Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G1757 Fragaria x ananassa HOM05D003594 ORTHO05D004268 0.0e+00 1593.9 832 100.0
FAN18G3192 Fragaria x ananassa HOM05D003594 ORTHO05D004268 0.0e+00 1493.0 834 93.2
FAN18G4146 Fragaria x ananassa HOM05D003594 ORTHO05D004268 0.0e+00 1491.9 834 93.2
FvH4_5g22640 Fragaria vesca HOM05D003594 ORTHO05D004268 0.0e+00 1482.6 834 92.9
FAN08G1578 Fragaria x ananassa HOM05D003594 ORTHO05D004268 0.0e+00 1458.7 829 93.2
RcHm_v2.0_Chr7g0211051 Rosa chinensis HOM05D003594 ORTHO05D004268 0.0e+00 1333.9 831 83.0
Prupe.3G003400 Prunus persica HOM05D003594 ORTHO05D004268 1.8e-284 982.6 872 61.7
MD17G1284000 Malus domestica HOM05D003594 ORTHO05D004268 9.1e-268 927.2 884 59.2
CiPaw.13G039500 Carya illinoinensis HOM05D003594 ORTHO05D004268 4.0e-239 832.0 819 56.7
Cfa011279 Carpinus fangiana HOM05D003594 ORTHO05D004268 2.7e-235 819.3 803 56.7
QL04p046058 Quercus lobata HOM05D003594 ORTHO05D004268 1.6e-232 810.1 861 53.0
Dinv11846 Davidia involucrata HOM05D003594 ORTHO05D004268 8.9e-231 804.3 877 52.6
CANSAT56G3624 Cannabis sativa HOM05D003594 ORTHO05D004268 3.7e-221 772.3 850 51.6
TAR622G0410 Trochodendron aralioides HOM05D003594 ORTHO05D004268 1.1e-220 770.8 728 57.1
CSS0019720 Camellia sinensis var. sinensis HOM05D003594 ORTHO05D004268 3.6e-216 755.7 860 51.2
CSS0031708 Camellia sinensis var. sinensis HOM05D003594 ORTHO05D004268 1.1e-215 754.2 854 50.4
Manes.11G108901 Manihot esculenta HOM05D003594 ORTHO05D004268 2.0e-214 750.0 780 52.8
Nn4g23115 Nelumbo nucifera HOM05D003594 ORTHO05D004268 7.8e-211 738.0 729 54.9
Lj3C928G2 Lonicera japonica HOM05D003594 ORTHO05D004268 1.1e-209 734.2 842 50.2
Actinidia06697 Actinidia chinensis HOM05D003594 ORTHO05D004268 2.9e-205 719.5 880 49.3
Potri.010G238000 Populus trichocarpa HOM05D003594 ORTHO05D004268 1.6e-203 713.8 877 47.8
TWI38G1480 Tripterygium wilfordii HOM05D003594 ORTHO05D004268 8.7e-202 708.0 773 51.1
Thecc.10G111800 Theobroma cacao HOM05D003594 ORTHO05D004268 1.9e-201 706.8 883 48.4
Gohir.A06G169100 Gossypium hirsutum HOM05D003594 ORTHO05D004268 2.5e-201 706.4 847 47.1
PSO478G3548 Papaver somniferum HOM05D003594 ORTHO05D004268 2.5e-201 706.4 733 53.1
Sabra10G0186200 Salix brachista HOM05D003594 ORTHO05D004268 2.5e-201 706.4 872 47.0
PSO017G2985 Papaver somniferum HOM05D003594 ORTHO05D004268 1.4e-199 700.7 732 53.3
Rhsim03G0098900 Rhododendron simsii HOM05D003594 ORTHO05D004268 1.8e-199 700.3 890 47.8
Duzib052G0830 Durio zibethinus HOM05D003594 ORTHO05D004268 3.8e-197 692.6 874 47.0
Glyma.07G058700 Glycine max HOM05D003594 ORTHO05D004268 1.1e-196 691.0 776 50.0
Glyma.16G027600 Glycine max HOM05D003594 ORTHO05D004268 2.1e-195 686.8 776 50.4
