Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G1856 Fragaria x ananassa HOM05D004120 ORTHO05D004951 8.9e-207 723.4 370 100.0
FvH4_5g21880 Fragaria vesca HOM05D004120 ORTHO05D004951 5.0e-202 707.6 370 97.8
FAN18G3415 Fragaria x ananassa HOM05D004120 ORTHO05D004951 1.1e-201 706.4 370 97.6
RcHm_v2.0_Chr7g0209431 Rosa chinensis HOM05D004120 ORTHO05D004951 2.1e-184 649.0 366 91.8
MD00G1220600 Malus domestica HOM05D004120 ORTHO05D004951 1.8e-167 592.8 369 83.2
Prupe.5G038500 Prunus persica HOM05D004120 ORTHO05D004951 1.1e-161 573.5 368 81.0
CiPaw.11G092700 Carya illinoinensis HOM05D004120 ORTHO05D004951 4.8e-152 541.6 366 79.2
Cfa012429 Carpinus fangiana HOM05D004120 ORTHO05D004951 3.1e-151 538.9 372 76.6
TAR629G2715 Trochodendron aralioides HOM05D004120 ORTHO05D004951 5.3e-151 538.1 372 77.7
GSVIVG01013166001 Vitis vinifera HOM05D004120 ORTHO05D004951 5.3e-151 538.1 371 77.6
CANSAT21G2618 Cannabis sativa HOM05D004120 ORTHO05D004951 2.0e-150 536.2 373 76.9
Manes.17G013200 Manihot esculenta HOM05D004120 ORTHO05D004951 8.4e-149 530.8 387 73.9
CSS0046330 Camellia sinensis var. sinensis HOM05D004120 ORTHO05D004951 2.5e-148 529.3 368 76.9
arahy.Tifrunner.gnm1.ann1.482M5A Arachis hypogaea HOM05D004120 ORTHO05D004951 1.2e-147 526.9 370 73.8
arahy.Tifrunner.gnm1.ann1.G7H05W Arachis hypogaea HOM05D004120 ORTHO05D004951 1.2e-147 526.9 370 73.8
CiPaw.12G063200 Carya illinoinensis HOM05D004120 ORTHO05D004951 1.6e-147 526.6 366 77.6
Hma1.2p1_0585F.1_g183700 Hydrangea macrophylla HOM05D004120 ORTHO05D004951 2.7e-147 525.8 370 74.3
Nn6g33597 Nelumbo nucifera HOM05D004120 ORTHO05D004951 1.0e-146 523.9 375 75.2
PGR031G2717 Punica granatum HOM05D004120 ORTHO05D004951 1.0e-146 523.9 377 73.7
Thecc.03G228600 Theobroma cacao HOM05D004120 ORTHO05D004951 1.3e-146 523.5 374 74.1
Ciclev10031866m.g Citrus clementina HOM05D004120 ORTHO05D004951 5.1e-146 521.5 375 74.4
Sopen08g001030 Solanum pennellii HOM05D004120 ORTHO05D004951 5.1e-146 521.5 370 72.7
PGSC0003DMG402001159 Solanum tuberosum HOM05D004120 ORTHO05D004951 5.1e-146 521.5 370 72.7
TWI81G0459 Tripterygium wilfordii HOM05D004120 ORTHO05D004951 1.5e-145 520.0 374 74.9
Dinv28953 Davidia involucrata HOM05D004120 ORTHO05D004951 1.9e-145 519.6 370 75.9
Dinv25212 Davidia involucrata HOM05D004120 ORTHO05D004951 2.5e-145 519.2 361 75.9
CAN.G1216.15 Capsicum annuum HOM05D004120 ORTHO05D004951 4.3e-145 518.5 371 73.0
QL12p005624 Quercus lobata HOM05D004120 ORTHO05D004951 7.4e-145 517.7 362 76.5
