Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G1892 Fragaria x ananassa HOM05D006677 ORTHO05D008348 0.0e+00 1570.1 795 100.0
FAN13G0013 Fragaria x ananassa HOM05D006677 ORTHO05D008348 0.0e+00 1538.5 796 98.0
FAN08G3018 Fragaria x ananassa HOM05D006677 ORTHO05D008348 0.0e+00 1531.5 795 97.6
FvH4_5g19410 Fragaria vesca HOM05D006677 ORTHO05D008348 0.0e+00 1525.4 795 96.7
FAN18G1193 Fragaria x ananassa HOM05D006677 ORTHO05D008348 0.0e+00 1523.5 795 96.7
RcHm_v2.0_Chr7g0203921 Rosa chinensis HOM05D006677 ORTHO05D008348 0.0e+00 1444.9 793 90.5
MD06G1053300 Malus domestica HOM05D006677 ORTHO05D008348 0.0e+00 1187.9 812 74.5
MD04G1060300 Malus domestica HOM05D006677 ORTHO05D008348 0.0e+00 1165.6 812 73.6
Prupe.5G065400 Prunus persica HOM05D006677 ORTHO05D008348 0.0e+00 1164.4 800 74.9
CANSAT21G0792 Cannabis sativa HOM05D006677 ORTHO05D008348 5.4e-312 1074.3 801 67.4
COL.COLO4_37128 Corchorus olitorius HOM05D006677 ORTHO05D008348 3.3e-299 1031.6 799 64.8
Cfa012688 Carpinus fangiana HOM05D006677 ORTHO05D008348 8.6e-292 1006.9 795 65.7
Thecc.03G248200 Theobroma cacao HOM05D006677 ORTHO05D008348 1.4e-289 999.6 792 63.9
Haze_07944 Corylus avellana HOM05D006677 ORTHO05D008348 8.3e-287 990.3 854 61.2
Gorai.008G233700 Gossypium raimondii HOM05D006677 ORTHO05D008348 1.9e-286 989.2 790 63.2
Duzib068G0477 Durio zibethinus HOM05D006677 ORTHO05D008348 2.1e-285 985.7 792 63.5
Gohir.D12G218100 Gossypium hirsutum HOM05D006677 ORTHO05D008348 2.7e-285 985.3 790 63.0
Gohir.A12G215500 Gossypium hirsutum HOM05D006677 ORTHO05D008348 4.4e-280 968.0 790 62.4
Hma1.2p1_0316F.1_g122840 Hydrangea macrophylla HOM05D006677 ORTHO05D008348 7.1e-278 960.7 796 61.1
TWI60G0317 Tripterygium wilfordii HOM05D006677 ORTHO05D008348 1.1e-275 953.4 787 61.1
QL12p011426 Quercus lobata HOM05D006677 ORTHO05D008348 7.3e-275 950.7 851 59.5
CiPaw.12G050300 Carya illinoinensis HOM05D006677 ORTHO05D008348 1.2e-274 949.9 805 62.9
Manes.02G041400 Manihot esculenta HOM05D006677 ORTHO05D008348 2.8e-274 948.7 793 61.3
PGR031G0681 Punica granatum HOM05D006677 ORTHO05D008348 2.8e-274 948.7 792 60.2
Lj2C223G6 Lonicera japonica HOM05D006677 ORTHO05D008348 2.2e-271 939.1 800 61.1
Potri.001G155800 Populus trichocarpa HOM05D006677 ORTHO05D008348 3.8e-271 938.3 800 61.5
TAR374G0600 Trochodendron aralioides HOM05D006677 ORTHO05D008348 6.4e-271 937.6 802 59.9
CSS0025591 Camellia sinensis var. sinensis HOM05D006677 ORTHO05D008348 1.1e-270 936.8 794 60.2
Atru.chr9.1276 Acer truncatum HOM05D006677 ORTHO05D008348 2.7e-269 932.2 801 59.9
Duzib205G2017 Durio zibethinus HOM05D006677 ORTHO05D008348 1.0e-268 930.2 792 60.6