Cc02_g29780 Coffea canephora HOM05D003594 ORTHO05D004268 4.6e-195 685.6 879 47.1
Gorai.010G208000 Gossypium raimondii HOM05D003594 ORTHO05D004268 8.7e-194 681.4 851 45.9
Gohir.D06G176700 Gossypium hirsutum HOM05D003594 ORTHO05D004268 9.6e-193 677.9 774 48.4
Lsat_1_v5_gn_2_104580 Lactuca sativa HOM05D003594 ORTHO05D004268 1.3e-192 677.6 836 46.9
Lalb_Chr10g0100231 Lupinus albus HOM05D003594 ORTHO05D004268 4.8e-192 675.6 866 47.0
Ciclev10027803m.g Citrus clementina HOM05D003594 ORTHO05D004268 1.1e-191 674.5 860 46.7
GSVIVG01032568001 Vitis vinifera HOM05D003594 ORTHO05D004268 1.1e-191 674.5 796 51.1
COL.COLO4_28858 Corchorus olitorius HOM05D003594 ORTHO05D004268 2.2e-189 666.8 883 46.0
Aqoxy3G00687_Aqoxy3G00688 Aquilegia oxysepala HOM05D003594 ORTHO05D004268 1.6e-187 660.6 743 50.9
VMungo0331G0994 Vigna mungo HOM05D003594 ORTHO05D004268 2.1e-187 660.2 778 48.6
Sopen11g002930 Solanum pennellii HOM05D003594 ORTHO05D004268 8.7e-186 654.8 862 45.1
Solyc11g007010.2 Solanum lycopersicum HOM05D003594 ORTHO05D004268 1.5e-185 654.1 862 44.8
ClCG09G007450 Citrullus lanatus HOM05D003594 ORTHO05D004268 4.3e-185 652.5 839 46.6
ECA238G3867 Erigeron canadensis HOM05D003594 ORTHO05D004268 9.6e-185 651.4 842 46.0
Sed0011677 Sechium edule HOM05D003594 ORTHO05D004268 1.8e-183 647.1 828 46.5
Medtr3g075460 Medicago truncatula HOM05D003594 ORTHO05D004268 4.0e-183 646.0 700 51.3
Ca_23589_v3 Cicer arietinum L. HOM05D003594 ORTHO05D004268 1.5e-182 644.0 890 43.9
Peaxi162Scf00173g00417 Petunia axillaris HOM05D003594 ORTHO05D004268 5.8e-182 642.1 727 47.7
Lj3g0004598 Lotus japonicus HOM05D003594 ORTHO05D004268 1.0e-181 641.3 769 48.5
DCAR_006339 Daucus carota HOM05D003594 ORTHO05D004268 2.2e-181 640.2 777 47.2
Medtr8g028030 Medicago truncatula HOM05D003594 ORTHO05D004268 1.6e-179 634.0 882 45.1
Sed0007749 Sechium edule HOM05D003594 ORTHO05D004268 2.1e-179 633.6 832 45.9
PGSC0003DMG400023977 Solanum tuberosum HOM05D003594 ORTHO05D004268 5.1e-178 629.0 889 42.3
THA.LOC104820658 Tarenaya hassleriana HOM05D003594 ORTHO05D004268 1.9e-177 627.1 705 49.5
Phvul.010G110700 Phaseolus vulgaris HOM05D003594 ORTHO05D004268 2.5e-177 626.7 778 48.3
Migut.F00912 Erythranthe guttata HOM05D003594 ORTHO05D004268 2.1e-176 623.6 847 43.8
Nitab4.5_0005622g0060 Nicotiana tabacum HOM05D003594 ORTHO05D004268 2.8e-176 623.2 898 41.5
Sc06g0002330 Simmondsia chinensis HOM05D003594 ORTHO05D004268 4.8e-176 622.5 852 42.4
ClCG05G018390 Citrullus lanatus HOM05D003594 ORTHO05D004268 1.5e-174 617.5 889 44.3
Nitab4.5_0001437g0090 Nicotiana tabacum HOM05D003594 ORTHO05D004268 2.6e-174 616.7 736 45.9
