Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G2106 Fragaria x ananassa HOM05D004399 ORTHO05D005303 3.9e-37 157.5 75 100.0
FAN17G2847 Fragaria x ananassa HOM05D004399 ORTHO05D005303 2.9e-32 141.4 75 92.0
FAN22G0874 Fragaria x ananassa HOM05D004399 ORTHO05D005303 2.9e-32 141.4 75 92.0
FvH4_4g29830 Fragaria vesca HOM05D004399 ORTHO05D005303 1.1e-31 139.4 75 90.7
RcHm_v2.0_Chr4g0438081 Rosa chinensis HOM05D004399 ORTHO05D005303 1.1e-31 139.4 75 90.7
Psat3g063920 Pisum sativum HOM05D004399 ORTHO05D005303 4.2e-31 137.5 75 88.0
Medtr4g094990 Medicago truncatula HOM05D004399 ORTHO05D005303 5.5e-31 137.1 75 86.7
FAN12G0059 Fragaria x ananassa HOM05D004399 ORTHO05D005303 1.2e-30 136.0 75 89.3
MD16G1059800 Malus domestica HOM05D004399 ORTHO05D005303 1.6e-30 135.6 75 88.0
Lj1g0019699 Lotus japonicus HOM05D004399 ORTHO05D005303 2.1e-30 135.2 75 85.3
Glyma.16G032800 Glycine max HOM05D004399 ORTHO05D005303 2.7e-30 134.8 75 85.3
Ca_08608_v3 Cicer arietinum L. HOM05D004399 ORTHO05D005303 3.6e-30 134.4 75 85.3
Nn3g17119 Nelumbo nucifera HOM05D004399 ORTHO05D005303 3.6e-30 134.4 75 85.3
MD13G1060600 Malus domestica HOM05D004399 ORTHO05D005303 4.7e-30 134.0 75 86.7
MD13G1061300 Malus domestica HOM05D004399 ORTHO05D005303 4.7e-30 134.0 75 86.7
Medtr4g094998 Medicago truncatula HOM05D004399 ORTHO05D005303 4.7e-30 134.0 75 84.0
Prupe.1G288800 Prunus persica HOM05D004399 ORTHO05D005303 4.7e-30 134.0 75 86.7
Phvul.010G102900 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 6.1e-30 133.7 75 84.0
Ah.03g138840 Amaranthus hybridus HOM05D004399 ORTHO05D005303 7.9e-30 133.3 75 84.0
COL.COLO4_27864 Corchorus olitorius HOM05D004399 ORTHO05D005303 7.9e-30 133.3 75 85.3
Potri.008G097100 Populus trichocarpa HOM05D004399 ORTHO05D005303 7.9e-30 133.3 75 85.3
Sabra08G0073300 Salix brachista HOM05D004399 ORTHO05D005303 7.9e-30 133.3 75 85.3
Lsat_1_v5_gn_8_46460 Lactuca sativa HOM05D004399 ORTHO05D005303 1.0e-29 132.9 75 85.3
Medtr7g095060 Medicago truncatula HOM05D004399 ORTHO05D005303 1.0e-29 132.9 75 84.0
PSO017G5651 Papaver somniferum HOM05D004399 ORTHO05D005303 1.0e-29 132.9 75 84.0
Aqoxy3G03260 Aquilegia oxysepala HOM05D004399 ORTHO05D005303 1.4e-29 132.5 75 84.0
HanXRQChr12g0363151 Helianthus annuus HOM05D004399 ORTHO05D005303 1.4e-29 132.5 75 84.0
Lalb_Chr17g0341271 Lupinus albus HOM05D004399 ORTHO05D005303 1.4e-29 132.5 75 84.0
Potri.010G157500 Populus trichocarpa HOM05D004399 ORTHO05D005303 1.4e-29 132.5 75 85.3