Ciclev10018892m.g Citrus clementina HOM05D006677 ORTHO05D008348 5.6e-267 924.5 804 59.7
Solyc08g078440.3 Solanum lycopersicum HOM05D006677 ORTHO05D008348 1.3e-266 923.3 789 59.3
Sopen08g026930 Solanum pennellii HOM05D006677 ORTHO05D008348 8.1e-266 920.6 789 59.1
Nitab4.5_0001381g0100 Nicotiana tabacum HOM05D006677 ORTHO05D008348 5.3e-265 917.9 790 59.0
CAN.G1178.20 Capsicum annuum HOM05D006677 ORTHO05D008348 7.1e-262 907.5 789 58.3
CSS0006614 Camellia sinensis var. sinensis HOM05D006677 ORTHO05D008348 1.2e-261 906.7 794 58.8
Peaxi162Scf00209g00130 Petunia axillaris HOM05D006677 ORTHO05D008348 1.2e-261 906.7 790 59.5
Rhsim07G0111300 Rhododendron simsii HOM05D006677 ORTHO05D008348 3.9e-260 901.7 792 59.8
Hund14577 Selenicereus undatus HOM05D006677 ORTHO05D008348 5.1e-260 901.4 791 58.3
Nn6g33880 Nelumbo nucifera HOM05D006677 ORTHO05D008348 1.9e-259 899.4 804 57.8
AUR62007111 Chenopodium quinoa HOM05D006677 ORTHO05D008348 2.5e-259 899.0 796 57.4
THA.LOC104806670 Tarenaya hassleriana HOM05D006677 ORTHO05D008348 9.6e-259 897.1 790 58.2
vmacro14066 Vaccinium macrocarpon HOM05D006677 ORTHO05D008348 1.8e-257 892.9 792 58.6
Sc22g0000980 Simmondsia chinensis HOM05D006677 ORTHO05D008348 1.2e-256 890.2 794 57.7
AUR62019973 Chenopodium quinoa HOM05D006677 ORTHO05D008348 1.5e-256 889.8 796 57.3
Rhsim07G0110800 Rhododendron simsii HOM05D006677 ORTHO05D008348 2.0e-256 889.4 813 58.3
Cc08_g12180 Coffea canephora HOM05D006677 ORTHO05D008348 3.4e-256 888.6 792 55.9
AL8G10640 Arabidopsis lyrata HOM05D006677 ORTHO05D008348 1.9e-254 882.9 799 56.7
CARHR173970 Cardamine hirsuta HOM05D006677 ORTHO05D008348 9.3e-254 880.6 796 55.9
MSTRG.12123 Avicennia marina HOM05D006677 ORTHO05D008348 1.2e-253 880.2 789 57.3
Lalb_Chr05g0221161 Lupinus albus HOM05D006677 ORTHO05D008348 8.7e-252 874.0 793 57.0
arahy.Tifrunner.gnm1.ann1.WU4RWF Arachis hypogaea HOM05D006677 ORTHO05D008348 1.5e-251 873.2 816 56.0
Aqoxy7G00821 Aquilegia oxysepala HOM05D006677 ORTHO05D008348 8.2e-250 867.5 802 55.5
arahy.Tifrunner.gnm1.ann1.IBE8NF Arachis hypogaea HOM05D006677 ORTHO05D008348 2.4e-249 865.9 819 55.7
EL10Ac5g12357 Beta vulgaris HOM05D006677 ORTHO05D008348 3.1e-249 865.5 790 56.7
Carub.0008s0038 Capsella rubella HOM05D006677 ORTHO05D008348 1.2e-248 863.6 796 55.7
SGA_v2.0_scaffold104G30177 Striga asiatica HOM05D006677 ORTHO05D008348 1.2e-248 863.6 812 54.1
Ah.12g054330 Amaranthus hybridus HOM05D006677 ORTHO05D008348 3.4e-248 862.1 791 56.3
Sp2g12115 Schrenkiella parvula HOM05D006677 ORTHO05D008348 1.0e-247 860.5 798 55.3
Dinv21656 Davidia involucrata HOM05D006677 ORTHO05D008348 1.3e-247 860.1 632 67.4