Psat4g159240 Pisum sativum HOM05D003594 ORTHO05D004268 2.6e-174 616.7 653 52.8
Ah.04g162260 Amaranthus hybridus HOM05D003594 ORTHO05D004268 6.5e-173 612.1 868 41.9
Carub.0001s2847 Capsella rubella HOM05D003594 ORTHO05D004268 2.5e-172 610.1 848 44.7
Eucgr.J00989 Eucalyptus grandis HOM05D003594 ORTHO05D004268 4.2e-172 609.4 803 46.5
HanXRQChr11g0342181 Helianthus annuus HOM05D003594 ORTHO05D004268 5.5e-172 609.0 835 42.8
Oeu025587.1 Olea europaea HOM05D003594 ORTHO05D004268 9.3e-172 608.2 935 41.6
Lj1g0028024 Lotus japonicus HOM05D003594 ORTHO05D004268 1.2e-171 607.8 845 45.3
Cc02_g09740 Coffea canephora HOM05D003594 ORTHO05D004268 5.1e-170 602.4 648 52.0
Thhalv10006813m.g Eutrema salsugineum HOM05D003594 ORTHO05D004268 3.7e-168 596.3 831 43.6
MBI02_g14487_MAGBIO Magnolia biondii HOM05D003594 ORTHO05D004268 1.4e-167 594.3 888 43.8
arahy.Tifrunner.gnm1.ann1.8EA83L Arachis hypogaea HOM05D003594 ORTHO05D004268 1.8e-167 594.0 787 45.7
ATR0737G134 Amborella trichopoda HOM05D003594 ORTHO05D004268 2.4e-167 593.6 734 47.1
TPR.G8757 Trifolium pratense HOM05D003594 ORTHO05D004268 9.4e-164 581.6 618 51.6
MD09G1289100 Malus domestica HOM05D003594 ORTHO05D004268 2.3e-162 577.0 530 60.6
MELO3C012354.2 Cucumis melo HOM05D003594 ORTHO05D004268 6.7e-162 575.5 841 42.9
Nn3g17199 Nelumbo nucifera HOM05D003594 ORTHO05D004268 4.3e-161 572.8 536 57.5
A09p36300 Brassica napus HOM05D003594 ORTHO05D004268 1.4e-159 567.8 853 41.0
Cpa.g.sc183.16 Carica papaya HOM05D003594 ORTHO05D004268 5.3e-159 565.8 628 52.1
Dinv06533 Davidia involucrata HOM05D003594 ORTHO05D004268 9.1e-159 565.1 802 43.4
CARHR029630 Cardamine hirsuta HOM05D003594 ORTHO05D004268 1.2e-158 564.7 774 43.9
BraA09t39154Z Brassica rapa HOM05D003594 ORTHO05D004268 4.5e-158 562.8 854 40.6
BcaC05g27050 Brassica carinata HOM05D003594 ORTHO05D004268 1.0e-157 561.6 855 40.6
BolC5t31639H Brassica oleracea HOM05D003594 ORTHO05D004268 1.0e-157 561.6 855 40.6
C05p29080 Brassica napus HOM05D003594 ORTHO05D004268 1.3e-157 561.2 855 40.6
Aa31sc91G80 Aethionema arabicum HOM05D003594 ORTHO05D004268 2.9e-157 560.1 850 42.2
AL1G44160 Arabidopsis lyrata HOM05D003594 ORTHO05D004268 5.0e-157 559.3 729 46.1
AT1G30240 Arabidopsis thaliana HOM05D003594 ORTHO05D004268 6.5e-157 558.9 858 42.2
SalBow6G4638 Salvia bowleyana HOM05D003594 ORTHO05D004268 8.5e-157 558.5 875 39.5
BcaB07g32622 Brassica carinata HOM05D003594 ORTHO05D004268 1.1e-156 558.1 838 42.1
BolC3t19907H Brassica oleracea HOM05D003594 ORTHO05D004268 1.1e-156 558.1 648 47.8
BcaC01g00173 Brassica carinata HOM05D003594 ORTHO05D004268 2.5e-156 557.0 648 47.8
C03p76500 Brassica napus HOM05D003594 ORTHO05D004268 4.2e-156 556.2 648 47.7