CANSAT64G2641 Cannabis sativa HOM05D004399 ORTHO05D005303 1.8e-29 132.1 75 85.3
Ca_25695_v3 Cicer arietinum L. HOM05D004399 ORTHO05D005303 1.8e-29 132.1 75 84.0
vmacro10433 Vaccinium macrocarpon HOM05D004399 ORTHO05D005303 1.8e-29 132.1 75 84.0
GSVIVG01000552001 Vitis vinifera HOM05D004399 ORTHO05D005303 1.8e-29 132.1 75 82.7
EL10Ac6g15013 Beta vulgaris HOM05D004399 ORTHO05D005303 2.3e-29 131.7 75 84.0
Dinv34060 Davidia involucrata HOM05D004399 ORTHO05D005303 2.3e-29 131.7 75 84.0
Manes.05G109300 Manihot esculenta HOM05D004399 ORTHO05D005303 2.3e-29 131.7 75 84.0
Eucgr.B03145 Eucalyptus grandis HOM05D004399 ORTHO05D005303 3.0e-29 131.3 75 84.0
Gohir.A03G104700 Gossypium hirsutum HOM05D004399 ORTHO05D005303 3.0e-29 131.3 75 82.7
arahy.Tifrunner.gnm1.ann1.E76E6E Arachis hypogaea HOM05D004399 ORTHO05D005303 3.9e-29 131.0 75 84.0
arahy.Tifrunner.gnm1.ann1.MJW4NY Arachis hypogaea HOM05D004399 ORTHO05D005303 3.9e-29 131.0 75 84.0
Lj6A777T47 Lonicera japonica HOM05D004399 ORTHO05D005303 3.9e-29 131.0 74 83.8
Nn4g24779 Nelumbo nucifera HOM05D004399 ORTHO05D005303 3.9e-29 131.0 75 84.0
TAR622G1336 Trochodendron aralioides HOM05D004399 ORTHO05D005303 3.9e-29 131.0 75 82.7
VMungo0331G0538 Vigna mungo HOM05D004399 ORTHO05D005303 3.9e-29 131.0 75 81.3
CANSAT11G0637 Cannabis sativa HOM05D004399 ORTHO05D005303 5.1e-29 130.6 75 84.0
ECA233G2368 Erigeron canadensis HOM05D004399 ORTHO05D005303 5.1e-29 130.6 75 84.0
Lj3C1029T7 Lonicera japonica HOM05D004399 ORTHO05D005303 5.1e-29 130.6 74 85.1
THA.LOC104805201 Tarenaya hassleriana HOM05D004399 ORTHO05D005303 5.1e-29 130.6 75 82.7
MSTRG.7738 Avicennia marina HOM05D004399 ORTHO05D005303 6.7e-29 130.2 75 84.0
Cpa.g.sc1.139 Carica papaya HOM05D004399 ORTHO05D005303 6.7e-29 130.2 75 81.3
Sc11g0002530 Simmondsia chinensis HOM05D004399 ORTHO05D005303 6.7e-29 130.2 75 82.7
Thecc.02G328800 Theobroma cacao HOM05D004399 ORTHO05D005303 6.7e-29 130.2 75 82.7
Glyma.07G066700 Glycine max HOM05D004399 ORTHO05D005303 8.8e-29 129.8 75 82.7
PGSC0003DMG402028313 Solanum tuberosum HOM05D004399 ORTHO05D005303 8.8e-29 129.8 75 82.7
CSS0044473 Camellia sinensis var. sinensis HOM05D004399 ORTHO05D005303 1.1e-28 129.4 75 81.3
Solyc05g012150.4 Solanum lycopersicum HOM05D004399 ORTHO05D005303 1.1e-28 129.4 75 82.7
CiPaw.05G124200 Carya illinoinensis HOM05D004399 ORTHO05D005303 1.5e-28 129.0 75 81.3
PSO832G2862 Papaver somniferum HOM05D004399 ORTHO05D005303 1.5e-28 129.0 75 81.3
QL03p073920 Quercus lobata HOM05D004399 ORTHO05D005303 1.5e-28 129.0 75 82.7
