Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G2141 Fragaria x ananassa HOM05D000055 ORTHO05D012711 1.9e-39 165.2 77 100.0
FvH4_4g11041 Fragaria vesca HOM05D000055 ORTHO05D012711 4.8e-14 80.9 86 51.2
FvH4_4g11430 Fragaria vesca HOM05D000055 ORTHO05D012711 1.6e-09 65.9 36 77.8
FAN17G1093 Fragaria x ananassa HOM05D001125 ORTHO05D003189 2.7e-09 65.1 36 75.0
FAN20G0587 Fragaria x ananassa HOM05D000055 ORTHO05D002081 2.7e-09 65.1 36 75.0
Hma1.2p1_0690F.1_g203995 Hydrangea macrophylla HOM05D000055 ORTHO05D002081 2.7e-09 65.1 38 71.1
Hma1.2p1_0690F.1_g204030 Hydrangea macrophylla HOM05D000055 ORTHO05D002081 2.7e-09 65.1 38 71.1
MBI04_g06990_MAGBIO Magnolia biondii HOM05D000055 ORTHO05D002081 2.7e-09 65.1 36 77.8
FvH4_2g35180 Fragaria vesca HOM05D000055 ORTHO05D002081 3.6e-09 64.7 34 79.4
FAN15G0080 Fragaria x ananassa HOM05D000055 ORTHO05D002081 3.6e-09 64.7 34 79.4
FAN27G3368 Fragaria x ananassa HOM05D000055 ORTHO05D002081 3.6e-09 64.7 34 79.4
RcHm_v2.0_Chr6g0306761 Rosa chinensis HOM05D000055 ORTHO05D002081 3.6e-09 64.7 34 79.4
Sc23g0005470 Simmondsia chinensis HOM05D000055 ORTHO05D002081 3.6e-09 64.7 32 84.4
Atru.chr7.2045 Acer truncatum HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
Actinidia14691 Actinidia chinensis HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
Aqoxy7G01360 Aquilegia oxysepala HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
AL4G17710 Arabidopsis lyrata HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
AL4G17830 Arabidopsis lyrata HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
AL7G18900 Arabidopsis lyrata HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
AT2G25880 Arabidopsis thaliana HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
AT4G32830 Arabidopsis thaliana HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
arahy.Tifrunner.gnm1.ann1.A7WGR6 Arachis hypogaea HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
arahy.Tifrunner.gnm1.ann1.ZPV021 Arachis hypogaea HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
MSTRG.14038 Avicennia marina HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
MSTRG.1669 Avicennia marina HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
BcaB03g12765 Brassica carinata HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
BcaC09g52079 Brassica carinata HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
A01p05460 Brassica napus HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
A08p17880 Brassica napus HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
C01p06060 Brassica napus HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
C03p87000 Brassica napus HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
BolC1t00599H Brassica oleracea HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
BolC3t20995H Brassica oleracea HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
BraA01t00519Z Brassica rapa HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
BraA08t33740Z Brassica rapa HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
CSS0016670 Camellia sinensis var. sinensis HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
CANSAT11G2248 Cannabis sativa HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
Carub.0004s0570 Capsella rubella HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
Carub.0007s0766 Capsella rubella HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
CAN.G208.68 Capsicum annuum HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
CAN.G9.4 Capsicum annuum HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
CARHR115330 Cardamine hirsuta HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
CARHR240820 Cardamine hirsuta HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
Cpa.g.sc1868.3 Carica papaya HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
Cfa013389 Carpinus fangiana HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
CiPaw.07G201700 Carya illinoinensis HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
