Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G1950 Fragaria x ananassa HOM05D003094 ORTHO05D003482 1.3e-66 256.5 159 100.0
FAN13G1164 Fragaria x ananassa HOM05D003094 ORTHO05D003482 1.0e-63 246.9 159 89.3
FvH4_5g16690 Fragaria vesca HOM05D003094 ORTHO05D003482 2.0e-62 242.7 159 85.5
FAN18G0043 Fragaria x ananassa HOM05D003094 ORTHO05D003482 2.6e-62 242.3 159 86.8
FAN08G1507 Fragaria x ananassa HOM05D003094 ORTHO05D003482 6.3e-61 237.7 155 83.2
RcHm_v2.0_Chr7g0179411 Rosa chinensis HOM05D003094 ORTHO05D003482 5.7e-54 214.5 164 75.6
Prupe.5G225000 Prunus persica HOM05D003094 ORTHO05D003482 2.1e-27 126.3 106 65.1
MD06G1220600 Malus domestica HOM05D003094 ORTHO05D003482 1.0e-26 124.0 112 62.5
Atru.chr9.905 Acer truncatum HOM05D003094 ORTHO05D003482 8.7e-18 94.4 178 35.4
ClCG06G014600 Citrullus lanatus HOM05D003094 ORTHO05D003482 7.3e-17 91.3 176 39.2
MD06G1220500 Malus domestica HOM05D003094 ORTHO05D003482 2.1e-16 89.7 181 37.0
Dinv12225 Davidia involucrata HOM05D003094 ORTHO05D003482 2.4e-15 86.3 177 33.9
Glyma.08G094700 Glycine max HOM05D003094 ORTHO05D003482 2.4e-15 86.3 151 37.7
CiPaw.16G089100 Carya illinoinensis HOM05D003094 ORTHO05D003482 3.1e-15 85.9 170 36.5
Ca_11586_v3 Cicer arietinum L. HOM05D003094 ORTHO05D003482 5.3e-15 85.1 159 35.2
Potri.015G044100 Populus trichocarpa HOM05D003094 ORTHO05D003482 6.9e-15 84.7 170 36.5
MD14G1229900 Malus domestica HOM05D003094 ORTHO05D003482 1.5e-14 83.6 174 35.1
Ciclev10020325m.g Citrus clementina HOM05D003094 ORTHO05D003482 2.0e-14 83.2 174 35.1
Glyma.05G139400 Glycine max HOM05D003094 ORTHO05D003482 2.6e-14 82.8 151 35.8
Cfa019732 Carpinus fangiana HOM05D003094 ORTHO05D003482 3.4e-14 82.4 196 31.6
MELO3C017325.2 Cucumis melo HOM05D003094 ORTHO05D003482 4.4e-14 82.0 174 36.2
Sed0020442 Sechium edule HOM05D003094 ORTHO05D003482 4.4e-14 82.0 173 33.5
TWI60G1358 Tripterygium wilfordii HOM05D003094 ORTHO05D003482 4.4e-14 82.0 174 36.2
Thecc.07G091700 Theobroma cacao HOM05D003094 ORTHO05D003482 9.9e-14 80.9 175 34.3
Atru.chr9.906 Acer truncatum HOM05D003094 ORTHO05D003482 1.3e-13 80.5 111 45.9
Duzib213G0897 Durio zibethinus HOM05D003094 ORTHO05D003482 1.3e-13 80.5 176 33.0
Haze_18734 Corylus avellana HOM05D003094 ORTHO05D003482 1.7e-13 80.1 196 32.1
PGR044G0078 Punica granatum HOM05D003094 ORTHO05D003482 1.7e-13 80.1 174 34.5
Gohir.D13G152004 Gossypium hirsutum HOM05D003094 ORTHO05D003482 2.2e-13 79.7 178 32.6
VMungo0251G1973 Vigna mungo HOM05D003094 ORTHO05D003482 2.2e-13 79.7 151 35.8
Phvul.002G182800 Phaseolus vulgaris HOM05D003094 ORTHO05D003482 3.8e-13 79.0 151 35.1
