Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G2059 Fragaria x ananassa HOM05D007727 ORTHO05D009078 1.2e-62 243.0 125 100.0
FAN08G2749 Fragaria x ananassa HOM05D007727 ORTHO05D009078 1.1e-60 236.5 123 98.4
FvH4_5g04620 Fragaria vesca HOM05D007727 ORTHO05D009078 2.5e-60 235.3 123 97.6
FAN18G4426 Fragaria x ananassa HOM05D007727 ORTHO05D009078 2.5e-60 235.3 123 97.6
FAN13G2104 Fragaria x ananassa HOM05D007727 ORTHO05D009078 3.2e-60 235.0 124 98.4
FAN13G3265 Fragaria x ananassa HOM05D007727 ORTHO05D009078 3.2e-60 235.0 124 98.4
FAN18G0179 Fragaria x ananassa HOM05D007727 ORTHO05D009078 2.7e-59 231.9 123 95.9
Prupe.5G120300 Prunus persica HOM05D007727 ORTHO05D009078 1.8e-26 122.9 136 53.7
Potri.001G091400 Populus trichocarpa HOM05D007727 ORTHO05D009078 5.8e-17 91.3 121 45.5
Dinv38830 Davidia involucrata HOM05D007727 ORTHO05D009078 7.5e-17 90.9 135 43.7
Manes.02G009800 Manihot esculenta HOM05D007727 ORTHO05D009078 3.7e-16 88.6 100 52.0
Gorai.004G133300 Gossypium raimondii HOM05D007727 ORTHO05D009078 8.3e-16 87.4 98 50.0
Gohir.A08G103450 Gossypium hirsutum HOM05D007727 ORTHO05D009078 1.1e-15 87.0 108 46.3
Gohir.D08G130400 Gossypium hirsutum HOM05D007727 ORTHO05D009078 1.1e-15 87.0 98 50.0
Duzib205G0888 Durio zibethinus HOM05D007727 ORTHO05D009078 1.4e-15 86.7 125 43.2
VMungo1215G2373 Vigna mungo HOM05D007727 ORTHO05D009078 1.9e-15 86.3 130 43.1
Hma1.2p1_1461F.1_g285070 Hydrangea macrophylla HOM05D007727 ORTHO05D009078 3.2e-15 85.5 126 42.9
CSS0019090 Camellia sinensis var. sinensis HOM05D007727 ORTHO05D009078 7.0e-15 84.3 137 42.3
Hma1.2p1_1746F.1_g300420 Hydrangea macrophylla HOM05D007727 ORTHO05D009078 7.0e-15 84.3 130 42.3
Haze_09065 Corylus avellana HOM05D007727 ORTHO05D009078 9.2e-15 84.0 123 43.1
CANSAT21G1217 Cannabis sativa HOM05D007727 ORTHO05D009078 1.2e-14 83.6 149 40.3
Potri.003G140200 Populus trichocarpa HOM05D007727 ORTHO05D009078 1.2e-14 83.6 125 47.2
Potri.003G140233 Populus trichocarpa HOM05D007727 ORTHO05D009078 1.2e-14 83.6 125 47.2
Sabra01G0067800 Salix brachista HOM05D007727 ORTHO05D009078 2.1e-14 82.8 121 43.0
Cfa012003 Carpinus fangiana HOM05D007727 ORTHO05D009078 2.7e-14 82.4 128 43.0
Cfa012008 Carpinus fangiana HOM05D007727 ORTHO05D009078 2.7e-14 82.4 128 43.0
LjContig00312_ERROPOS870357g0016151 Lotus japonicus HOM05D007727 ORTHO05D009078 2.7e-14 82.4 99 46.5
Potri.004G151000 Populus trichocarpa HOM05D007727 ORTHO05D009078 3.5e-14 82.0 123 43.9
Glyma.08G023200 Glycine max HOM05D007727 ORTHO05D009078 4.6e-14 81.6 137 38.7
COL.COLO4_10705 Corchorus olitorius HOM05D007727 ORTHO05D009078 6.0e-14 81.3 124 41.1
Potri.003G140266 Populus trichocarpa HOM05D007727 ORTHO05D009078 7.8e-14 80.9 112 49.1
Thecc.03G298300 Theobroma cacao HOM05D007727 ORTHO05D009078 7.8e-14 80.9 95 49.5
