatula HOM05D001108 ORTHO05D005418 2.3e-13 80.5 69 65.2
MBI06_g06479_MAGBIO Magnolia biondii HOM05D001108 ORTHO05D005418 1.4e-10 71.2 71 62.0
BolC9t54441H Brassica oleracea HOM05D001108 ORTHO05D005418 6.9e-10 68.9 38 86.8
Psat0s773g0040 Pisum sativum HOM05D001108 ORTHO05D005418 4.5e-09 66.2 157 33.8
Lsat_1_v5_gn_8_150060 Lactuca sativa HOM05D001108 ORTHO05D005418 5.9e-09 65.9 67 56.7


User provided reference genes

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