CiPaw.08G027700 Carya illinoinensis HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
Ca_15566_v3 Cicer arietinum L. HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
ClCG11G015020 Citrullus lanatus HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
Ciclev10009092m.g Citrus clementina HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
Cc00_g09230 Coffea canephora HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
COL.COLO4_21007 Corchorus olitorius HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
Haze_21931 Corylus avellana HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
MELO3C003476.2 Cucumis melo HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
CsaV3_3G048430 Cucumis sativus L. HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
Dinv23400 Davidia involucrata HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
Duzib150G0118 Durio zibethinus HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
Duzib168G2145 Durio zibethinus HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
ECA233G1087 Erigeron canadensis HOM05D001398 ORTHO05D001467 4.6e-09 64.3 32 84.4
Migut.A00174 Erythranthe guttata HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
Migut.E01546 Erythranthe guttata HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
Eucgr.C02987 Eucalyptus grandis HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
Thhalv10002057m.g Eutrema salsugineum HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
Thhalv10025883m.g Eutrema salsugineum HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
Glyma.04G087100 Glycine max HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
Glyma.06G088800 Glycine max HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
Gohir.A05G044900 Gossypium hirsutum HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
Gohir.A07G022192 Gossypium hirsutum HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
Gohir.D05G046600 Gossypium hirsutum HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
Gohir.D07G024100 Gossypium hirsutum HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
Gorai.001G024900 Gossypium raimondii HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
Gorai.009G047900 Gossypium raimondii HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
Hma1.2p1_0049F.1_g028245 Hydrangea macrophylla HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
Hma1.2p1_0690F.1_g204015 Hydrangea macrophylla HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
Lj8C566G1 Lonicera japonica HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
Lalb_Chr11g0064591 Lupinus albus HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
Lalb_Chr23g0269761 Lupinus albus HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
MD08G1109800 Malus domestica HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
MD15G1089300 Malus domestica HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
Manes.16G076400 Manihot esculenta HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
Medtr3g110405 Medicago truncatula HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
Nn8g39014 Nelumbo nucifera HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
Nitab4.5_0000318g0070 Nicotiana tabacum HOM05D000055 ORTHO05D002081 4.6e-09 64.3 37 75.7
Nitab4.5_0002021g0080 Nicotiana tabacum HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
Oeu038821.1 Olea europaea HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
Os01g0191800 Oryza sativa ssp. japonica HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
PSO063G2628 Papaver somniferum HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
PSO832G0733 Papaver somniferum HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
Peaxi162Scf00064g01525 Petunia axillaris HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
Peaxi162Scf00699g00653 Petunia axillaris HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