GSVIVG01008338001 Vitis vinifera HOM05D003094 ORTHO05D003482 3.8e-13 79.0 183 33.9
Gohir.A13G146900 Gossypium hirsutum HOM05D003094 ORTHO05D003482 4.9e-13 78.6 178 32.6
RcHm_v2.0_Chr2g0128201 Rosa chinensis HOM05D003094 ORTHO05D003482 6.4e-13 78.2 172 34.9
Cpa.g.sc51.5 Carica papaya HOM05D003094 ORTHO05D003482 1.1e-12 77.4 172 34.3
Gorai.013G169300 Gossypium raimondii HOM05D003094 ORTHO05D003482 1.1e-12 77.4 178 32.6
Peaxi162Scf00683g00019 Petunia axillaris HOM05D003094 ORTHO05D003482 1.1e-12 77.4 115 43.5
Gohir.A13G146300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.9e-12 76.6 176 33.0
Gohir.D13G151300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.9e-12 76.6 178 33.1
Gorai.013G170500 Gossypium raimondii HOM05D003094 ORTHO05D003482 1.9e-12 76.6 178 33.1
Sc04g0003380 Simmondsia chinensis HOM05D003094 ORTHO05D003482 1.9e-12 76.6 121 40.5
THA.LOC104820380 Tarenaya hassleriana HOM05D003094 ORTHO05D003482 1.9e-12 76.6 175 32.0
Sabra15G0041200 Salix brachista HOM05D003094 ORTHO05D003482 3.2e-12 75.9 170 35.9
Psat7g083520 Pisum sativum HOM05D003094 ORTHO05D003482 4.2e-12 75.5 157 33.8
Cfa019731 Carpinus fangiana HOM05D003094 ORTHO05D003482 1.6e-11 73.6 150 36.7
CANSAT80G1577 Cannabis sativa HOM05D003094 ORTHO05D003482 2.1e-11 73.2 179 36.9
Haze_18735 Corylus avellana HOM05D003094 ORTHO05D003482 2.1e-11 73.2 118 41.5
Dinv17506 Davidia involucrata HOM05D003094 ORTHO05D003482 2.1e-11 73.2 129 36.4
COL.COLO4_27184 Corchorus olitorius HOM05D003094 ORTHO05D003482 2.7e-11 72.8 182 31.9
CiPaw.16G089200 Carya illinoinensis HOM05D003094 ORTHO05D003482 3.5e-11 72.4 117 41.9
FvH4_6g26830 Fragaria vesca HOM05D003094 ORTHO05D003482 6.0e-11 71.6 173 32.4
PGSC0003DMG401005733 Solanum tuberosum HOM05D003094 ORTHO05D003482 6.0e-11 71.6 112 42.9
Cc04_g06860 Coffea canephora HOM05D003094 ORTHO05D003482 7.9e-11 71.2 98 40.8
CsaV3_1G004020 Cucumis sativus L. HOM05D003094 ORTHO05D003482 7.9e-11 71.2 183 34.4
Dinv07353 Davidia involucrata HOM05D003094 ORTHO05D003482 7.9e-11 71.2 129 37.2
arahy.Tifrunner.gnm1.ann1.D1K70W Arachis hypogaea HOM05D003094 ORTHO05D003482 1.7e-10 70.1 162 31.5
Gohir.D07G064100 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.7e-10 70.1 91 47.3
QL10p026547 Quercus lobata HOM05D003094 ORTHO05D003482 1.7e-10 70.1 181 31.5
COL.COLO4_38537 Corchorus olitorius HOM05D003094 ORTHO05D003482 2.3e-10 69.7 71 50.7
Duzib084G0458 Durio zibethinus HOM05D003094 ORTHO05D003482 2.3e-10 69.7 75 50.7
ECA233G5083 Erigeron canadensis HOM05D003094 ORTHO05D003482 2.3e-10 69.7 110 40.9
Eucgr.K02236 Eucalyptus grandis HOM05D003094 ORTHO05D003482 2.3e-10 69.7 187 31.6
