Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G1728 Fragaria x ananassa HOM05D000325 ORTHO05D022701 4.8e-51 204.1 98 100.0
FAN12G0046 Fragaria x ananassa HOM05D000325 ORTHO05D022701 1.1e-15 86.7 44 95.5
FAN19G1309 Fragaria x ananassa HOM05D000325 ORTHO05D002025 2.6e-12 75.5 47 80.9
FAN26G1424 Fragaria x ananassa HOM05D000325 ORTHO05D002025 2.6e-12 75.5 47 80.9
RcHm_v2.0_Chr2g0090521 Rosa chinensis HOM05D000325 ORTHO05D002025 3.4e-12 75.1 48 77.1
FvH4_1g04930 Fragaria vesca HOM05D000325 ORTHO05D002025 5.7e-12 74.3 47 78.7
FAN23G2984 Fragaria x ananassa HOM05D000325 ORTHO05D002025 9.8e-12 73.6 47 78.7
FAN28G3027 Fragaria x ananassa HOM05D000325 ORTHO05D002025 9.8e-12 73.6 44 84.1
PGR142G0567 Punica granatum HOM05D000325 ORTHO05D002025 3.1e-10 68.6 47 70.2
FAN09G2622 Fragaria x ananassa HOM05D030726 ORTHO05D022701 5.4e-10 67.8 58 62.1
MD15G1186300 Malus domestica HOM05D000325 ORTHO05D002025 2.0e-09 65.9 46 69.6
MD02G1047800 Malus domestica HOM05D000325 ORTHO05D002025 1.0e-08 63.5 45 68.9
Prupe.7G230400 Prunus persica HOM05D000325 ORTHO05D002025 2.2e-08 62.4 46 67.4
Hma1.2p1_2039F.1_g312150 Hydrangea macrophylla HOM05D000325 ORTHO05D002025 2.9e-08 62.0 74 45.9
CiPaw.03G232600 Carya illinoinensis HOM05D000325 ORTHO05D002025 3.8e-08 61.6 45 66.7
Dinv36623 Davidia involucrata HOM05D000325 ORTHO05D002025 3.8e-08 61.6 61 54.1
MD17G1194200 Malus domestica HOM05D000325 ORTHO05D002025 3.8e-08 61.6 77 49.4
QL08p016922 Quercus lobata HOM05D000325 ORTHO05D002025 3.8e-08 61.6 49 59.2
CSS0015846 Camellia sinensis var. sinensis HOM05D000325 ORTHO05D002025 8.5e-08 60.5 74 47.3
QL02p085481 Quercus lobata HOM05D000325 ORTHO05D002025 8.5e-08 60.5 45 64.4
Sed0001455 Sechium edule HOM05D000325 ORTHO05D002025 1.9e-07 59.3 46 60.9
Cfa002076 Carpinus fangiana HOM05D000325 ORTHO05D002025 2.5e-07 58.9 74 50.0
Cfa003260 Carpinus fangiana HOM05D000325 ORTHO05D002025 2.5e-07 58.9 45 64.4
CiPaw.01G238500 Carya illinoinensis HOM05D000325 ORTHO05D002025 2.5e-07 58.9 74 47.3
Haze_16402 Corylus avellana HOM05D000325 ORTHO05D002025 2.5e-07 58.9 74 50.0
Medtr4g012540 Medicago truncatula HOM05D000325 ORTHO05D002025 2.5e-07 58.9 58 53.4
Psat1g042440 Pisum sativum HOM05D000325 ORTHO05D002025 2.5e-07 58.9 41 68.3
Dinv41597 Davidia involucrata HOM05D000325 ORTHO05D002025 3.2e-07 58.5 61 50.8
Lalb_Chr09g0331171 Lupinus albus HOM05D000325 ORTHO05D002025 3.2e-07 58.5 41 70.7
DCAR_028714 Daucus carota HOM05D000325 ORTHO05D002025 4.2e-07 58.2 83 44.6
Dinv30504 Davidia involucrata HOM05D000325 ORTHO05D002025 4.2e-07 58.2 73 43.8
Medtr2g102030 Medicago truncatula HOM05D000325 ORTHO05D002025 4.2e-07 58.2 74 47.3
Nitab4.5_0000017g0090 Nicotiana tabacum HOM05D000325 ORTHO05D002025 4.2e-07 58.2 62 54.8
Nitab4.5_0003316g0010 Nicotiana tabacum HOM05D000325 ORTHO05D002025 4.2e-07 58.2 62 54.8
Peaxi162Scf00560g00113 Petunia axillaris HOM05D000325 ORTHO05D002025 4.2e-07 58.2 62 54.8