AUR62003087 Chenopodium quinoa HOM05D004399 ORTHO05D005303 2.0e-28 128.6 75 81.3
Migut.L01179 Erythranthe guttata HOM05D004399 ORTHO05D005303 2.0e-28 128.6 75 82.7
Hund05832 Selenicereus undatus HOM05D004399 ORTHO05D005303 2.0e-28 128.6 75 81.3
Ah.02g126810 Amaranthus hybridus HOM05D004399 ORTHO05D005303 2.6e-28 128.3 75 81.3
Aqoxy4G03091 Aquilegia oxysepala HOM05D004399 ORTHO05D005303 2.6e-28 128.3 75 80.0
Duzib251G0565 Durio zibethinus HOM05D004399 ORTHO05D005303 2.6e-28 128.3 75 81.3
SalBow4G1206 Salvia bowleyana HOM05D004399 ORTHO05D005303 2.6e-28 128.3 75 80.0
TWI75G0511 Tripterygium wilfordii HOM05D004399 ORTHO05D005303 2.6e-28 128.3 75 80.0
CDE02G0376 Ceratophyllum demersum HOM05D004399 ORTHO05D005303 3.3e-28 127.9 75 80.0
PGR083G0959 Punica granatum HOM05D004399 ORTHO05D005303 3.3e-28 127.9 75 81.3
CAN.G707.11 Capsicum annuum HOM05D004399 ORTHO05D005303 4.4e-28 127.5 75 81.3
AUR62007904 Chenopodium quinoa HOM05D004399 ORTHO05D005303 4.4e-28 127.5 75 80.0
Peaxi162Scf00175g00428 Petunia axillaris HOM05D004399 ORTHO05D005303 4.4e-28 127.5 75 81.3
Sopen05g006940 Solanum pennellii HOM05D004399 ORTHO05D005303 4.4e-28 127.5 75 81.3
SGA_v2.0_scaffold16G07803 Striga asiatica HOM05D004399 ORTHO05D005303 4.4e-28 127.5 75 80.0
BcaC03g17230 Brassica carinata HOM05D004399 ORTHO05D005303 5.7e-28 127.1 74 82.4
BolC2t11249H Brassica oleracea HOM05D004399 ORTHO05D005303 5.7e-28 127.1 74 82.4
DCAR_024127 Daucus carota HOM05D004399 ORTHO05D005303 5.7e-28 127.1 74 82.4
Gorai.005G145900 Gossypium raimondii HOM05D004399 ORTHO05D005303 5.7e-28 127.1 74 81.1
Rhsim09G0126300 Rhododendron simsii HOM05D004399 ORTHO05D005303 5.7e-28 127.1 88 71.6
A06p42990 Brassica napus HOM05D004399 ORTHO05D005303 7.4e-28 126.7 74 82.4
Cc06_g15640 Coffea canephora HOM05D004399 ORTHO05D005303 7.4e-28 126.7 75 78.7
Ciclev10032681m.g Citrus clementina HOM05D004399 ORTHO05D005303 9.7e-28 126.3 75 81.3
unitig_8.g3180 Utricularia gibba HOM05D004399 ORTHO05D005303 9.7e-28 126.3 75 82.7
Aa31LG2G6990 Aethionema arabicum HOM05D004399 ORTHO05D005303 1.3e-27 125.9 74 79.7
BcaB07g30287 Brassica carinata HOM05D004399 ORTHO05D005303 1.3e-27 125.9 74 81.1
A02p33520 Brassica napus HOM05D004399 ORTHO05D005303 1.3e-27 125.9 74 81.1
DCAR_026680 Daucus carota HOM05D004399 ORTHO05D005303 1.3e-27 125.9 75 80.0
HanXRQChr08g0211681 Helianthus annuus HOM05D004399 ORTHO05D005303 1.3e-27 125.9 75 80.0
BcaC06g31162 Brassica carinata HOM05D004399 ORTHO05D005303 1.7e-27 125.6 74 81.1