Gohir.A07G059300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 2.3e-10 69.7 81 49.4
Gorai.001G067600 Gossypium raimondii HOM05D003094 ORTHO05D003482 3.0e-10 69.3 91 47.3
AUR62042498 Chenopodium quinoa HOM05D003094 ORTHO05D003482 3.9e-10 68.9 178 32.6
Dinv09627 Davidia involucrata HOM05D003094 ORTHO05D003482 3.9e-10 68.9 129 36.4
FAN05G2182 Fragaria x ananassa HOM05D003094 ORTHO05D003482 3.9e-10 68.9 173 31.8
Manes.01G015200 Manihot esculenta HOM05D003094 ORTHO05D003482 3.9e-10 68.9 122 41.8
Hund11930 Selenicereus undatus HOM05D003094 ORTHO05D003482 3.9e-10 68.9 111 37.8
Solyc03g119170.3 Solanum lycopersicum HOM05D003094 ORTHO05D003482 3.9e-10 68.9 102 40.2
Sopen03g038060 Solanum pennellii HOM05D003094 ORTHO05D003482 3.9e-10 68.9 102 40.2
PGSC0003DMG402005733 Solanum tuberosum HOM05D003094 ORTHO05D003482 3.9e-10 68.9 137 36.5
FAN14G2495 Fragaria x ananassa HOM05D003094 ORTHO05D003482 5.1e-10 68.6 173 31.8
CSS0029576 Camellia sinensis var. sinensis HOM05D003094 ORTHO05D003482 6.6e-10 68.2 111 37.8
EL10Ac7g16627 Beta vulgaris HOM05D003094 ORTHO05D003482 8.7e-10 67.8 175 29.7
Gorai.002G151500 Gossypium raimondii HOM05D003094 ORTHO05D003482 8.7e-10 67.8 130 36.2
THA.LOC104812151 Tarenaya hassleriana HOM05D003094 ORTHO05D003482 8.7e-10 67.8 112 41.1
TWI81G0976 Tripterygium wilfordii HOM05D003094 ORTHO05D003482 8.7e-10 67.8 104 44.2
vmacro16434 Vaccinium macrocarpon HOM05D003094 ORTHO05D003482 8.7e-10 67.8 129 41.1
EL10Ac4g10181 Beta vulgaris HOM05D003094 ORTHO05D003482 1.1e-09 67.4 175 29.1
CAN.G1129.14 Capsicum annuum HOM05D003094 ORTHO05D003482 1.1e-09 67.4 87 44.8
FAN02G1016 Fragaria x ananassa HOM05D003094 ORTHO05D003482 1.1e-09 67.4 173 31.8
Manes.05G133000 Manihot esculenta HOM05D003094 ORTHO05D003482 1.1e-09 67.4 170 34.1
Nitab4.5_0001986g0080 Nicotiana tabacum HOM05D003094 ORTHO05D003482 1.1e-09 67.4 114 39.5
SHI53281 Sapria himalayana HOM05D003094 ORTHO05D003482 1.1e-09 67.4 107 38.3
vmacro07219 Vaccinium macrocarpon HOM05D003094 ORTHO05D003482 1.5e-09 67.0 114 36.8
AUR62040348 Chenopodium quinoa HOM05D003094 ORTHO05D003482 1.9e-09 66.6 179 31.8
Potri.012G046000 Populus trichocarpa HOM05D003094 ORTHO05D003482 2.5e-09 66.2 120 38.3
Solyc03g119160.3 Solanum lycopersicum HOM05D003094 ORTHO05D003482 2.5e-09 66.2 100 44.0
Sopen03g038050 Solanum pennellii HOM05D003094 ORTHO05D003482 2.5e-09 66.2 75 48.0
Actinidia19943 Actinidia chinensis HOM05D003094 ORTHO05D003482 5.6e-09 65.1 187 31.6
Lj9A424T34 Lonicera japonica HOM05D003094 ORTHO05D003482 5.6e-09 65.1 91 40.7
Peaxi162Scf00683g00159 Petunia axillaris HOM05D003094 ORTHO05D003482 5.6e-09 65.1 105 38.1