Ca_01120_v3 Cicer arietinum L. HOM05D006908 ORTHO05D008662 5.5e-07 57.8 78 42.3
Haze_25711 Corylus avellana HOM05D000325 ORTHO05D002025 5.5e-07 57.8 45 62.2
Dinv38041 Davidia involucrata HOM05D000325 ORTHO05D002025 5.5e-07 57.8 61 50.8
ECA232G3144 Erigeron canadensis HOM05D000325 ORTHO05D002025 5.5e-07 57.8 58 53.4
TAR636G1436 Trochodendron aralioides HOM05D000325 ORTHO05D002025 5.5e-07 57.8 74 45.9
ClCG06G008500 Citrullus lanatus HOM05D000325 ORTHO05D002025 7.2e-07 57.4 46 60.9
Lsat_1_v5_gn_8_95460 Lactuca sativa HOM05D000325 ORTHO05D002025 7.2e-07 57.4 58 53.4
MD09G1212300 Malus domestica HOM05D000325 ORTHO05D002025 7.2e-07 57.4 77 45.5
Sed0022110 Sechium edule HOM05D000325 ORTHO05D002025 7.2e-07 57.4 46 65.2
arahy.Tifrunner.gnm1.ann1.L3KDU2 Arachis hypogaea HOM05D000325 ORTHO05D002025 9.4e-07 57.0 41 65.9
arahy.Tifrunner.gnm1.ann1.ZLIL7H Arachis hypogaea HOM05D000325 ORTHO05D002025 9.4e-07 57.0 41 65.9
MSTRG.19591 Avicennia marina HOM05D000325 ORTHO05D002025 9.4e-07 57.0 70 48.6
Migut.I00875 Erythranthe guttata HOM05D000325 ORTHO05D002025 9.4e-07 57.0 61 50.8
Eucgr.C01045 Eucalyptus grandis HOM05D000325 ORTHO05D002025 9.4e-07 57.0 45 64.4
Prupe.3G070200 Prunus persica HOM05D000325 ORTHO05D002025 9.4e-07 57.0 58 51.7
Cc06_g09620 Coffea canephora HOM05D000325 ORTHO05D002025 1.2e-06 56.6 53 58.5
Solyc07g022860.4 Solanum lycopersicum HOM05D000325 ORTHO05D002025 1.2e-06 56.6 58 56.9
Sopen07g016130 Solanum pennellii HOM05D000325 ORTHO05D002025 1.2e-06 56.6 58 56.9
Thecc.09G111100 Theobroma cacao HOM05D000325 ORTHO05D002025 1.2e-06 56.6 45 62.2
CANSAT56G0184 Cannabis sativa HOM05D000325 ORTHO05D002025 1.6e-06 56.2 48 56.2
Cc04_g03320 Coffea canephora HOM05D000325 ORTHO05D002025 1.6e-06 56.2 61 49.2
CsaV3_1G030500 Cucumis sativus L. HOM05D000325 ORTHO05D002025 1.6e-06 56.2 46 58.7
Eucgr.C01046 Eucalyptus grandis HOM05D000325 ORTHO05D002025 1.6e-06 56.2 45 64.4
Glyma.07G005901 Glycine max HOM05D000325 ORTHO05D002025 1.6e-06 56.2 60 53.3
HanXRQChr06g0180021 Helianthus annuus HOM05D000325 ORTHO05D002025 1.6e-06 56.2 58 51.7
Medtr6g086635 Medicago truncatula HOM05D000325 ORTHO05D002025 1.6e-06 56.2 41 63.4
SGA_v2.0_scaffold34G13907 Striga asiatica HOM05D000325 ORTHO05D002025 1.6e-06 56.2 45 60.0
SGA_v2.0_scaffold5G02581 Striga asiatica HOM05D000325 ORTHO05D002025 1.6e-06 56.2 45 60.0
CSS0013205 Camellia sinensis var. sinensis HOM05D000325 ORTHO05D002025 2.1e-06 55.8 46 58.7
Ca_11689_v3 Cicer arietinum L. HOM05D000325 ORTHO05D002025 2.1e-06 55.8 58 53.4
Glyma.08G206300 Glycine max HOM05D000325 ORTHO05D002025 2.1e-06 55.8 58 56.9
Gohir.A06G062200 Gossypium hirsutum HOM05D000325 ORTHO05D002025 2.1e-06 55.8 48 58.3
Gohir.D05G129900 Gossypium hirsutum HOM05D000325 ORTHO05D002025 2.1e-06 55.8 61 49.2
Gohir.D06G060500 Gossypium hirsutum HOM05D000325 ORTHO05D002025 2.1e-06 55.8 48 58.3
Gorai.009G133700 Gossypium raimondii HOM05D000325 ORTHO05D002025 2.1e-06 55.8 61 49.2
