Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G1672 Fragaria x ananassa HOM05D000902 ORTHO05D046577 3.1e-90 335.1 167 100.0
FAN13G1027 Fragaria x ananassa HOM05D000902 ORTHO05D046577 1.3e-85 319.7 161 99.4
FAN08G1198 Fragaria x ananassa HOM05D000902 ORTHO05D000832 5.2e-82 307.8 161 95.7
FAN18G3500 Fragaria x ananassa HOM05D000902 ORTHO05D000832 2.2e-80 302.4 172 89.5
FvH4_5g28960 Fragaria vesca HOM05D000902 ORTHO05D000832 2.9e-80 302.0 173 89.0
RcHm_v2.0_Chr5g0042471 Rosa chinensis HOM05D000902 ORTHO05D000832 3.5e-70 268.5 172 79.7
MD07G1122300 Malus domestica HOM05D000902 ORTHO05D000832 7.9e-38 161.0 187 52.4
QL10p010846 Quercus lobata HOM05D000902 ORTHO05D000832 6.3e-35 151.4 174 51.1
Prupe.6G157300 Prunus persica HOM05D000902 ORTHO05D000832 6.9e-34 147.9 175 51.4
Gorai.010G138700 Gossypium raimondii HOM05D000902 ORTHO05D000832 4.5e-33 145.2 179 48.6
Gohir.A13G086300 Gossypium hirsutum HOM05D000902 ORTHO05D000832 7.7e-33 144.4 179 48.0
Gohir.D13G091800 Gossypium hirsutum HOM05D000902 ORTHO05D000832 2.9e-32 142.5 179 46.9
Haze_07537 Corylus avellana HOM05D000902 ORTHO05D000832 3.9e-29 132.1 185 45.9
Cfa019164 Carpinus fangiana HOM05D000902 ORTHO05D000832 1.5e-28 130.2 185 45.4
CiPaw.11G023700 Carya illinoinensis HOM05D000902 ORTHO05D000832 2.0e-28 129.8 177 49.2
Atru.chr9.2515 Acer truncatum HOM05D000902 ORTHO05D000832 8.2e-27 124.4 200 41.5
Haze_07539 Corylus avellana HOM05D000902 ORTHO05D000832 8.2e-27 124.4 187 46.0
Thecc.03G015800 Theobroma cacao HOM05D000902 ORTHO05D000832 1.1e-26 124.0 183 46.4
Dinv38565 Davidia involucrata HOM05D000902 ORTHO05D000832 1.4e-26 123.6 202 41.6
Dinv20631 Davidia involucrata HOM05D000902 ORTHO05D000832 3.1e-26 122.5 201 39.8
Cpa.g.sc1163.1 Carica papaya HOM05D000902 ORTHO05D000832 5.3e-26 121.7 197 41.1
Duzib068G0200 Durio zibethinus HOM05D000902 ORTHO05D000832 1.2e-25 120.6 173 48.0
GSVIVG01007708001 Vitis vinifera HOM05D000902 ORTHO05D000832 1.5e-25 120.2 201 39.8
CSS0022409 Camellia sinensis var. sinensis HOM05D000902 ORTHO05D000832 7.7e-25 117.9 187 41.7
Actinidia19334 Actinidia chinensis HOM05D000902 ORTHO05D000832 2.9e-24 115.9 184 40.2
Manes.11G096200 Manihot esculenta HOM05D000902 ORTHO05D000832 6.5e-24 114.8 179 40.8
CANSAT80G0070 Cannabis sativa HOM05D000902 ORTHO05D000832 3.2e-23 112.5 163 41.7
Hma1.2p1_0592F.1_g185510 Hydrangea macrophylla HOM05D000902 ORTHO05D000832 4.2e-23 112.1 205 37.6
Potri.012G089000 Populus trichocarpa HOM05D000902 ORTHO05D000832 4.2e-23 112.1 196 37.8
MSTRG.23142 Avicennia marina HOM05D000902 ORTHO05D000832 5.5e-23 111.7 201 40.3
Rhsim08G0174400 Rhododendron simsii HOM05D000902 ORTHO05D000832 2.1e-22 109.8 174 41.4