AT5G47400 Arabidopsis thaliana HOM05D006677 ORTHO05D008348 2.9e-247 859.0 802 55.9
Nitab4.5_0002289g0120 Nicotiana tabacum HOM05D006677 ORTHO05D008348 2.9e-247 859.0 795 56.2
Thhalv10000783m.g Eutrema salsugineum HOM05D006677 ORTHO05D008348 1.1e-246 857.1 797 55.5
C07p31040 Brassica napus HOM05D006677 ORTHO05D008348 1.9e-246 856.3 797 55.8
DCAR_004989 Daucus carota HOM05D006677 ORTHO05D008348 2.5e-246 855.9 792 55.2
BolC7t43648H Brassica oleracea HOM05D006677 ORTHO05D008348 3.2e-246 855.5 795 56.0
BcaC06g34255 Brassica carinata HOM05D006677 ORTHO05D008348 7.1e-246 854.4 798 55.8
Migut.A01134 Erythranthe guttata HOM05D006677 ORTHO05D008348 1.0e-244 850.5 808 55.7
Lj4g0000262 Lotus japonicus HOM05D006677 ORTHO05D008348 3.0e-244 849.0 798 56.3
Ca_21980_v3 Cicer arietinum L. HOM05D006677 ORTHO05D008348 3.3e-243 845.5 805 55.3
Manes.01G083200 Manihot esculenta HOM05D006677 ORTHO05D008348 2.8e-242 842.4 793 55.5
SalBow6G5281 Salvia bowleyana HOM05D006677 ORTHO05D008348 1.4e-241 840.1 845 52.5
HanXRQChr16g0501081 Helianthus annuus HOM05D006677 ORTHO05D008348 3.1e-241 839.0 798 55.0
Aa31sc151G40 Aethionema arabicum HOM05D006677 ORTHO05D008348 5.9e-240 834.7 761 56.4
A06p45110 Brassica napus HOM05D006677 ORTHO05D008348 1.4e-238 830.1 796 54.8
Glyma.17G143800 Glycine max HOM05D006677 ORTHO05D008348 2.1e-237 826.2 805 56.4
Medtr4g100700 Medicago truncatula HOM05D006677 ORTHO05D008348 2.5e-235 819.3 806 54.8
Actinidia26803 Actinidia chinensis HOM05D006677 ORTHO05D008348 8.2e-234 814.3 637 63.6
BraA06t27381Z Brassica rapa HOM05D006677 ORTHO05D008348 8.2e-234 814.3 794 54.0
Lsat_1_v5_gn_6_18041 Lactuca sativa HOM05D006677 ORTHO05D008348 2.2e-226 789.6 800 51.9
Phvul.003G222500 Phaseolus vulgaris HOM05D006677 ORTHO05D008348 3.6e-221 772.3 805 53.9
VMungo0251G0668 Vigna mungo HOM05D006677 ORTHO05D008348 1.4e-220 770.4 800 53.2
ECA233G6125 Erigeron canadensis HOM05D006677 ORTHO05D008348 2.6e-219 766.1 748 54.3
HanXRQChr08g0227751 Helianthus annuus HOM05D006677 ORTHO05D008348 3.3e-219 765.8 792 51.9
Psat4g072920 Pisum sativum HOM05D006677 ORTHO05D008348 8.2e-218 761.1 791 52.2
CDE11G0086 Ceratophyllum demersum HOM05D006677 ORTHO05D008348 3.0e-212 742.7 783 49.0
BcaC06g31390 Brassica carinata HOM05D006677 ORTHO05D008348 3.8e-207 725.7 664 56.0
Oeu017057.2 Olea europaea HOM05D006677 ORTHO05D008348 9.4e-206 721.1 835 49.6
BcaC06g31392 Brassica carinata HOM05D006677 ORTHO05D008348 2.3e-204 716.5 783 50.3
Sabra01G0125500 Salix brachista HOM05D006677 ORTHO05D008348 1.1e-201 707.6 647 59.0
Eucgr.D02100 Eucalyptus grandis HOM05D006677 ORTHO05D008348 2.8e-197 693.0 581 61.4