Psat5g018240 Pisum sativum HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
Potri.018G057700 Populus trichocarpa HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
Prupe.1G443900 Prunus persica HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
PGR044G2493 Punica granatum HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
QL12p040875 Quercus lobata HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
Rhsim07G0145100 Rhododendron simsii HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
Sabra06G0183400 Salix brachista HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
SalBow1G5477 Salvia bowleyana HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
Sp4g05720 Schrenkiella parvula HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
Sp7g30600 Schrenkiella parvula HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
Sed0000380 Sechium edule HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
Sed0004410 Sechium edule HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
SMO196G0030 Selaginella moellendorffii HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
Solyc08g066050.3 Solanum lycopersicum HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
Solyc12g095870.3 Solanum lycopersicum HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
Sopen08g019710 Solanum pennellii HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
Sopen12g031770 Solanum pennellii HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
PGSC0003DMG400025461 Solanum tuberosum HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
PGSC0003DMG400029392 Solanum tuberosum HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
SGA_v2.0_scaffold163G38049 Striga asiatica HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
SGA_v2.0_scaffold169G38672 Striga asiatica HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
THA.LOC104803801 Tarenaya hassleriana HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
THA.LOC104818594 Tarenaya hassleriana HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
Thecc.09G048900 Theobroma cacao HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
TPR.G12305 Trifolium pratense HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
TWI34G0679 Tripterygium wilfordii HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
TWI63G0622 Tripterygium wilfordii HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
TAR383G0249 Trochodendron aralioides HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
TAR636G0124 Trochodendron aralioides HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
vmacro05268 Vaccinium macrocarpon HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
VMungo1309G0959 Vigna mungo HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
GSVIVG01035323001 Vitis vinifera HOM05D000055 ORTHO05D002081 4.6e-09 64.3 32 84.4
Ah.10g034690 Amaranthus hybridus HOM05D000055 ORTHO05D002081 7.9e-09 63.5 32 81.2
Ah.11g044440 Amaranthus hybridus HOM05D000055 ORTHO05D002081 7.9e-09 63.5 32 81.2
EL10Ac2g03962 Beta vulgaris HOM05D000055 ORTHO05D002081 7.9e-09 63.5 32 81.2
BcaC07g39079 Brassica carinata HOM05D000055 ORTHO05D012711 7.9e-09 63.5 41 65.9
C08p20630 Brassica napus HOM05D000055 ORTHO05D012711 7.9e-09 63.5 41 65.9
AUR62009215 Chenopodium quinoa HOM05D000055 ORTHO05D002081 7.9e-09 63.5 32 81.2
AUR62040214 Chenopodium quinoa HOM05D000055 ORTHO05D002081 7.9e-09 63.5 32 81.2
FAN04G2652 Fragaria x ananassa HOM05D000055 ORTHO05D012711 7.9e-09 63.5 39 69.2
Hund19487 Selenicereus undatus HOM05D000055 ORTHO05D002081 7.9e-09 63.5 32 81.2
Zm00001eb121300 Zea mays HOM05D000055 ORTHO05D002081 7.9e-09 63.5 32 81.2
Zm00001eb337510 Zea mays HOM05D000055 ORTHO05D002081 7.9e-09 63.5 32 81.2
Aa31LG5G9800 Aethionema arabicum HOM05D000055 ORTHO05D002081 1.0e-08 63.2 32 81.2
Dinv27943 Davidia involucrata HOM05D000055 ORTHO05D002081 1.0e-08 63.2 32 81.2
PGR031G1971 Punica granatum HOM05D000055 ORTHO05D002081 1.0e-08 63.2 32 81.2