BcaB03g12203 Brassica carinata HOM05D003594 ORTHO05D004268 5.5e-156 555.8 648 47.8
HPP92_013069 Vanilla planifolia HOM05D003594 ORTHO05D004268 9.4e-156 555.1 782 41.8
PGR044G2128 Punica granatum HOM05D003594 ORTHO05D004268 1.2e-155 554.7 859 40.7
Sp1g26080 Schrenkiella parvula HOM05D003594 ORTHO05D004268 1.4e-154 551.2 857 41.0
EL10Ac4g08659 Beta vulgaris HOM05D003594 ORTHO05D004268 8.2e-152 542.0 869 40.2
A08p24610 Brassica napus HOM05D003594 ORTHO05D004268 1.5e-150 537.7 843 40.1
arahy.Tifrunner.gnm1.ann1.Q3AX4Y Arachis hypogaea HOM05D003594 ORTHO05D004268 2.0e-150 537.3 840 41.5
AUR62042073 Chenopodium quinoa HOM05D003594 ORTHO05D004268 5.5e-148 529.3 736 43.5
CDE09G0981 Ceratophyllum demersum HOM05D003594 ORTHO05D004268 3.0e-146 523.5 893 40.8
SGA_v2.0_scaffold295G47526 Striga asiatica HOM05D003594 ORTHO05D004268 8.5e-141 505.4 923 36.1
Os05g0295900 Oryza sativa ssp. japonica HOM05D003594 ORTHO05D004268 8.8e-138 495.4 773 40.9
BraA08t34416Z Brassica rapa HOM05D003594 ORTHO05D004268 1.2e-137 495.0 607 46.5
CAN.G645.3 Capsicum annuum HOM05D003594 ORTHO05D004268 2.0e-137 494.2 656 45.3
AUR62043305 Chenopodium quinoa HOM05D003594 ORTHO05D004268 2.2e-133 480.7 722 42.5
Gohir.D09G017550 Gossypium hirsutum HOM05D003594 ORTHO05D004268 9.1e-127 458.8 718 39.6
CsaV3_5G035440 Cucumis sativus L. HOM05D003594 ORTHO05D004268 5.9e-126 456.1 659 42.8
CsaV3_5G035480 Cucumis sativus L. HOM05D003594 ORTHO05D004268 5.9e-126 456.1 659 42.8
Gorai.006G020600 Gossypium raimondii HOM05D003594 ORTHO05D004268 5.0e-125 453.0 718 39.4
MD09G1292100 Malus domestica HOM05D003594 ORTHO05D004268 1.8e-119 434.5 507 52.7
Mapoly0108s0040 Marchantia polymorpha HOM05D003594 ORTHO05D004268 4.7e-115 419.9 666 39.2
Atru.chr12.1013 Acer truncatum HOM05D003594 ORTHO05D004268 1.9e-111 407.9 616 42.4
Cc02_g09730 Coffea canephora HOM05D003594 ORTHO05D004268 2.0e-110 404.4 354 61.0
Pp3c8_9490 Physcomitrium patens HOM05D003594 ORTHO05D004268 1.0e-109 402.1 685 37.4
Cc02_g29810 Coffea canephora HOM05D003594 ORTHO05D004268 1.1e-108 398.7 725 38.3
CsaV3_5G035460 Cucumis sativus L. HOM05D003594 ORTHO05D004268 5.6e-108 396.4 444 50.0
Phvul.003G001400 Phaseolus vulgaris HOM05D003594 ORTHO05D004268 6.4e-104 382.9 555 46.3
Zm00001eb231330 Zea mays HOM05D003594 ORTHO05D004268 4.3e-100 370.2 672 38.2
SMO364G0406 Selaginella moellendorffii HOM05D003594 ORTHO05D004268 4.4e-97 360.1 708 35.3
Pp3c15_8100 Physcomitrium patens HOM05D003594 ORTHO05D004268 2.7e-94 350.9 702 34.6
Pp3c15_8103 Physcomitrium patens HOM05D003594 ORTHO05D004268 2.7e-94 350.9 702 34.6
Actinidia18596 Actinidia chinensis HOM05D003594 ORTHO05D004268 3.0e-93 347.4 453 46.1