Glyma.11G017500 Glycine max HOM05D007727 ORTHO05D009078 1.0e-13 80.5 130 41.5
Phvul.002G164400 Phaseolus vulgaris HOM05D007727 ORTHO05D009078 1.3e-13 80.1 126 42.9
CiPaw.11G121100 Carya illinoinensis HOM05D007727 ORTHO05D009078 2.3e-13 79.3 122 45.9
Rhsim02G0243900 Rhododendron simsii HOM05D007727 ORTHO05D009078 3.9e-13 78.6 129 39.5
CiPaw.12G082800 Carya illinoinensis HOM05D007727 ORTHO05D009078 5.1e-13 78.2 134 45.5
Sabra01G0067700 Salix brachista HOM05D007727 ORTHO05D009078 5.1e-13 78.2 121 41.3
ClCG07G011610 Citrullus lanatus HOM05D007727 ORTHO05D009078 6.6e-13 77.8 125 43.2
Glyma.01G225500 Glycine max HOM05D007727 ORTHO05D009078 6.6e-13 77.8 104 48.1
Glyma.05G216900 Glycine max HOM05D007727 ORTHO05D009078 6.6e-13 77.8 122 37.7
CiPaw.12G082600 Carya illinoinensis HOM05D007727 ORTHO05D009078 8.6e-13 77.4 133 45.9
QL02p030408 Quercus lobata HOM05D007727 ORTHO05D009078 1.9e-12 76.3 102 49.0
Rhsim02G0244000 Rhododendron simsii HOM05D007727 ORTHO05D009078 3.3e-12 75.5 129 38.8
Cfa012009 Carpinus fangiana HOM05D007727 ORTHO05D009078 4.3e-12 75.1 103 46.6
Haze_09064 Corylus avellana HOM05D007727 ORTHO05D009078 7.3e-12 74.3 130 41.5
QL02p030393 Quercus lobata HOM05D007727 ORTHO05D009078 7.3e-12 74.3 102 48.0
Lalb_Chr05g0224131 Lupinus albus HOM05D007727 ORTHO05D009078 1.2e-11 73.6 134 37.3
Oeu031673.1 Olea europaea HOM05D007727 ORTHO05D009078 1.6e-11 73.2 114 42.1
Glyma.05G217200 Glycine max HOM05D007727 ORTHO05D009078 2.8e-11 72.4 132 36.4
MELO3C016295.2 Cucumis melo HOM05D007727 ORTHO05D009078 4.7e-11 71.6 136 40.4
Eucgr.D01744 Eucalyptus grandis HOM05D007727 ORTHO05D009078 4.7e-11 71.6 91 46.2
QL02p030384 Quercus lobata HOM05D007727 ORTHO05D009078 4.7e-11 71.6 101 48.5
QL02p030389 Quercus lobata HOM05D007727 ORTHO05D009078 6.2e-11 71.2 111 44.1
Rhsim02G0243700 Rhododendron simsii HOM05D007727 ORTHO05D009078 6.2e-11 71.2 123 39.0
Gohir.A02G100000 Gossypium hirsutum HOM05D007727 ORTHO05D009078 1.1e-10 70.5 124 39.5
Oeu031672.1 Olea europaea HOM05D007727 ORTHO05D009078 1.1e-10 70.5 117 40.2
Rhsim02G0243800 Rhododendron simsii HOM05D007727 ORTHO05D009078 1.1e-10 70.5 104 41.3
Glyma.08G022800 Glycine max HOM05D007727 ORTHO05D009078 1.4e-10 70.1 117 41.0
Eucgr.D01742 Eucalyptus grandis HOM05D007727 ORTHO05D009078 1.8e-10 69.7 44 72.7
Gorai.003G078900 Gossypium raimondii HOM05D007727 ORTHO05D009078 1.8e-10 69.7 124 39.5
CSS0050195 Camellia sinensis var. sinensis HOM05D007727 ORTHO05D009078 3.1e-10 68.9 128 38.3
Lj4g0015473 Lotus japonicus HOM05D007727 ORTHO05D009078 4.0e-10 68.6 127 40.9
MSTRG.25674 Avicennia marina HOM05D007727 ORTHO05D009078 8.9e-10 67.4 110 41.8
Gohir.D03G083800 Gossypium hirsutum HOM05D007727 ORTHO05D009078 8.9e-10 67.4 124 38.7
CsaV3_4G006600 Cucumis sativus L. HOM05D007727 ORTHO05D009078 2.0e-09 66.2 105 44.8
