Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G2114 Fragaria x ananassa HOM05D012440 ORTHO05D009452 1.8e-226 788.9 398 100.0
FAN01G0827 Fragaria x ananassa HOM05D012440 ORTHO05D009452 8.6e-216 753.4 428 91.8
RcHm_v2.0_Chr2g0143311 Rosa chinensis HOM05D012440 ORTHO05D009452 7.2e-130 468.0 468 56.4
RcHm_v2.0_Chr2g0111771 Rosa chinensis HOM05D012440 ORTHO05D009452 3.5e-124 449.1 432 56.2
RcHm_v2.0_Chr6g0260911 Rosa chinensis HOM05D012440 ORTHO05D009452 3.3e-90 336.3 318 56.0
FAN19G2826 Fragaria x ananassa HOM05D012440 ORTHO05D009452 2.0e-79 300.4 163 96.9
FAN21G3607 Fragaria x ananassa HOM05D012440 ORTHO05D009452 2.0e-79 300.4 163 96.9
FAN06G4265 Fragaria x ananassa HOM05D012440 ORTHO05D009452 6.4e-78 295.4 162 95.7
RcHm_v2.0_Chr2g0127541 Rosa chinensis HOM05D008315 ORTHO05D009452 2.4e-77 293.5 272 58.1
FAN27G1488 Fragaria x ananassa HOM05D012440 ORTHO05D009452 3.9e-75 286.2 156 98.1
FAN22G0307 Fragaria x ananassa HOM05D012440 ORTHO05D009452 1.1e-69 268.1 144 98.6
FAN23G0323 Fragaria x ananassa HOM05D012440 ORTHO05D009452 2.3e-59 233.8 196 61.7
FAN03G0559 Fragaria x ananassa HOM05D012440 ORTHO05D009452 2.1e-36 157.5 156 57.7
RcHm_v2.0_Chr7g0184951 Rosa chinensis HOM05D008315 ORTHO05D009452 7.9e-36 155.6 370 32.7
FAN14G2954 Fragaria x ananassa HOM05D008315 ORTHO05D009452 2.3e-35 154.1 364 30.5
FAN08G2751 Fragaria x ananassa HOM05D008315 ORTHO05D009452 1.5e-34 151.4 389 28.3
RcHm_v2.0_Chr2g0136581 Rosa chinensis HOM05D008315 ORTHO05D009452 9.7e-34 148.7 337 32.6
FAN08G1914 Fragaria x ananassa HOM05D008315 ORTHO05D009452 1.7e-33 147.9 364 29.9
RcHm_v2.0_Chr2g0145131 Rosa chinensis HOM05D008315 ORTHO05D009452 1.7e-33 147.9 388 29.6
FAN03G0562 Fragaria x ananassa HOM05D008315 ORTHO05D009452 5.3e-32 142.9 346 30.9
FAN25G1520 Fragaria x ananassa HOM05D008315 ORTHO05D009452 5.3e-32 142.9 390 27.9
FAN14G0707 Fragaria x ananassa HOM05D008315 ORTHO05D009452 1.4e-29 134.8 384 28.4
FAN10G3967 Fragaria x ananassa HOM05D008315 ORTHO05D009452 3.2e-29 133.7 333 31.2
RcHm_v2.0_Chr7g0237841 Rosa chinensis HOM05D009706 ORTHO05D009452 2.1e-28 131.0 383 29.5
RcHm_v2.0_Chr7g0201721 Rosa chinensis HOM05D008315 ORTHO05D009452 3.9e-27 126.7 189 37.0
RcHm_v2.0_Chr2g0095801 Rosa chinensis HOM05D008315 ORTHO05D009452 6.7e-27 125.9 368 26.6
FAN24G1602 Fragaria x ananassa HOM05D008315 ORTHO05D009452 1.3e-25 121.7 364 27.2
RcHm_v2.0_Chr4g0435991 Rosa chinensis HOM05D009706 ORTHO05D009452 8.2e-25 119.0 316 28.8
FAN05G5299 Fragaria x ananassa HOM05D009706 ORTHO05D009452 5.3e-24 116.3 328 28.0
FAN09G2320 Fragaria x ananassa HOM05D000769 ORTHO05D003127 5.3e-24 116.3 77 76.6
FvH4_4g00092 Fragaria vesca HOM05D008315 ORTHO05D009452 2.9e-22 110.5 277 28.9
MD08G1234800 Malus domestica HOM05D008315 ORTHO05D009452 3.8e-22 110.2 282 27.3
FvH4_2g21543 Fragaria vesca HOM05D008315 ORTHO05D009452 5.0e-22 109.8 297 29.6
FvH4_6g11351 Fragaria vesca HOM05D008315 ORTHO05D009452 1.5e-21 108.2 303 29.0
FAN27G0213 Fragaria x ananassa HOM05D009706 ORTHO05D009452 2.7e-20 104.0 291 28.5
FAN05G2530 Fragaria x ananassa HOM05D009706 ORTHO05D009452 3.6e-20 103.6 302 27.5
FAN22G1488 Fragaria x ananassa HOM05D008315 ORTHO05D009452 4.7e-20 103.2 290 29.0
FAN02G2771 Fragaria x ananassa HOM05D009706 ORTHO05D009452 1.0e-19 102.1 319 27.0
