Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G2017 Fragaria x ananassa HOM05D003937 ORTHO05D004583 2.6e-161 572.0 287 100.0
FAN18G0752 Fragaria x ananassa HOM05D003937 ORTHO05D004583 4.2e-148 528.1 287 94.1
FAN08G1258 Fragaria x ananassa HOM05D003937 ORTHO05D004583 2.7e-147 525.4 287 94.4
FvH4_5g25250 Fragaria vesca HOM05D003937 ORTHO05D004583 3.2e-127 458.8 252 93.3
RcHm_v2.0_Chr7g0215391 Rosa chinensis HOM05D003937 ORTHO05D004583 5.6e-116 421.4 252 84.5
Prupe.5G011500 Prunus persica HOM05D003937 ORTHO05D004583 1.9e-71 273.5 265 58.1
MD06G1009100 Malus domestica HOM05D003937 ORTHO05D004583 5.9e-65 251.9 264 55.3
QL02p014402 Quercus lobata HOM05D003937 ORTHO05D004583 2.2e-40 170.2 265 40.4
Cfa014094 Carpinus fangiana HOM05D003937 ORTHO05D004583 5.7e-36 155.6 268 38.4
Haze_22798 Corylus avellana HOM05D003937 ORTHO05D004583 7.5e-36 155.2 268 38.1
Haze_22797 Corylus avellana HOM05D003937 ORTHO05D004583 1.6e-33 147.5 266 38.0
Rhsim07G0256300 Rhododendron simsii HOM05D003937 ORTHO05D004583 4.2e-31 139.4 264 40.2
CANSAT25G1278 Cannabis sativa HOM05D003937 ORTHO05D004583 9.4e-31 138.3 265 38.1
TAR625G1504 Trochodendron aralioides HOM05D003937 ORTHO05D004583 8.0e-30 135.2 265 37.4
TAR381G0291 Trochodendron aralioides HOM05D003937 ORTHO05D004583 1.2e-28 131.3 265 36.2
PGSC0003DMG400009905 Solanum tuberosum HOM05D003937 ORTHO05D004583 2.0e-28 130.6 264 36.4
CAN.G311.122 Capsicum annuum HOM05D003937 ORTHO05D004583 5.7e-28 129.0 264 35.2
Solyc04g082450.3 Solanum lycopersicum HOM05D003937 ORTHO05D004583 3.7e-27 126.3 264 35.2
Sopen04g036060 Solanum pennellii HOM05D003937 ORTHO05D004583 8.3e-27 125.2 264 34.8
Haze_02016 Corylus avellana HOM05D003937 ORTHO05D004583 1.1e-26 124.8 271 37.3
Oeu033835.1 Olea europaea HOM05D003937 ORTHO05D004583 1.4e-26 124.4 278 34.5
Manes.04G067300 Manihot esculenta HOM05D003937 ORTHO05D004583 2.4e-26 123.6 252 40.1
vmacro04409 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 2.4e-26 123.6 265 36.6
MSTRG.24495 Avicennia marina HOM05D003937 ORTHO05D004583 9.1e-26 121.7 271 36.9
Nn5g30963 Nelumbo nucifera HOM05D003937 ORTHO05D004583 9.1e-26 121.7 263 36.1
Cfa005351 Carpinus fangiana HOM05D003937 ORTHO05D004583 1.2e-25 121.3 270 37.8
MSTRG.22102 Avicennia marina HOM05D003937 ORTHO05D004583 1.6e-25 120.9 265 34.7
Sed0014450 Sechium edule HOM05D003937 ORTHO05D004583 2.0e-25 120.6 255 38.0
CSS0036568 Camellia sinensis var. sinensis HOM05D003937 ORTHO05D004583 3.5e-25 119.8 269 36.4
Nitab4.5_0000588g0020 Nicotiana tabacum HOM05D003937 ORTHO05D004583 1.3e-24 117.9 267 35.2
Actinidia37917 Actinidia chinensis HOM05D003937 ORTHO05D004583 2.3e-24 117.1 265 34.3
MELO3C026537.2 Cucumis melo HOM05D003937 ORTHO05D004583 1.1e-23 114.8 255 36.9
Gohir.D01G166000 Gossypium hirsutum HOM05D003937 ORTHO05D004583 1.1e-23 114.8 256 37.9
Gorai.002G206500 Gossypium raimondii HOM05D003937 ORTHO05D004583 1.1e-23 114.8 256 37.9
Dinv41880 Davidia involucrata HOM05D001927 ORTHO05D001972 1.5e-23 114.4 237 39.7
TWI75G1612 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 1.5e-23 114.4 264 35.6