Hund23993 Selenicereus undatus HOM05D003594 ORTHO05D004268 4.0e-90 337.0 449 45.2
Hund22286 Selenicereus undatus HOM05D003594 ORTHO05D004268 6.8e-90 336.3 481 43.9
TWI63G1716 Tripterygium wilfordii HOM05D003594 ORTHO05D004268 6.6e-85 319.7 272 56.2
Hma1.2p1_0145F.1_g065330 Hydrangea macrophylla HOM05D003594 ORTHO05D004268 1.9e-84 318.2 338 54.4
Haze_02500 Corylus avellana HOM05D003594 ORTHO05D004268 2.9e-80 304.3 248 60.5
CBR_g29875 Chara braunii HOM05D003594 ORTHO05D000497 4.2e-79 300.4 793 31.9
CBR_g45421 Chara braunii HOM05D003594 ORTHO05D004268 6.9e-74 283.1 824 31.1
Aqoxy2G02949 Aquilegia oxysepala HOM05D003594 ORTHO05D004268 4.0e-66 257.3 803 30.1
Gohir.A09G018100 Gossypium hirsutum HOM05D003594 ORTHO05D004268 3.9e-61 240.7 448 36.6
CsaV3_5G035510 Cucumis sativus L. HOM05D003594 ORTHO05D004268 2.8e-59 234.6 224 54.9
Os06g0343900 Oryza sativa ssp. japonica HOM05D003594 ORTHO05D004268 4.5e-57 227.3 333 39.9
GSVIVG01011385001 Vitis vinifera HOM05D003594 ORTHO05D004268 5.9e-57 226.9 511 37.0
Haze_02506 Corylus avellana HOM05D003594 ORTHO05D004268 1.6e-54 218.8 241 51.9
Atru.chr12.1014 Acer truncatum HOM05D003594 ORTHO05D004268 1.3e-48 199.1 142 66.9
MSTRG.27538 Avicennia marina HOM05D003594 ORTHO05D004268 1.5e-41 175.6 141 56.7
CsaV3_5G035420 Cucumis sativus L. HOM05D003594 ORTHO05D004268 7.7e-41 173.3 155 56.1
MSTRG.27536 Avicennia marina HOM05D003594 ORTHO05D004268 3.8e-40 171.0 271 39.1
SEGI_27789 Sequoiadendron giganteum HOM05D003594 ORTHO05D004268 6.5e-40 170.2 195 50.3
AagrBONN_evm.TU.Sc2ySwM_228.2673 Anthoceros agrestis HOM05D003594 ORTHO05D004268 2.1e-38 165.2 342 36.5
MD09G1289200 Malus domestica HOM05D003594 ORTHO05D004268 2.7e-38 164.9 121 65.3
ATR0564G271 Amborella trichopoda HOM05D003594 ORTHO05D004268 2.3e-37 161.8 426 32.2
Gohir.A09G018150 Gossypium hirsutum HOM05D003594 ORTHO05D004268 2.6e-36 158.3 194 45.9
Nn3g17196 Nelumbo nucifera HOM05D003594 ORTHO05D004268 3.3e-36 157.9 192 47.4
Cc02_g29830 Coffea canephora HOM05D003594 ORTHO05D004268 6.3e-35 153.7 139 57.6
Hund22291 Selenicereus undatus HOM05D003594 ORTHO05D004268 6.3e-35 153.7 276 38.0
QL04p046254 Quercus lobata HOM05D003594 ORTHO05D004268 1.8e-34 152.1 232 41.4
Hma1.2p1_2419F.1_g321820 Hydrangea macrophylla HOM05D003594 ORTHO05D004268 2.6e-33 148.3 116 59.5
Psat6g218640 Pisum sativum HOM05D001312 ORTHO05D001832 4.5e-33 147.5 268 38.8
MSTRG.11586 Avicennia marina HOM05D003594 ORTHO05D004268 1.3e-32 146.0 119 55.5
SEGI_05252 Sequoiadendron giganteum HOM05D003594 ORTHO05D004268 4.2e-31 141.0 248 39.1
SHI24306 Sapria himalayana HOM05D003594 ORTHO05D004268 3.6e-30 137.9 237 38.8