RcHm_v2.0_Chr5g0039211 Rosa chinensis HOM05D008315 ORTHO05D009452 1.4e-19 101.7 118 42.4
FvH4_3g32800 Fragaria vesca HOM05D009706 ORTHO05D009452 3.0e-19 100.5 319 28.2
FAN04G1611 Fragaria x ananassa HOM05D008315 ORTHO05D009452 6.7e-19 99.4 345 26.7
RcHm_v2.0_Chr3g0481961 Rosa chinensis HOM05D008315 ORTHO05D009452 2.0e-18 97.8 136 36.8
FAN05G2961 Fragaria x ananassa HOM05D012440 ORTHO05D009452 1.7e-17 94.7 101 56.4
RcHm_v2.0_Chr3g0468771 Rosa chinensis HOM05D009706 ORTHO05D009452 3.7e-17 93.6 245 28.6
FAN13G2460 Fragaria x ananassa HOM05D000534 ORTHO05D000389 1.4e-16 91.7 228 30.3
RcHm_v2.0_Chr6g0254441 Rosa chinensis HOM05D008315 ORTHO05D009452 1.6e-15 88.2 221 31.7
RcHm_v2.0_Chr2g0151391 Rosa chinensis HOM05D008315 ORTHO05D009452 2.7e-15 87.4 180 29.4
PGR044G2317 Punica granatum HOM05D001309 ORTHO05D000385 5.5e-13 79.7 239 28.0
MD03G1101500 Malus domestica HOM05D008315 ORTHO05D009452 3.6e-12 77.0 91 45.1
Hma1.2p1_0154F.1_g068115 Hydrangea macrophylla HOM05D008315 ORTHO05D009452 4.7e-12 76.6 322 25.2
Hma1.2p1_0160F.1_g070785 Hydrangea macrophylla HOM05D008315 ORTHO05D009452 4.7e-12 76.6 322 25.2
FAN22G1440 Fragaria x ananassa HOM05D008315 ORTHO05D009452 1.8e-11 74.7 153 32.7
FAN05G1217 Fragaria x ananassa HOM05D008315 ORTHO05D009452 3.0e-11 73.9 226 26.1
FAN08G0992 Fragaria x ananassa HOM05D008315 ORTHO05D009452 5.2e-11 73.2 201 29.4
FvH4_2g00150 Fragaria vesca HOM05D008315 ORTHO05D009452 8.8e-11 72.4 360 23.9
FAN13G1770 Fragaria x ananassa HOM05D012440 ORTHO05D009452 3.7e-09 67.0 187 34.8
Dinv19412 Davidia involucrata HOM05D001309 ORTHO05D005970 3.1e-08 63.9 296 24.7
TAR365G0123 Trochodendron aralioides HOM05D001309 ORTHO05D000385 5.4e-08 63.2 316 25.0
TAR369G0367 Trochodendron aralioides HOM05D001309 ORTHO05D000385 5.4e-08 63.2 316 25.0
TAR629G2892 Trochodendron aralioides HOM05D001309 ORTHO05D000385 1.2e-07 62.0 226 22.6
RcHm_v2.0_Chr4g0393741 Rosa chinensis HOM05D008315 ORTHO05D009452 1.6e-07 61.6 173 30.6
TAR365G0008 Trochodendron aralioides HOM05D001163 ORTHO05D001769 1.6e-07 61.6 306 25.2
MD15G1288300 Malus domestica HOM05D027729 ORTHO05D009452 2.7e-07 60.8 264 24.2
TAR622G0651 Trochodendron aralioides HOM05D000141 ORTHO05D000385 3.5e-07 60.5 316 24.7
MD02G1315300 Malus domestica HOM05D008315 ORTHO05D009452 4.5e-07 60.1 322 23.6
CSS0016301 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 5.9e-07 59.7 263 24.3
CSS0030327 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 5.9e-07 59.7 263 24.3
MBI09_g15192_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 5.9e-07 59.7 232 25.9
RcHm_v2.0_Chr4g0397391 Rosa chinensis HOM05D008315 ORTHO05D009452 7.7e-07 59.3 218 24.8
RcHm_v2.0_Chr5g0015951 Rosa chinensis HOM05D008315 ORTHO05D009452 1.3e-06 58.5 154 27.9
FAN24G3308 Fragaria x ananassa HOM05D008315 ORTHO05D009452 1.7e-06 58.2 295 26.1
RcHm_v2.0_Chr7g0201731 Rosa chinensis HOM05D008315 ORTHO05D009452 2.2e-06 57.8 141 34.8
TAR344G0001 Trochodendron aralioides HOM05D001309 ORTHO05D000385 2.2e-06 57.8 311 22.8
CSS0014937 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 3.8e-06 57.0 262 24.8
CSS0018077 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 6.5e-06 56.2 290 23.8


User provided reference genes

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