Actinidia36579 Actinidia chinensis HOM05D003094 ORTHO05D003482 7.3e-09 64.7 185 31.9
Nitab4.5_0004955g0040 Nicotiana tabacum HOM05D003094 ORTHO05D003482 7.3e-09 64.7 127 37.0
Sabra12G0032200 Salix brachista HOM05D003094 ORTHO05D003482 7.3e-09 64.7 108 39.8
Nitab4.5_0001986g0070 Nicotiana tabacum HOM05D003094 ORTHO05D003482 1.3e-08 63.9 127 37.0
SalBow7G3604 Salvia bowleyana HOM05D003094 ORTHO05D003482 1.3e-08 63.9 188 30.3
TPR.G35824 Trifolium pratense HOM05D003094 ORTHO05D003482 1.3e-08 63.9 119 36.1
AT3G18240 Arabidopsis thaliana HOM05D003094 ORTHO05D003482 1.6e-08 63.5 172 29.1
Rhsim10G0183200 Rhododendron simsii HOM05D003094 ORTHO05D003482 1.6e-08 63.5 108 38.9
SGA_v2.0_scaffold29G12062 Striga asiatica HOM05D003094 ORTHO05D003482 1.6e-08 63.5 98 35.7
HPP92_008864 Vanilla planifolia HOM05D003094 ORTHO05D003482 2.1e-08 63.2 143 30.8
Ah.11g047710 Amaranthus hybridus HOM05D003094 ORTHO05D003482 2.8e-08 62.8 89 43.8
Cc04_g06850 Coffea canephora HOM05D003094 ORTHO05D003482 2.8e-08 62.8 121 36.4
Lsat_1_v5_gn_8_141460 Lactuca sativa HOM05D003094 ORTHO05D003482 2.8e-08 62.8 107 41.1
QL10p026559 Quercus lobata HOM05D003094 ORTHO05D003482 2.8e-08 62.8 82 46.3
Sed0019035 Sechium edule HOM05D003094 ORTHO05D003482 3.6e-08 62.4 60 51.7
TPR.G5116 Trifolium pratense HOM05D003094 ORTHO05D003482 3.6e-08 62.4 119 34.5
Migut.D00778 Erythranthe guttata HOM05D003094 ORTHO05D003482 6.2e-08 61.6 100 39.0
Lj4g0013095 Lotus japonicus HOM05D003094 ORTHO05D003482 6.2e-08 61.6 165 32.1
Gorai.003G056600 Gossypium raimondii HOM05D003094 ORTHO05D003482 8.1e-08 61.2 121 33.9
TAR374G0309 Trochodendron aralioides HOM05D003094 ORTHO05D003482 8.1e-08 61.2 174 33.3
HPP92_008848 Vanilla planifolia HOM05D003094 ORTHO05D003482 1.1e-07 60.8 143 29.4
HanXRQChr17g0558961 Helianthus annuus HOM05D003094 ORTHO05D003482 1.4e-07 60.5 66 51.5
Rhsim12G0141600 Rhododendron simsii HOM05D003094 ORTHO05D003482 1.4e-07 60.5 157 31.2
Sc10g0009380 Simmondsia chinensis HOM05D003094 ORTHO05D003482 1.4e-07 60.5 81 44.4
AT4G21460 Arabidopsis thaliana HOM05D003094 ORTHO05D003482 2.4e-07 59.7 174 30.5
arahy.Tifrunner.gnm1.ann1.2IG2A1 Arachis hypogaea HOM05D003094 ORTHO05D003482 2.4e-07 59.7 162 28.4
MSTRG.4516 Avicennia marina HOM05D003094 ORTHO05D003482 2.4e-07 59.7 140 35.0
Cpa.g.sc3.463 Carica papaya HOM05D003094 ORTHO05D003482 2.4e-07 59.7 106 40.6
MELO3C002109.2 Cucumis melo HOM05D003094 ORTHO05D003482 2.4e-07 59.7 61 55.7
TAR374G0733 Trochodendron aralioides HOM05D003094 ORTHO05D003482 2.4e-07 59.7 174 32.8