Prupe.6G159300 Prunus persica HOM05D003594 ORTHO05D004268 5.7e-28 130.6 182 42.9
BcaB08g34816 Brassica carinata HOM05D002573 ORTHO05D002918 8.2e-27 126.7 151 43.7
A02p30260 Brassica napus HOM05D003594 ORTHO05D004268 1.1e-26 126.3 98 58.2
A03p57890 Brassica napus HOM05D003594 ORTHO05D004268 1.1e-26 126.3 98 58.2
CsaV3_5G035520 Cucumis sativus L. HOM05D003594 ORTHO05D004268 2.7e-25 121.7 181 41.4
SHI24302 Sapria himalayana HOM05D003594 ORTHO05D004268 7.7e-25 120.2 134 47.8
C02p37120 Brassica napus HOM05D003594 ORTHO05D004268 6.5e-24 117.1 111 50.5
AagrBONN_evm.TU.Sc2ySwM_228.2672 Anthoceros agrestis HOM05D003594 ORTHO05D004268 8.0e-22 110.2 125 46.4
Actinidia36695 Actinidia chinensis HOM05D003594 ORTHO05D004268 1.5e-20 105.9 279 33.7
BolC5t29265H Brassica oleracea HOM05D003594 ORTHO05D004268 1.1e-18 99.8 80 53.8
C03p91380 Brassica napus HOM05D003594 ORTHO05D004268 1.6e-17 95.9 80 52.5
BolC3t21454H Brassica oleracea HOM05D003594 ORTHO05D004268 1.6e-17 95.9 80 52.5
C03p15410 Brassica napus HOM05D003594 ORTHO05D004268 2.0e-17 95.5 87 48.3
Hma1.2p1_0053F.1_g030920 Hydrangea macrophylla HOM05D003594 ORTHO05D004268 7.7e-17 93.6 75 66.7
BolC7t45516H Brassica oleracea HOM05D003594 ORTHO05D004268 1.0e-16 93.2 80 51.2
Haze_25332 Corylus avellana HOM05D003594 ORTHO05D004268 1.0e-16 93.2 89 52.8
Haze_02499 Corylus avellana HOM05D003594 ORTHO05D004268 1.7e-16 92.4 89 51.7
SHI24307 Sapria himalayana HOM05D003594 ORTHO05D004268 1.5e-15 89.4 175 40.0
BraA03t14853Z Brassica rapa HOM05D003594 ORTHO05D004268 6.1e-14 84.0 70 52.9
C03p54150 Brassica napus HOM05D003594 ORTHO05D004268 1.4e-13 82.8 70 51.4
Actinidia36694 Actinidia chinensis HOM05D003594 ORTHO05D004268 8.8e-13 80.1 60 61.7
CAN.G645.4 Capsicum annuum HOM05D003594 ORTHO05D004268 5.7e-12 77.4 88 45.5
Psat6g091000 Pisum sativum HOM05D003335 ORTHO05D003853 1.2e-09 69.7 62 56.5
Psat6g226760 Pisum sativum HOM05D003335 ORTHO05D003853 1.2e-09 69.7 64 51.6
CDE02G4417 Ceratophyllum demersum HOM05D003594 ORTHO05D004268 2.0e-09 68.9 251 29.1
SHI24305 Sapria himalayana HOM05D000023 ORTHO05D000014 3.5e-09 68.2 56 58.9
TPR.G23930 Trifolium pratense HOM05D003594 ORTHO05D004268 4.5e-09 67.8 261 29.1
Ciclev10030203m.g Citrus clementina HOM05D003594 ORTHO05D026973 2.3e-08 65.5 115 42.6
Haze_02504 Corylus avellana HOM05D003594 ORTHO05D026973 6.6e-08 63.9 97 49.5
Glyma.14G085550 Glycine max HOM05D003594 ORTHO05D004268 1.1e-07 63.2 55 49.1
QL04p046243 Quercus lobata HOM05D003594 ORTHO05D026973 1.9e-07 62.4 98 52.0
MSTRG.26055 Avicennia marina HOM05D003594 ORTHO05D004268 1.6e-06 59.3 98 32.7


User provided reference genes

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