MELO3C013859.2 Cucumis melo HOM05D004120 ORTHO05D004951 1.3e-144 516.9 373 74.8
Cpa.g.sc239.7 Carica papaya HOM05D004120 ORTHO05D004951 2.1e-144 516.2 381 73.5
Rhsim11G0014500 Rhododendron simsii HOM05D004120 ORTHO05D004951 2.8e-144 515.8 379 74.4
Sed0006792 Sechium edule HOM05D004120 ORTHO05D004951 2.8e-144 515.8 370 75.1
CsaV3_3G001840 Cucumis sativus L. HOM05D004120 ORTHO05D004951 4.8e-144 515.0 374 74.6
Gohir.D08G177300 Gossypium hirsutum HOM05D004120 ORTHO05D004951 8.2e-144 514.2 371 73.0
Ca_24652_v3 Cicer arietinum L. HOM05D004120 ORTHO05D004951 1.4e-143 513.5 367 73.8
FAN13G1981 Fragaria x ananassa HOM05D004120 ORTHO05D004951 1.4e-143 513.5 269 99.3
VMungo1215G0016 Vigna mungo HOM05D004120 ORTHO05D004951 1.8e-143 513.1 372 73.1
ClCG10G001730 Citrullus lanatus HOM05D004120 ORTHO05D004951 2.4e-143 512.7 373 75.3
Lsat_1_v5_gn_6_79560 Lactuca sativa HOM05D004120 ORTHO05D004951 2.4e-143 512.7 380 71.6
Lj2g0014948 Lotus japonicus HOM05D004120 ORTHO05D004951 3.1e-143 512.3 368 73.6
Duzib084G1060 Durio zibethinus HOM05D004120 ORTHO05D004951 4.0e-143 511.9 374 73.5
EL10Ac5g12129 Beta vulgaris HOM05D004120 ORTHO05D004951 5.3e-143 511.5 375 72.5
COL.COLO4_17048 Corchorus olitorius HOM05D004120 ORTHO05D004951 5.3e-143 511.5 323 80.8
Eucgr.D02191 Eucalyptus grandis HOM05D004120 ORTHO05D004951 5.3e-143 511.5 378 73.3
Nn1g00518 Nelumbo nucifera HOM05D004120 ORTHO05D004951 5.3e-143 511.5 377 74.0
Phvul.002G007300 Phaseolus vulgaris HOM05D004120 ORTHO05D004951 1.2e-142 510.4 372 72.6
FAN08G2335 Fragaria x ananassa HOM05D004120 ORTHO05D004951 3.4e-142 508.8 269 98.5
Potri.001G143400 Populus trichocarpa HOM05D004120 ORTHO05D004951 4.5e-142 508.4 383 72.1
DCAR_008274 Daucus carota HOM05D004120 ORTHO05D004951 5.8e-142 508.1 368 71.7
Glyma.11G043400 Glycine max HOM05D004120 ORTHO05D004951 7.6e-142 507.7 374 73.0
Gohir.A08G156900 Gossypium hirsutum HOM05D004120 ORTHO05D004951 2.2e-141 506.1 373 72.4
Aqoxy3G02384 Aquilegia oxysepala HOM05D004120 ORTHO05D004951 3.8e-141 505.4 370 73.5
Gorai.004G185700 Gossypium raimondii HOM05D004120 ORTHO05D004951 1.1e-140 503.8 390 70.0
AUR62018721 Chenopodium quinoa HOM05D004120 ORTHO05D004951 1.9e-140 503.1 327 78.3
Medtr5g014430 Medicago truncatula HOM05D004120 ORTHO05D004951 4.2e-140 501.9 373 73.2
HanXRQChr03g0084021 Helianthus annuus HOM05D004120 ORTHO05D004951 5.5e-140 501.5 379 69.7
Cc08_g02620 Coffea canephora HOM05D004120 ORTHO05D004951 3.5e-139 498.8 381 71.4