Hma1.2p1_1461F.1_g285060 Hydrangea macrophylla HOM05D007727 ORTHO05D009078 2.6e-09 65.9 52 59.6
Hma1.2p1_2808F.1_g328866 Hydrangea macrophylla HOM05D007727 ORTHO05D009078 2.6e-09 65.9 52 59.6
Rhsim02G0243600 Rhododendron simsii HOM05D007727 ORTHO05D009078 2.6e-09 65.9 120 38.3
Ciclev10022327m.g Citrus clementina HOM05D007727 ORTHO05D009078 4.4e-09 65.1 123 39.0
Eucgr.D01747 Eucalyptus grandis HOM05D007727 ORTHO05D009078 4.4e-09 65.1 108 38.0
TPR.G25603 Trifolium pratense HOM05D007727 ORTHO05D009078 7.5e-09 64.3 138 37.0
Sed0000706 Sechium edule HOM05D007727 ORTHO05D009078 1.3e-08 63.5 131 32.8
TAR374G1217 Trochodendron aralioides HOM05D026466 ORTHO05D009078 2.9e-08 62.4 143 37.1
Phvul.002G298200 Phaseolus vulgaris HOM05D007727 ORTHO05D009078 4.9e-08 61.6 133 31.6
Medtr5g009290 Medicago truncatula HOM05D007727 ORTHO05D009078 6.4e-08 61.2 135 34.1
TAR374G1599 Trochodendron aralioides HOM05D026466 ORTHO05D009078 6.4e-08 61.2 143 39.9
AUR62019842 Chenopodium quinoa HOM05D007727 ORTHO05D009078 1.4e-07 60.1 80 45.0
Phvul.002G298600 Phaseolus vulgaris HOM05D007727 ORTHO05D009078 1.4e-07 60.1 126 31.7
TPR.G11121 Trifolium pratense HOM05D007727 ORTHO05D009078 1.4e-07 60.1 125 35.2
MSTRG.25675 Avicennia marina HOM05D007727 ORTHO05D009078 1.9e-07 59.7 101 42.6
Psat2g185360 Pisum sativum HOM05D007727 ORTHO05D009078 1.9e-07 59.7 131 33.6
AUR62010842 Chenopodium quinoa HOM05D007727 ORTHO05D009078 3.2e-07 58.9 81 44.4
Nitab4.5_0001210g0030 Nicotiana tabacum HOM05D011491 ORTHO05D009078 5.4e-07 58.2 106 36.8
Sopen08g030640 Solanum pennellii HOM05D011491 ORTHO05D009078 7.1e-07 57.8 49 53.1
TPR.G3394 Trifolium pratense HOM05D007727 ORTHO05D009078 1.2e-06 57.0 125 35.2
A01p15180 Brassica napus HOM05D009622 ORTHO05D011757 3.5e-06 55.5 105 35.2
BraA01t01456Z Brassica rapa HOM05D009622 ORTHO05D011757 3.5e-06 55.5 105 35.2
Peaxi162Scf00074g00091 Petunia axillaris HOM05D011491 ORTHO05D009078 3.5e-06 55.5 119 39.5
BcaC09g50936 Brassica carinata HOM05D009622 ORTHO05D011757 6.0e-06 54.7 104 33.7
C01p19110 Brassica napus HOM05D009622 ORTHO05D011757 6.0e-06 54.7 104 33.7
BolC1t01837H Brassica oleracea HOM05D009622 ORTHO05D011757 6.0e-06 54.7 104 33.7
ECA240G1351 Erigeron canadensis HOM05D007727 ORTHO05D009078 6.0e-06 54.7 44 59.1
Lj4g0008549 Lotus japonicus HOM05D007727 ORTHO05D009078 6.0e-06 54.7 133 34.6
CAN.G1804.6 Capsicum annuum HOM05D011491 ORTHO05D009078 7.8e-06 54.3 109 30.3
CARHR231260 Cardamine hirsuta HOM05D009622 ORTHO05D011757 7.8e-06 54.3 97 37.1
Sed0007502 Sechium edule HOM05D007727 ORTHO05D009078 7.8e-06 54.3 118 35.6
VMungo0251G2989 Vigna mungo HOM05D007727 ORTHO05D009078 7.8e-06 54.3 131 31.3


User provided reference genes

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