Oeu046353.1 Olea europaea HOM05D003937 ORTHO05D004583 1.9e-23 114.0 264 33.3
Cc10_g00590 Coffea canephora HOM05D003937 ORTHO05D004583 2.5e-23 113.6 243 36.2
SalBow6G3106 Salvia bowleyana HOM05D003937 ORTHO05D004583 3.3e-23 113.2 268 33.6
Gohir.A01G174900 Gossypium hirsutum HOM05D003937 ORTHO05D004583 1.2e-22 111.3 258 39.5
CiPaw.05G091700 Carya illinoinensis HOM05D003937 ORTHO05D004583 3.6e-22 109.8 271 35.4
ClCG08G009390 Citrullus lanatus HOM05D003937 ORTHO05D004583 1.4e-21 107.8 249 35.3
COL.COLO4_17933 Corchorus olitorius HOM05D003937 ORTHO05D004583 1.8e-21 107.5 278 37.1
ClCG02G009960 Citrullus lanatus HOM05D003937 ORTHO05D004583 2.3e-21 107.1 259 34.7
Ciclev10028873m.g Citrus clementina HOM05D003937 ORTHO05D004583 3.0e-21 106.7 260 36.9
Thecc.02G044800 Theobroma cacao HOM05D003937 ORTHO05D004583 6.8e-21 105.5 249 39.0
Hma1.2p1_0271F.1_g108900 Hydrangea macrophylla HOM05D003937 ORTHO05D004583 1.2e-20 104.8 271 34.3
Dinv14164 Davidia involucrata HOM05D001927 ORTHO05D001972 2.6e-20 103.6 242 38.0
Duzib052G0838 Durio zibethinus HOM05D003937 ORTHO05D004583 7.5e-20 102.1 248 38.7
Actinidia32012 Actinidia chinensis HOM05D003937 ORTHO05D004583 1.3e-19 101.3 263 35.7
PSO541G3051 Papaver somniferum HOM05D003937 ORTHO05D004583 2.2e-19 100.5 251 35.1
TPR.G38537 Trifolium pratense HOM05D003937 ORTHO05D004583 2.8e-19 100.1 262 32.8
VMungo0540G0354 Vigna mungo HOM05D003937 ORTHO05D004583 4.9e-19 99.4 258 35.7
PSO675G5999 Papaver somniferum HOM05D003937 ORTHO05D004583 8.3e-19 98.6 248 33.5
Atru.chr5.3549 Acer truncatum HOM05D003937 ORTHO05D004583 1.1e-18 98.2 268 34.7
QL11p055606 Quercus lobata HOM05D003937 ORTHO05D004583 1.4e-18 97.8 267 33.7
CANSAT25G1327 Cannabis sativa HOM05D003937 ORTHO05D004583 1.8e-18 97.4 271 35.4
Lj4A806T76 Lonicera japonica HOM05D003937 ORTHO05D004583 1.8e-18 97.4 265 32.5
Glyma.06G000500 Glycine max HOM05D003937 ORTHO05D004583 3.2e-18 96.7 268 34.0
Medtr3g118500 Medicago truncatula HOM05D003937 ORTHO05D004583 3.2e-18 96.7 273 32.6
Duzib132G1231 Durio zibethinus HOM05D003937 ORTHO05D004583 4.1e-18 96.3 253 36.0
arahy.Tifrunner.gnm1.ann1.388DF8 Arachis hypogaea HOM05D003937 ORTHO05D004583 5.4e-18 95.9 249 34.5
Potri.004G205200 Populus trichocarpa HOM05D003937 ORTHO05D004583 5.4e-18 95.9 253 35.6
arahy.Tifrunner.gnm1.ann1.G18Z51 Arachis hypogaea HOM05D003937 ORTHO05D004583 7.0e-18 95.5 257 33.5
Potri.009G166100 Populus trichocarpa HOM05D003937 ORTHO05D004583 7.0e-18 95.5 259 34.7
Rhsim05G0047600 Rhododendron simsii HOM05D003937 ORTHO05D004583 7.0e-18 95.5 235 34.5
Phvul.006G042500 Phaseolus vulgaris HOM05D003937 ORTHO05D004583 1.2e-17 94.7 253 34.8
QL11p055907 Quercus lobata HOM05D003937 ORTHO05D004583 1.2e-17 94.7 267 33.3
CsaV3_6G010160 Cucumis sativus L. HOM05D003937 ORTHO05D004583 5.9e-17 92.4 279 34.1
DCAR_015663 Daucus carota HOM05D003937 ORTHO05D004583 1.0e-16 91.7 270 34.1
Sabra04G0138500 Salix brachista HOM05D003937 ORTHO05D004583 2.3e-16 90.5 256 36.3
CsaV3_6G031550 Cucumis sativus L. HOM05D003937 ORTHO05D004583 5.0e-16 89.4 231 34.6