Lalb_Chr16g0379111 Lupinus albus HOM05D004120 ORTHO05D004951 3.5e-139 498.8 370 70.5
Lalb_Chr05g0213941 Lupinus albus HOM05D004120 ORTHO05D004951 1.0e-138 497.3 369 71.3
TPR.G7833 Trifolium pratense HOM05D004120 ORTHO05D004951 3.9e-138 495.4 371 72.2
vmacro00332 Vaccinium macrocarpon HOM05D004120 ORTHO05D004951 3.9e-138 495.4 438 64.4
ECA240G4620 Erigeron canadensis HOM05D004120 ORTHO05D004951 5.1e-138 495.0 361 72.6
Sabra01G0111800 Salix brachista HOM05D004120 ORTHO05D004951 1.3e-136 490.3 407 66.8
Thhalv10016805m.g Eutrema salsugineum HOM05D004120 ORTHO05D004951 2.8e-136 489.2 376 68.4
C03p22720 Brassica napus HOM05D004120 ORTHO05D004951 3.7e-136 488.8 379 68.1
Oeu028027.1 Olea europaea HOM05D004120 ORTHO05D004951 4.8e-136 488.4 367 70.0
Oeu053047.1 Olea europaea HOM05D004120 ORTHO05D004951 4.8e-136 488.4 370 70.8
MSTRG.13757 Avicennia marina HOM05D004120 ORTHO05D004951 6.3e-136 488.0 337 74.8
BcaC01g05734 Brassica carinata HOM05D004120 ORTHO05D004951 1.4e-135 486.9 379 67.8
BolC3t14671H Brassica oleracea HOM05D004120 ORTHO05D004951 1.8e-135 486.5 379 67.8
Hund14402 Selenicereus undatus HOM05D004120 ORTHO05D004951 1.8e-135 486.5 348 73.6
A03p19500 Brassica napus HOM05D004120 ORTHO05D004951 3.1e-135 485.7 379 68.1
AL4G31300 Arabidopsis lyrata HOM05D004120 ORTHO05D004951 9.0e-135 484.2 372 70.2
PSO063G1634 Papaver somniferum HOM05D004120 ORTHO05D004951 9.0e-135 484.2 379 69.1
ATR0049G040 Amborella trichopoda HOM05D004120 ORTHO05D004951 1.2e-134 483.8 352 71.3
PSO782G3668 Papaver somniferum HOM05D004120 ORTHO05D004951 2.0e-134 483.0 376 68.9
BraA05t19989Z Brassica rapa HOM05D004120 ORTHO05D004951 2.6e-134 482.6 374 69.0
BraA03t11203Z Brassica rapa HOM05D004120 ORTHO05D004951 3.4e-134 482.3 379 67.5
Carub.0004s1696 Capsella rubella HOM05D004120 ORTHO05D004951 3.4e-134 482.3 381 66.4
A05p10510 Brassica napus HOM05D004120 ORTHO05D004951 5.9e-134 481.5 374 68.7
BcaB02g09465 Brassica carinata HOM05D004120 ORTHO05D004951 7.7e-134 481.1 378 68.5
AT2G35260 Arabidopsis thaliana HOM05D004120 ORTHO05D004951 1.0e-133 480.7 380 68.4
Sp4g17480 Schrenkiella parvula HOM05D004120 ORTHO05D004951 1.3e-133 480.3 381 67.5
Migut.E00930 Erythranthe guttata HOM05D004120 ORTHO05D004951 1.7e-133 479.9 314 78.0
CDE03G0015 Ceratophyllum demersum HOM05D004120 ORTHO05D004951 2.2e-133 479.6 364 70.6
Sc01g0007480 Simmondsia chinensis HOM05D004120 ORTHO05D004951 2.2e-133 479.6 351 73.2
BolC4t22936H Brassica oleracea HOM05D004120 ORTHO05D004951 3.8e-133 478.8 376 67.8