SalBow4G1705 Salvia bowleyana HOM05D000055 ORTHO05D002081 1.0e-08 63.2 32 81.2
HPP92_017450 Vanilla planifolia HOM05D000055 ORTHO05D002081 1.0e-08 63.2 32 81.2
Actinidia01215 Actinidia chinensis HOM05D000055 ORTHO05D002081 1.4e-08 62.8 32 81.2
Actinidia18209 Actinidia chinensis HOM05D000055 ORTHO05D012711 1.4e-08 62.8 32 81.2
ATR0705G186 Amborella trichopoda HOM05D000055 ORTHO05D002081 1.4e-08 62.8 41 68.3
DCAR_003071 Daucus carota HOM05D000055 ORTHO05D002081 1.4e-08 62.8 32 81.2
ECA246G2422 Erigeron canadensis HOM05D000055 ORTHO05D002081 1.4e-08 62.8 32 81.2
Lsat_1_v5_gn_3_27180 Lactuca sativa HOM05D000055 ORTHO05D002081 1.4e-08 62.8 32 81.2
Potri.006G235000 Populus trichocarpa HOM05D000055 ORTHO05D002081 1.4e-08 62.8 32 81.2
FvH4_2g11956 Fragaria vesca HOM05D000138 ORTHO05D045440 1.8e-08 62.4 36 75.0
Lsat_1_v5_gn_6_7700 Lactuca sativa HOM05D000055 ORTHO05D002081 1.8e-08 62.4 32 81.2
Lj8C566T5 Lonicera japonica HOM05D000055 ORTHO05D002081 1.8e-08 62.4 32 81.2
Nitab4.5_0001309g0040 Nicotiana tabacum HOM05D000055 ORTHO05D002081 1.8e-08 62.4 32 81.2
Nitab4.5_0001737g0040 Nicotiana tabacum HOM05D000055 ORTHO05D002081 1.8e-08 62.4 32 81.2
Phvul.009G112600 Phaseolus vulgaris HOM05D000055 ORTHO05D002081 1.8e-08 62.4 32 81.2
SEGI_15171 Sequoiadendron giganteum HOM05D000055 ORTHO05D002081 1.8e-08 62.4 32 81.2
HanXRQChr17g0538881 Helianthus annuus HOM05D000055 ORTHO05D002081 3.0e-08 61.6 32 78.1
Hund03373 Selenicereus undatus HOM05D000055 ORTHO05D002081 3.0e-08 61.6 32 78.1
TAR626G0999 Trochodendron aralioides HOM05D000055 ORTHO05D002081 3.0e-08 61.6 32 78.1
TAR626G1649 Trochodendron aralioides HOM05D000055 ORTHO05D002081 3.0e-08 61.6 32 78.1
FAN12G1901 Fragaria x ananassa HOM05D013944 ORTHO05D208954 3.9e-08 61.2 36 75.0
BolC8t49695H Brassica oleracea HOM05D000055 ORTHO05D012711 5.1e-08 60.8 37 67.6
CSS0005189 Camellia sinensis var. sinensis HOM05D000055 ORTHO05D002081 5.1e-08 60.8 32 78.1
CSS0019334 Camellia sinensis var. sinensis HOM05D000996 ORTHO05D002081 5.1e-08 60.8 32 78.1
HanXRQChr13g0404021 Helianthus annuus HOM05D000055 ORTHO05D002081 5.1e-08 60.8 32 78.1
CDE05G1396 Ceratophyllum demersum HOM05D000055 ORTHO05D002081 6.7e-08 60.5 32 75.0
CDE05G3399 Ceratophyllum demersum HOM05D000055 ORTHO05D002081 6.7e-08 60.5 32 75.0
FAN02G0785 Fragaria x ananassa HOM05D000055 ORTHO05D204237 6.7e-08 60.5 38 68.4
AagrBONN_evm.TU.Sc2ySwM_117.1997 Anthoceros agrestis HOM05D000055 ORTHO05D002081 8.8e-08 60.1 32 78.1
C05p44640 Brassica napus HOM05D000055 ORTHO05D012711 8.8e-08 60.1 42 61.9
Pp3c1_39350 Physcomitrium patens HOM05D000055 ORTHO05D002081 8.8e-08 60.1 32 78.1
Pp3c2_11870 Physcomitrium patens HOM05D000055 ORTHO05D002081 8.8e-08 60.1 32 78.1
FAN02G1887 Fragaria x ananassa HOM05D000055 ORTHO05D012711 1.1e-07 59.7 34 73.5
Lj1g0006867 Lotus japonicus HOM05D000055 ORTHO05D002081 1.1e-07 59.7 32 75.0
BcaC01g02735 Brassica carinata HOM05D000055 ORTHO05D012711 1.5e-07 59.3 37 67.6
FvH4_3g27500 Fragaria vesca HOM05D010408 ORTHO05D012711 2.0e-07 58.9 32 81.2
FAN09G2333 Fragaria x ananassa HOM05D001125 ORTHO05D003189 2.0e-07 58.9 38 71.1
Mapoly0081s0060 Marchantia polymorpha HOM05D000055 ORTHO05D002081 2.0e-07 58.9 32 75.0
BolC5t33192H Brassica oleracea HOM05D000055 ORTHO05D012711 2.6e-07 58.5 39 64.1
SEGI_38503 Sequoiadendron giganteum HOM05D000055 ORTHO05D002081 2.6e-07 58.5 32 71.9
SEGI_18356 Sequoiadendron giganteum HOM05D000055 ORTHO05D002081 4.4e-07 57.8 32 71.9
BolC5t33190H Brassica oleracea HOM05D000055 ORTHO05D012711 5.7e-07 57.4 39 64.1
FAN11G3288 Fragaria x ananassa HOM05D001720 ORTHO05D020624 7.4e-07 57.0 37 70.3
C03p61100 Brassica napus HOM05D000055 ORTHO05D012711 9.7e-07 56.6 33 69.7
BolC3t18373H Brassica oleracea HOM05D000055 ORTHO05D012711 9.7e-07 56.6 33 69.7
FAN05G1855 Fragaria x ananassa HOM05D001125 ORTHO05D003189 1.7e-06 55.8 38 68.4
FvH4_4g11000 Fragaria vesca HOM05D000055 ORTHO05D012711 2.8e-06 55.1 79 43.0


User provided reference genes

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