Gohir.A03G209600 Gossypium hirsutum HOM05D003937 ORTHO05D004583 5.0e-16 89.4 248 34.3
Lalb_Chr08g0246851 Lupinus albus HOM05D003937 ORTHO05D004583 5.0e-16 89.4 233 33.5
Gohir.D02G231300 Gossypium hirsutum HOM05D003937 ORTHO05D004583 8.6e-16 88.6 270 31.9
TWI79G1491 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 8.6e-16 88.6 263 32.3
Eucgr.I01517 Eucalyptus grandis HOM05D003937 ORTHO05D004583 1.1e-15 88.2 257 32.7
Hund06165 Selenicereus undatus HOM05D003937 ORTHO05D004583 1.5e-15 87.8 246 32.1
Aqoxy6G01687 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 3.3e-15 86.7 241 32.8
AUR62011702 Chenopodium quinoa HOM05D003937 ORTHO05D004583 3.3e-15 86.7 246 31.7
Glyma.04G000700 Glycine max HOM05D003937 ORTHO05D004583 3.3e-15 86.7 276 31.5
Cpa.g.sc20.204 Carica papaya HOM05D003937 ORTHO05D004583 5.6e-15 85.9 266 33.1
Sed0010938 Sechium edule HOM05D003937 ORTHO05D004583 5.6e-15 85.9 271 32.1
Aqoxy5G01031 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 9.5e-15 85.1 240 32.1
EL10Ac9g21245 Beta vulgaris HOM05D003937 ORTHO05D004583 9.5e-15 85.1 246 32.1
DCAR_016775 Daucus carota HOM05D003937 ORTHO05D004583 9.5e-15 85.1 271 29.5
MD05G1134400 Malus domestica HOM05D003937 ORTHO05D004583 9.5e-15 85.1 258 32.9
Sc18g0006030 Simmondsia chinensis HOM05D003937 ORTHO05D004583 9.5e-15 85.1 257 31.5
AUR62012919 Chenopodium quinoa HOM05D003937 ORTHO05D004583 2.1e-14 84.0 249 32.5
DCAR_013923 Daucus carota HOM05D003937 ORTHO05D004583 3.6e-14 83.2 282 29.4
Prupe.8G178200 Prunus persica HOM05D003937 ORTHO05D004583 3.6e-14 83.2 283 31.4
Migut.N02961 Erythranthe guttata HOM05D003937 ORTHO05D004583 6.1e-14 82.4 228 34.6
Ca_16692_v3 Cicer arietinum L. HOM05D003937 ORTHO05D004583 3.1e-13 80.1 237 33.8
ECA233G5124 Erigeron canadensis HOM05D003937 ORTHO05D004583 8.9e-13 78.6 255 30.2
Nitab4.5_0000783g0190 Nicotiana tabacum HOM05D003937 ORTHO05D004583 8.9e-13 78.6 240 32.9
Oeu003435.2 Olea europaea HOM05D003937 ORTHO05D004583 1.2e-12 78.2 89 48.3
vmacro17300 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 1.2e-12 78.2 245 33.5
Gorai.005G258900 Gossypium raimondii HOM05D003937 ORTHO05D004583 1.5e-12 77.8 270 30.4
GSVIVG01009897001 Vitis vinifera HOM05D003937 ORTHO05D004583 2.0e-12 77.4 91 49.5
arahy.Tifrunner.gnm1.ann1.13SVP6 Arachis hypogaea HOM05D003937 ORTHO05D004583 2.6e-12 77.0 203 35.0
Lj1g0000413 Lotus japonicus HOM05D003937 ORTHO05D004583 3.4e-12 76.6 275 31.3
SalBow1G5464 Salvia bowleyana HOM05D003937 ORTHO05D004583 4.4e-12 76.3 209 32.5
unitig_8.g3603 Utricularia gibba HOM05D000001 ORTHO05D000003 4.4e-12 76.3 231 32.9
MD10G1139500 Malus domestica HOM05D003937 ORTHO05D004583 5.8e-12 75.9 257 31.9
Nitab4.5_0011212g0050 Nicotiana tabacum HOM05D003937 ORTHO05D004583 2.9e-11 73.6 236 31.8
GSVIVG01023888001 Vitis vinifera HOM05D003937 ORTHO05D004583 4.9e-11 72.8 115 43.5
PGR142G1962 Punica granatum HOM05D003937 ORTHO05D004583 1.1e-10 71.6 246 29.3
PGSC0003DMG400014661 Solanum tuberosum HOM05D003937 ORTHO05D004583 1.1e-10 71.6 232 30.6
Peaxi162Scf00711g00414 Petunia axillaris HOM05D003937 ORTHO05D004583 1.4e-10 71.2 264 28.4