CARHR129420 Cardamine hirsuta HOM05D004120 ORTHO05D004951 6.5e-133 478.0 371 68.2
BcaC02g11630 Brassica carinata HOM05D004120 ORTHO05D004951 8.5e-133 477.6 377 67.6
C04p12920 Brassica napus HOM05D004120 ORTHO05D004951 8.5e-133 477.6 377 67.6
unitig_52.g17209 Utricularia gibba HOM05D004120 ORTHO05D004951 1.0e-130 470.7 319 76.5
THA.LOC104807951 Tarenaya hassleriana HOM05D004120 ORTHO05D004951 1.4e-130 470.3 365 67.1
Peaxi162Scf00045g00028 Petunia axillaris HOM05D004120 ORTHO05D004951 8.8e-130 467.6 370 68.6
Ah.12g054990 Amaranthus hybridus HOM05D004120 ORTHO05D004951 2.5e-129 466.1 325 74.8
unitig_699.g19781 Utricularia gibba HOM05D004120 ORTHO05D004951 7.4e-129 464.5 317 76.0
AUR62007285 Chenopodium quinoa HOM05D004120 ORTHO05D004951 8.2e-128 461.1 321 74.8
ECA246G0968 Erigeron canadensis HOM05D004120 ORTHO05D004951 2.0e-126 456.4 317 73.8
Psat2g173200 Pisum sativum HOM05D004120 ORTHO05D004951 2.6e-126 456.1 369 68.3
THA.LOC104798329 Tarenaya hassleriana HOM05D004120 ORTHO05D004951 2.6e-126 456.1 320 72.5
AL716U10010 Arabidopsis lyrata HOM05D004120 ORTHO05D004951 7.7e-126 454.5 372 67.5
Zm00001eb426630 Zea mays HOM05D004120 ORTHO05D004951 8.5e-125 451.1 279 78.1
Os03g0100030 Oryza sativa ssp. japonica HOM05D004120 ORTHO05D004951 1.1e-124 450.7 279 78.1
HPP92_022140 Vanilla planifolia HOM05D004120 ORTHO05D004951 2.5e-124 449.5 295 74.9
HPP92_022143 Vanilla planifolia HOM05D004120 ORTHO05D004951 2.5e-124 449.5 319 71.5
Thhalv10025287m.g Eutrema salsugineum HOM05D004120 ORTHO05D004951 4.2e-124 448.7 334 67.4
Aa31LG6G560 Aethionema arabicum HOM05D004120 ORTHO05D004951 4.7e-123 445.3 348 65.5
Carub.0007s2352 Capsella rubella HOM05D004120 ORTHO05D004951 1.4e-122 443.7 332 67.2
BcaNung00052 Brassica carinata HOM05D004120 ORTHO05D004951 3.0e-122 442.6 273 78.4
A01p09890 Brassica napus HOM05D004120 ORTHO05D004951 3.0e-122 442.6 386 61.4
BcaC09g51598 Brassica carinata HOM05D004120 ORTHO05D004951 5.1e-122 441.8 340 67.1
C07p49190 Brassica napus HOM05D004120 ORTHO05D004951 5.1e-122 441.8 296 73.3
BolC1t01127H Brassica oleracea HOM05D004120 ORTHO05D004951 5.1e-122 441.8 340 67.1
C01p11590 Brassica napus HOM05D004120 ORTHO05D004951 6.7e-122 441.4 340 67.1
BraA01t00933Z Brassica rapa HOM05D004120 ORTHO05D004951 6.7e-122 441.4 340 67.1
SGA_v2.0_scaffold54G19447 Striga asiatica HOM05D004120 ORTHO05D004951 1.1e-121 440.7 374 63.4
Glyma.01G198500 Glycine max HOM05D004120 ORTHO05D004951 1.5e-121 440.3 335 71.9