HPP92_022463 Vanilla planifolia HOM05D006677 ORTHO05D008348 3.0e-196 689.5 809 46.2
ATR0057G118 Amborella trichopoda HOM05D006677 ORTHO05D008348 4.3e-166 589.3 807 43.1
Glyma.05G062000 Glycine max HOM05D006677 ORTHO05D008348 4.4e-163 579.3 610 53.0
Zm00001eb000330 Zea mays HOM05D006677 ORTHO05D008348 2.3e-143 513.8 801 40.1
Actinidia10841 Actinidia chinensis HOM05D006677 ORTHO05D008348 8.7e-127 458.8 791 39.1
unitig_21.g20314 Utricularia gibba HOM05D006677 ORTHO05D008348 1.0e-111 408.7 809 34.6
Pp3c19_23280 Physcomitrium patens HOM05D006677 ORTHO05D008348 1.6e-107 394.8 860 33.5
TPR.G36090 Trifolium pratense HOM05D006677 ORTHO05D008348 2.7e-91 340.9 420 45.7
TPR.G37689 Trifolium pratense HOM05D006677 ORTHO05D008348 2.9e-90 337.4 295 59.0
GSVIVG01006275001 Vitis vinifera HOM05D006677 ORTHO05D000005 6.1e-88 329.7 250 68.0
AagrBONN_evm.TU.Sc2ySwM_228.2440 Anthoceros agrestis HOM05D006677 ORTHO05D008348 5.2e-87 326.6 866 30.4
Cpa.g.sc3684.1 Carica papaya HOM05D006677 ORTHO05D008348 1.7e-85 321.6 249 65.5
GSVIVG01006276001 Vitis vinifera HOM05D006677 ORTHO05D008348 5.4e-84 316.6 259 60.6
DCAR_004986 Daucus carota HOM05D006677 ORTHO05D008348 9.5e-81 305.8 283 53.4
DCAR_004979 Daucus carota HOM05D006677 ORTHO05D008348 2.1e-80 304.7 283 53.7
TAR365G0661 Trochodendron aralioides HOM05D006677 ORTHO05D008348 3.1e-71 274.2 271 53.1
TAR633G2042 Trochodendron aralioides HOM05D006677 ORTHO05D008348 8.4e-53 213.0 181 59.1
DCAR_004983 Daucus carota HOM05D006677 ORTHO05D008348 1.1e-44 186.0 200 47.0
DCAR_004974 Daucus carota HOM05D006677 ORTHO05D008348 1.0e-42 179.5 205 45.9
CBR_g16835 Chara braunii HOM05D000019 ORTHO05D000048 5.1e-42 177.2 1004 22.6
TAR629G1120 Trochodendron aralioides HOM05D006677 ORTHO05D008348 3.6e-40 171.0 145 58.6
CAN.G26.36 Capsicum annuum HOM05D006677 ORTHO05D008348 3.2e-36 157.9 176 46.0
Os10g0560500 Oryza sativa ssp. japonica HOM05D006677 ORTHO05D008348 1.6e-35 155.6 292 34.9
DCAR_004984 Daucus carota HOM05D006677 ORTHO05D008348 4.9e-29 134.0 87 71.3
MCO13G224 Micromonas commoda HOM05D006677 ORTHO05D008348 2.3e-18 98.6 656 21.8
DCAR_004972 Daucus carota HOM05D006677 ORTHO05D008348 3.4e-14 84.7 113 44.2
Cre06.g278126 Chlamydomonas reinhardtii HOM05D006677 ORTHO05D008348 4.2e-12 77.8 246 28.5
TPR.G36480 Trifolium pratense HOM05D004733 ORTHO05D008348 9.3e-12 76.6 46 71.7
CAN.G1178.24 Capsicum annuum HOM05D006677 ORTHO05D008348 6.7e-10 70.5 50 62.0
ECA233G4789 Erigeron canadensis HOM05D006677 ORTHO05D008348 2.0e-06 58.9 49 57.1
ECA234G1619 Erigeron canadensis HOM05D000206 ORTHO05D000232 2.6e-06 58.5 48 58.3


User provided reference genes

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