HanXRQChr12g0367561 Helianthus annuus HOM05D003937 ORTHO05D004583 1.9e-10 70.9 263 27.4
Solyc01g112180.4 Solanum lycopersicum HOM05D003937 ORTHO05D004583 1.2e-09 68.2 233 30.9
SGA_v2.0_scaffold364G49977 Striga asiatica HOM05D003937 ORTHO05D004583 1.2e-09 68.2 254 27.6
CAN.G1725.8 Capsicum annuum HOM05D003937 ORTHO05D004583 1.6e-09 67.8 233 28.8
Migut.B00012 Erythranthe guttata HOM05D003937 ORTHO05D004583 1.6e-09 67.8 217 31.3
MBI08_g12714_MAGBIO Magnolia biondii HOM05D003937 ORTHO05D004583 3.5e-09 66.6 110 43.6
SGA_v2.0_scaffold32G13344 Striga asiatica HOM05D003937 ORTHO05D004583 3.5e-09 66.6 51 70.6
ECA233G2935 Erigeron canadensis HOM05D003937 ORTHO05D004583 4.6e-09 66.2 235 33.6
Peaxi162Scf00362g00245 Petunia axillaris HOM05D003937 ORTHO05D004583 4.6e-09 66.2 236 31.4
Sopen01g054230 Solanum pennellii HOM05D003937 ORTHO05D004583 4.6e-09 66.2 197 33.0
Dinv31951 Davidia involucrata HOM05D003937 ORTHO05D004583 1.0e-08 65.1 104 42.3
MSTRG.16955 Avicennia marina HOM05D003937 ORTHO05D004583 3.0e-08 63.5 201 30.3
HPP92_021046 Vanilla planifolia HOM05D003937 ORTHO05D004583 5.0e-08 62.8 250 30.0
FAN20G0177 Fragaria x ananassa HOM05D003937 ORTHO05D004583 6.6e-08 62.4 106 43.4
FAN27G2747 Fragaria x ananassa HOM05D003937 ORTHO05D004583 8.6e-08 62.0 104 44.2
arahy.Tifrunner.gnm1.ann1.BKYH70 Arachis hypogaea HOM05D003937 ORTHO05D004583 1.1e-07 61.6 244 29.5
FvH4_2g16620 Fragaria vesca HOM05D003937 ORTHO05D004583 1.5e-07 61.2 106 43.4
FAN15G3453 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.5e-07 61.2 106 43.4
FAN24G0691 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.5e-07 61.2 106 43.4
HanXRQChr13g0409731 Helianthus annuus HOM05D003937 ORTHO05D004583 1.5e-07 61.2 62 54.8
Lsat_1_v5_gn_8_26360 Lactuca sativa HOM05D003937 ORTHO05D004583 1.9e-07 60.8 59 54.2
HanXRQChr12g0374421 Helianthus annuus HOM05D003937 ORTHO05D004583 2.5e-07 60.5 89 44.9
vmacro08750 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 2.5e-07 60.5 53 56.6
Lj5P172T81 Lonicera japonica HOM05D003937 ORTHO05D004583 3.3e-07 60.1 176 34.7
arahy.Tifrunner.gnm1.ann1.5851ZQ Arachis hypogaea HOM05D003937 ORTHO05D004583 4.3e-07 59.7 114 40.4
Psat5g000520 Pisum sativum HOM05D003937 ORTHO05D004583 4.3e-07 59.7 56 57.1
RcHm_v2.0_Chr6g0280681 Rosa chinensis HOM05D003937 ORTHO05D004583 4.3e-07 59.7 121 39.7
Lsat_1_v5_gn_3_48780 Lactuca sativa HOM05D003937 ORTHO05D004583 9.5e-07 58.5 156 30.1
Lalb_Chr11g0061231 Lupinus albus HOM05D003937 ORTHO05D004583 9.5e-07 58.5 128 35.2
CDE05G1352 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 1.6e-06 57.8 92 44.6
Nn6g31719 Nelumbo nucifera HOM05D003937 ORTHO05D004583 1.6e-06 57.8 137 35.8
GSVIVG01026659001 Vitis vinifera HOM05D003937 ORTHO05D004583 1.6e-06 57.8 122 37.7
ATR0661G493 Amborella trichopoda HOM05D003937 ORTHO05D004583 2.1e-06 57.4 118 35.6
Zm00001eb104250 Zea mays HOM05D003937 ORTHO05D004583 3.6e-06 56.6 73 42.5
ECA246G4591 Erigeron canadensis HOM05D003937 ORTHO05D004583 8.0e-06 55.5 51 58.8


User provided reference genes

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