Aa31LG9G15290 Aethionema arabicum HOM05D004120 ORTHO05D004951 2.0e-121 439.9 417 59.2
A03p50800 Brassica napus HOM05D004120 ORTHO05D004951 2.6e-121 439.5 281 75.8
BraA03t14169Z Brassica rapa HOM05D004120 ORTHO05D004951 2.6e-121 439.5 281 75.8
CARHR224560 Cardamine hirsuta HOM05D004120 ORTHO05D004951 3.3e-121 439.1 277 76.2
Sp7g16270 Schrenkiella parvula HOM05D004120 ORTHO05D004951 3.7e-120 435.6 331 66.8
Solyc08g005010.4 Solanum lycopersicum HOM05D004120 ORTHO05D004951 4.8e-120 435.3 326 70.2
AL7G36690 Arabidopsis lyrata HOM05D004120 ORTHO05D004951 6.3e-120 434.9 279 74.2
AT4G17840 Arabidopsis thaliana HOM05D004120 ORTHO05D004951 8.2e-120 434.5 419 58.0
MD06G1033000 Malus domestica HOM05D004120 ORTHO05D004951 7.0e-111 404.8 262 79.4
Atru.chr6.1717 Acer truncatum HOM05D004120 ORTHO05D004951 1.0e-109 401.0 310 70.0
BolC7t45429H Brassica oleracea HOM05D004120 ORTHO05D004951 5.0e-109 398.7 265 75.1
SEGI_24472 Sequoiadendron giganteum HOM05D004120 ORTHO05D004951 2.7e-107 392.9 330 61.2
Haze_08240 Corylus avellana HOM05D004120 ORTHO05D004951 3.4e-105 386.0 332 66.9
Duzib205G1837 Durio zibethinus HOM05D004120 ORTHO05D004951 2.2e-101 373.2 297 69.4
Nitab4.5_0000804g0170 Nicotiana tabacum HOM05D004120 ORTHO05D004951 3.2e-100 369.4 209 86.6
Actinidia28172 Actinidia chinensis HOM05D004120 ORTHO05D004951 4.4e-89 332.4 190 88.4
Mapoly0008s0099 Marchantia polymorpha HOM05D004120 ORTHO05D004951 1.8e-87 327.0 351 48.7
Pp3c10_10980 Physcomitrium patens HOM05D004120 ORTHO05D004951 1.5e-84 317.4 270 57.4
Pp3c14_25270 Physcomitrium patens HOM05D004120 ORTHO05D004951 3.3e-84 316.2 273 57.5
unitig_744.g24311 Utricularia gibba HOM05D004120 ORTHO05D004951 3.3e-84 316.2 261 65.1
Nitab4.5_0002539g0020 Nicotiana tabacum HOM05D004120 ORTHO05D004951 1.1e-76 291.2 274 62.0
Actinidia25961 Actinidia chinensis HOM05D004120 ORTHO05D004951 1.5e-76 290.8 257 66.1
SMO356G0344 Selaginella moellendorffii HOM05D004120 ORTHO05D004951 1.3e-69 267.7 255 50.6
CDE06G0385 Ceratophyllum demersum HOM05D004120 ORTHO05D004951 2.0e-65 253.8 243 60.9
arahy.Tifrunner.gnm1.ann1.7CR4HZ Arachis hypogaea HOM05D004120 ORTHO05D004951 4.6e-62 242.7 174 70.1
arahy.Tifrunner.gnm1.ann1.K2V32T Arachis hypogaea HOM05D004120 ORTHO05D004951 7.8e-62 241.9 174 69.5
arahy.Tifrunner.gnm1.ann1.WRTU1C Arachis hypogaea HOM05D004120 ORTHO05D004951 1.5e-60 237.7 174 69.0
arahy.Tifrunner.gnm1.ann1.3C7WBJ Arachis hypogaea HOM05D004120 ORTHO05D004951 9.6e-60 235.0 130 87.7