BcaC06g31172 Brassica carinata HOM05D004399 ORTHO05D005303 1.7e-27 125.6 74 81.1
C07p34040 Brassica napus HOM05D004399 ORTHO05D005303 1.7e-27 125.6 74 81.1
BolC7t43918H Brassica oleracea HOM05D004399 ORTHO05D005303 1.7e-27 125.6 74 81.1
MBI14_g37191_MAGBIO Magnolia biondii HOM05D004399 ORTHO05D005303 1.7e-27 125.6 75 80.0
C02p51640 Brassica napus HOM05D004399 ORTHO05D005303 2.2e-27 125.2 74 81.1
CDE04G3031 Ceratophyllum demersum HOM05D004399 ORTHO05D005303 2.2e-27 125.2 75 78.7
Thhalv10004874m.g Eutrema salsugineum HOM05D004399 ORTHO05D005303 2.8e-27 124.8 74 79.7
Gohir.D02G129900 Gossypium hirsutum HOM05D004399 ORTHO05D005303 2.8e-27 124.8 74 79.7
Atru.chr11.1611 Acer truncatum HOM05D004399 ORTHO05D005303 3.7e-27 124.4 75 80.0
Hma1.2p1_0566F.1_g179870 Hydrangea macrophylla HOM05D004399 ORTHO05D005303 3.7e-27 124.4 75 78.7
Nitab4.5_0000231g0090 Nicotiana tabacum HOM05D004399 ORTHO05D005303 3.7e-27 124.4 65 89.2
Sp2g14510 Schrenkiella parvula HOM05D004399 ORTHO05D005303 3.7e-27 124.4 74 79.7
AL5G13480 Arabidopsis lyrata HOM05D004399 ORTHO05D005303 4.8e-27 124.0 74 81.1
AT2G03690 Arabidopsis thaliana HOM05D004399 ORTHO05D005303 4.8e-27 124.0 74 81.1
AL5G13460 Arabidopsis lyrata HOM05D004399 ORTHO05D005303 6.3e-27 123.6 74 81.1
Carub.0005s0281 Capsella rubella HOM05D004399 ORTHO05D005303 6.3e-27 123.6 74 81.1
Nitab4.5_0007061g0010 Nicotiana tabacum HOM05D004399 ORTHO05D005303 1.4e-26 122.5 74 79.7
PSO478G0010 Papaver somniferum HOM05D004399 ORTHO05D005303 1.4e-26 122.5 74 77.0
Zm00001eb433530 Zea mays HOM05D004399 ORTHO05D005303 1.8e-26 122.1 75 76.0
Os04g0674200 Oryza sativa ssp. japonica HOM05D004399 ORTHO05D005303 2.4e-26 121.7 75 76.0
SalBow2G2941 Salvia bowleyana HOM05D004399 ORTHO05D005303 3.1e-26 121.3 65 84.6
CARHR146010 Cardamine hirsuta HOM05D004399 ORTHO05D005303 4.1e-26 120.9 74 78.4
CsaV3_6G033760 Cucumis sativus L. HOM05D004399 ORTHO05D005303 4.1e-26 120.9 75 74.7
MELO3C011412.2 Cucumis melo HOM05D004399 ORTHO05D005303 5.3e-26 120.6 75 74.7
Oeu031535.3 Olea europaea HOM05D004399 ORTHO05D005303 5.3e-26 120.6 65 84.6
Os05g0188800 Oryza sativa ssp. japonica HOM05D004399 ORTHO05D005303 7.0e-26 120.2 75 74.7
SalBow4G2688 Salvia bowleyana HOM05D004399 ORTHO05D005303 7.0e-26 120.2 65 84.6
Cfa008867 Carpinus fangiana HOM05D004399 ORTHO05D005303 1.2e-25 119.4 75 77.3
Haze_11894 Corylus avellana HOM05D004399 ORTHO05D005303 1.2e-25 119.4 75 77.3