SalBow2G0660 Salvia bowleyana HOM05D000325 ORTHO05D002025 2.1e-06 55.8 46 58.7
TPR.G35278 Trifolium pratense HOM05D000325 ORTHO05D002025 2.1e-06 55.8 41 61.0
TAR383G1009 Trochodendron aralioides HOM05D000325 ORTHO05D002025 2.1e-06 55.8 74 43.2
GSVIVG01015396001 Vitis vinifera HOM05D000325 ORTHO05D002025 2.1e-06 55.8 58 48.3
CSS0023025 Camellia sinensis var. sinensis HOM05D000325 ORTHO05D002025 2.7e-06 55.5 46 58.7
CSS0045642 Camellia sinensis var. sinensis HOM05D000325 ORTHO05D002025 2.7e-06 55.5 46 58.7
COL.COLO4_34915 Corchorus olitorius HOM05D000325 ORTHO05D002025 2.7e-06 55.5 45 60.0
MELO3C025335.2 Cucumis melo HOM05D000325 ORTHO05D002025 2.7e-06 55.5 46 58.7
Hma1.2p1_0659F.1_g197250 Hydrangea macrophylla HOM05D000325 ORTHO05D002025 2.7e-06 55.5 64 50.0
Rhsim03G0242800 Rhododendron simsii HOM05D000325 ORTHO05D002025 2.7e-06 55.5 46 58.7
TPR.G37255 Trifolium pratense HOM05D000325 ORTHO05D002025 2.7e-06 55.5 73 42.5
vmacro20695 Vaccinium macrocarpon HOM05D000325 ORTHO05D002025 2.7e-06 55.5 53 54.7
Gorai.010G070400 Gossypium raimondii HOM05D000325 ORTHO05D002025 3.6e-06 55.1 48 58.3
Oeu028160.1 Olea europaea HOM05D000325 ORTHO05D002025 3.6e-06 55.1 45 60.0
MSTRG.6004 Avicennia marina HOM05D000325 ORTHO05D002025 4.7e-06 54.7 61 50.8
CAN.G238.1 Capsicum annuum HOM05D000325 ORTHO05D002025 4.7e-06 54.7 62 51.6
AUR62021511 Chenopodium quinoa HOM05D000325 ORTHO05D002025 4.7e-06 54.7 46 58.7
Ca_25527_v3 Cicer arietinum L. HOM05D000325 ORTHO05D002025 4.7e-06 54.7 41 61.0
Eucgr.F03020 Eucalyptus grandis HOM05D000325 ORTHO05D002025 4.7e-06 54.7 58 48.3
Lj3g0019914 Lotus japonicus HOM05D000325 ORTHO05D002025 4.7e-06 54.7 61 50.8
TPR.G24150 Trifolium pratense HOM05D000325 ORTHO05D002025 4.7e-06 54.7 58 48.3
Actinidia32683 Actinidia chinensis HOM05D000325 ORTHO05D002025 6.1e-06 54.3 46 58.7
Gohir.A05G130500 Gossypium hirsutum HOM05D000325 ORTHO05D002025 6.1e-06 54.3 61 47.5
Lalb_Chr25g0279791 Lupinus albus HOM05D000325 ORTHO05D002025 6.1e-06 54.3 71 47.9
Hund26163 Selenicereus undatus HOM05D000325 ORTHO05D002025 6.1e-06 54.3 46 58.7
TWI18G0964 Tripterygium wilfordii HOM05D000325 ORTHO05D002025 6.1e-06 54.3 58 50.0
TAR624G1097 Trochodendron aralioides HOM05D000325 ORTHO05D002025 6.1e-06 54.3 58 50.0
Atru.chr7.1345 Acer truncatum HOM05D000325 ORTHO05D002025 8.0e-06 53.9 49 51.0
CAN.G438.73 Capsicum annuum HOM05D000325 ORTHO05D002025 8.0e-06 53.9 61 50.8
COL.COLO4_30389 Corchorus olitorius HOM05D000325 ORTHO05D002025 8.0e-06 53.9 45 57.8
Duzib192G0932 Durio zibethinus HOM05D000325 ORTHO05D002025 8.0e-06 53.9 45 57.8
Lsat_1_v5_gn_4_102360 Lactuca sativa HOM05D000325 ORTHO05D002025 8.0e-06 53.9 45 55.6
Lalb_Chr14g0371481 Lupinus albus HOM05D000325 ORTHO05D002025 8.0e-06 53.9 41 61.0
Lalb_Chr24g0395851 Lupinus albus HOM05D000325 ORTHO05D002025 8.0e-06 53.9 74 44.6
Hund09199 Selenicereus undatus HOM05D000325 ORTHO05D002025 8.0e-06 53.9 45 57.8


User provided reference genes

Program Settings