CsaV3_1G006930 Cucumis sativus L. HOM05D003094 ORTHO05D003482 3.1e-07 59.3 103 43.7
Nitab4.5_0004028g0060 Nicotiana tabacum HOM05D003094 ORTHO05D003482 3.1e-07 59.3 195 29.2
Oeu052057.1 Olea europaea HOM05D003094 ORTHO05D003482 3.1e-07 59.3 141 34.8
BolC5t33491H Brassica oleracea HOM05D003094 ORTHO05D003482 4.0e-07 58.9 181 29.8
Gohir.D08G096900 Gossypium hirsutum HOM05D003094 ORTHO05D003482 4.0e-07 58.9 123 33.3
ATR0757G079 Amborella trichopoda HOM05D003094 ORTHO05D003482 5.3e-07 58.5 155 32.9
AL3G31470 Arabidopsis lyrata HOM05D003094 ORTHO05D003482 5.3e-07 58.5 175 29.1
Aa31LG8G5090 Aethionema arabicum HOM05D003094 ORTHO05D003482 6.9e-07 58.2 178 28.1
Carub.0003s1800 Capsella rubella HOM05D003094 ORTHO05D003482 6.9e-07 58.2 175 29.7
HanXRQChr14g0446571 Helianthus annuus HOM05D003094 ORTHO05D003482 6.9e-07 58.2 157 33.8
MBI16_g44830_MAGBIO Magnolia biondii HOM05D003094 ORTHO05D003482 6.9e-07 58.2 170 28.8
CARHR093590 Cardamine hirsuta HOM05D003094 ORTHO05D003482 9.0e-07 57.8 192 28.6
arahy.Tifrunner.gnm1.ann1.J45ZPD Arachis hypogaea HOM05D003094 ORTHO05D003482 1.5e-06 57.0 120 36.7
Gorai.012G098500 Gossypium raimondii HOM05D000575 ORTHO05D003482 1.5e-06 57.0 114 33.3
Nitab4.5_0008678g0040 Nicotiana tabacum HOM05D003094 ORTHO05D003482 1.5e-06 57.0 54 53.7
Hund02353 Selenicereus undatus HOM05D003094 ORTHO05D003482 2.0e-06 56.6 85 43.5
Gohir.D10G153150 Gossypium hirsutum HOM05D003094 ORTHO05D003482 2.6e-06 56.2 76 39.5
ClCG04G010900 Citrullus lanatus HOM05D003094 ORTHO05D003482 3.4e-06 55.8 158 34.8
Actinidia35101 Actinidia chinensis HOM05D003094 ORTHO05D003482 4.5e-06 55.5 90 37.8
Gorai.001G159100 Gossypium raimondii HOM05D003094 ORTHO05D003482 4.5e-06 55.5 77 37.7
arahy.Tifrunner.gnm1.ann1.53L2ET Arachis hypogaea HOM05D010130 ORTHO05D010480 7.6e-06 54.7 120 35.8
A05p31440 Brassica napus HOM05D003094 ORTHO05D003482 7.6e-06 54.7 179 27.4
CAN.G1129.13 Capsicum annuum HOM05D003094 ORTHO05D003482 7.6e-06 54.7 124 35.5
Gohir.A02G112001 Gossypium hirsutum HOM05D003094 ORTHO05D003482 7.6e-06 54.7 114 33.3
Hma1.2p1_1283F.1_g272860 Hydrangea macrophylla HOM05D003094 ORTHO05D003482 7.6e-06 54.7 60 45.0
Lalb_Chr08g0242311 Lupinus albus HOM05D003094 ORTHO05D003482 7.6e-06 54.7 135 34.1
C05p47760 Brassica napus HOM05D003094 ORTHO05D003482 9.9e-06 54.3 182 28.6
BraA05t21983Z Brassica rapa HOM05D003094 ORTHO05D003482 9.9e-06 54.3 179 27.4
PSO017G6706 Papaver somniferum HOM05D003094 ORTHO05D003482 9.9e-06 54.3 119 32.8
PSO063G0897 Papaver somniferum HOM05D003094 ORTHO05D003482 9.9e-06 54.3 119 32.8


User provided reference genes

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