Pp3c2_220 Physcomitrium patens HOM05D004399 ORTHO05D005303 1.2e-25 119.4 75 72.0
ClCG08G010510 Citrullus lanatus HOM05D004399 ORTHO05D005303 1.5e-25 119.0 75 74.7
SEGI_29941 Sequoiadendron giganteum HOM05D004399 ORTHO05D005303 2.0e-25 118.6 75 73.3
Mapoly0124s0026 Marchantia polymorpha HOM05D004399 ORTHO05D005303 5.9e-25 117.1 75 72.0
SalBow4G1336 Salvia bowleyana HOM05D004399 ORTHO05D005303 7.7e-25 116.7 65 81.5
AagrBONN_evm.TU.Sc2ySwM_368.1886 Anthoceros agrestis HOM05D004399 ORTHO05D005303 1.7e-24 115.5 75 73.3
Sed0000590 Sechium edule HOM05D004399 ORTHO05D005303 1.7e-24 115.5 75 70.7
SalBow4G1060 Salvia bowleyana HOM05D004399 ORTHO05D005303 2.9e-24 114.8 64 81.2
SMO196G0238 Selaginella moellendorffii HOM05D004399 ORTHO05D005303 3.8e-24 114.4 75 70.7
TPR.G30910 Trifolium pratense HOM05D004399 ORTHO05D005303 5.0e-24 114.0 59 88.1
Sed0002833 Sechium edule HOM05D004399 ORTHO05D005303 8.5e-24 113.2 75 69.3
ATR1120G108 Amborella trichopoda HOM05D004399 ORTHO05D005303 1.4e-23 112.5 68 73.5
Sed0017877 Sechium edule HOM05D004399 ORTHO05D005303 1.9e-23 112.1 65 75.4
SMO187G0002 Selaginella moellendorffii HOM05D004399 ORTHO05D005303 1.6e-22 109.0 75 66.7
TPR.G29232 Trifolium pratense HOM05D004399 ORTHO05D005303 1.0e-21 106.3 75 73.3
AUR62019674 Chenopodium quinoa HOM05D004399 ORTHO05D005303 1.1e-20 102.8 58 81.0
BcaB07g30659 Brassica carinata HOM05D004399 ORTHO05D005303 7.4e-20 100.1 63 73.0
CBR_g38753 Chara braunii HOM05D004399 ORTHO05D001303 9.7e-20 99.8 75 62.7
HanXRQChr01g0013031 Helianthus annuus HOM05D004399 ORTHO05D005303 1.7e-16 89.0 54 77.8
vmacro20929 Vaccinium macrocarpon HOM05D004399 ORTHO05D005303 3.8e-16 87.8 74 60.8
Cre03.g154850 Chlamydomonas reinhardtii HOM05D004399 ORTHO05D005303 4.2e-15 84.3 74 51.4
MCO10G350 Micromonas commoda HOM05D004399 ORTHO05D005303 4.2e-15 84.3 74 52.7
TPR.G35678 Trifolium pratense HOM05D004399 ORTHO05D005303 4.4e-12 74.3 35 94.3
HanXRQChr10g0298331 Helianthus annuus HOM05D004399 ORTHO05D005303 5.7e-12 73.9 35 94.3
PRCOL_00001738 Prasinoderma coloniale HOM05D004399 ORTHO05D005303 2.8e-11 71.6 75 49.3
FAN08G1770 Fragaria x ananassa HOM05D004399 ORTHO05D005303 1.2e-09 66.2 31 93.5
Actinidia12918 Actinidia chinensis HOM05D004399 ORTHO05D005303 4.2e-07 57.8 53 56.6
A09p24540 Brassica napus HOM05D004399 ORTHO05D005303 4.2e-07 57.8 38 65.8
HanXRQChr13g0414251 Helianthus annuus HOM05D004399 ORTHO05D005303 4.7e-06 54.3 44 63.6


User provided reference genes

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