HanXRQChr05g0153901 Helianthus annuus HOM05D004120 ORTHO05D004951 1.5e-57 227.6 162 75.9
arahy.Tifrunner.gnm1.ann1.B3D4NA Arachis hypogaea HOM05D004120 ORTHO05D004951 5.3e-42 176.0 110 77.3
arahy.Tifrunner.gnm1.ann1.4R7L3N Arachis hypogaea HOM05D004120 ORTHO05D004951 6.9e-42 175.6 98 84.7
arahy.Tifrunner.gnm1.ann1.AE9Z3E Arachis hypogaea HOM05D004120 ORTHO05D004951 2.0e-41 174.1 111 75.7
AagrBONN_evm.TU.Sc2ySwM_117.2801 Anthoceros agrestis HOM05D010715 ORTHO05D004951 3.5e-38 163.3 157 53.5
arahy.Tifrunner.gnm1.ann1.RCE8PR Arachis hypogaea HOM05D004120 ORTHO05D004951 2.4e-34 150.6 131 61.8
arahy.Tifrunner.gnm1.ann1.E125G1 Arachis hypogaea HOM05D004120 ORTHO05D004951 2.5e-31 140.6 72 88.9
arahy.Tifrunner.gnm1.ann1.BQ9W36 Arachis hypogaea HOM05D004120 ORTHO05D004951 1.6e-30 137.9 72 86.1
arahy.Tifrunner.gnm1.ann1.U1DJ88 Arachis hypogaea HOM05D004120 ORTHO05D007788 1.6e-30 137.9 75 86.7
RcHm_v2.0_Chr6g0284251 Rosa chinensis HOM05D004120 ORTHO05D004951 8.7e-29 132.1 72 88.9
Aa31sc618G30 Aethionema arabicum HOM05D004120 ORTHO05D004951 3.3e-28 130.2 186 45.7
arahy.Tifrunner.gnm1.ann1.L0EJKI Arachis hypogaea HOM05D004120 ORTHO05D004951 5.3e-26 122.9 62 87.1
AagrBONN_evm.TU.Sc2ySwM_117.3803 Anthoceros agrestis HOM05D004120 ORTHO05D004951 3.4e-25 120.2 102 56.9
CBR_g56906 Chara braunii HOM05D004120 ORTHO05D004951 3.4e-25 120.2 114 46.5
arahy.Tifrunner.gnm1.ann1.H82JQN Arachis hypogaea HOM05D004120 ORTHO05D021518 1.1e-23 115.2 88 64.8
CBR_g19263 Chara braunii HOM05D004120 ORTHO05D004951 7.4e-20 102.4 141 41.1
arahy.Tifrunner.gnm1.ann1.JI8VIY Arachis hypogaea HOM05D004120 ORTHO05D021518 1.3e-19 101.7 104 54.8
EL10Ac1g01819 Beta vulgaris HOM05D004120 ORTHO05D023811 1.3e-19 101.7 69 78.3
arahy.Tifrunner.gnm1.ann1.NR0HVE Arachis hypogaea HOM05D004120 ORTHO05D021518 6.9e-18 95.9 57 86.0
AUR62039713 Chenopodium quinoa HOM05D004317 ORTHO05D005031 5.0e-16 89.7 55 81.8
CAN.G36.13 Capsicum annuum HOM05D004120 ORTHO05D004951 5.1e-13 79.7 59 62.7
CAN.G399.4 Capsicum annuum HOM05D004120 ORTHO05D004951 5.1e-13 79.7 55 72.7
Aa31sc185G30 Aethionema arabicum HOM05D004120 ORTHO05D004951 4.2e-07 60.1 107 37.4
A01p32880 Brassica napus HOM05D004120 ORTHO05D023811 2.1e-06 57.8 28 92.9
A06p35780 Brassica napus HOM05D004120 ORTHO05D023811 2.1e-06 57.8 28 92.9
BraA01t03409Z Brassica rapa HOM05D004120 ORTHO05D023811 2.1e-06 57.8 28 92.9


User provided reference genes

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