Ciclev10019081m.g Citrus clementina HOM05D000902 ORTHO05D000832 4.7e-22 108.6 198 39.9
Migut.N02096 Erythranthe guttata HOM05D000902 ORTHO05D000832 4.7e-22 108.6 201 41.8
Sc10g0010130 Simmondsia chinensis HOM05D000902 ORTHO05D000832 1.0e-21 107.5 193 39.4
TWI39G0850 Tripterygium wilfordii HOM05D000902 ORTHO05D000832 2.3e-21 106.3 183 41.0
TWI14G0070 Tripterygium wilfordii HOM05D000902 ORTHO05D000832 3.9e-21 105.5 180 40.6
vmacro19408 Vaccinium macrocarpon HOM05D000902 ORTHO05D000832 6.7e-21 104.8 198 37.4
Sabra12G0064100 Salix brachista HOM05D000902 ORTHO05D000832 1.1e-20 104.0 188 38.3
AUR62008188 Chenopodium quinoa HOM05D000902 ORTHO05D000832 2.6e-20 102.8 194 37.1
COL.COLO4_30094 Corchorus olitorius HOM05D000902 ORTHO05D000832 9.7e-20 100.9 177 40.1
Nitab4.5_0000137g0020 Nicotiana tabacum HOM05D000902 ORTHO05D000832 4.8e-19 98.6 211 35.5
Potri.015G079400 Populus trichocarpa HOM05D000902 ORTHO05D000832 6.3e-19 98.2 153 40.5
HanXRQChr09g0272081 Helianthus annuus HOM05D000902 ORTHO05D000832 1.4e-18 97.1 187 40.6
SalBow5G2667 Salvia bowleyana HOM05D000902 ORTHO05D000832 1.4e-18 97.1 177 39.0
CSS0015512 Camellia sinensis var. sinensis HOM05D000902 ORTHO05D000832 5.3e-18 95.1 185 39.5
Oeu016415.1 Olea europaea HOM05D000902 ORTHO05D000832 5.3e-18 95.1 171 40.4
Nitab4.5_0000003g0730 Nicotiana tabacum HOM05D000902 ORTHO05D000832 7.0e-18 94.7 174 39.1
CANSAT80G0483 Cannabis sativa HOM05D000902 ORTHO05D000832 9.1e-18 94.4 166 41.0
Nitab4.5_0002686g0030 Nicotiana tabacum HOM05D000902 ORTHO05D000832 9.1e-18 94.4 174 38.5
Solyc01g099300.3 Solanum lycopersicum HOM05D000902 ORTHO05D000832 9.1e-18 94.4 220 35.5
Hma1.2p1_0046F.1_g026710 Hydrangea macrophylla HOM05D000902 ORTHO05D000832 1.2e-17 94.0 209 35.9
Sopen01g042850 Solanum pennellii HOM05D000902 ORTHO05D000832 1.2e-17 94.0 220 35.5
Hma1.2p1_0592F.1_g185530 Hydrangea macrophylla HOM05D000902 ORTHO05D000832 2.6e-17 92.8 176 38.1
Lsat_1_v5_gn_4_75761 Lactuca sativa HOM05D000902 ORTHO05D000832 3.5e-17 92.4 187 36.9
Sed0019010 Sechium edule HOM05D000902 ORTHO05D000832 3.5e-17 92.4 168 39.3
TAR622G0638 Trochodendron aralioides HOM05D000902 ORTHO05D000832 3.5e-17 92.4 206 34.5
Eucgr.B00251 Eucalyptus grandis HOM05D000902 ORTHO05D000832 1.0e-16 90.9 167 37.7
Peaxi162Scf00037g00714 Petunia axillaris HOM05D000902 ORTHO05D000832 1.0e-16 90.9 205 33.7
PSO832G3489 Papaver somniferum HOM05D000902 ORTHO05D000832 1.7e-16 90.1 196 35.2
Nn3g16786 Nelumbo nucifera HOM05D000902 ORTHO05D000832 2.2e-16 89.7 202 35.6
PSO063G4558 Papaver somniferum HOM05D000902 ORTHO05D000832 2.2e-16 89.7 196 35.2
Nitab4.5_0003156g0020 Nicotiana tabacum HOM05D000902 ORTHO05D000832 2.9e-16 89.4 211 35.5
Sed0020188 Sechium edule HOM05D000902 ORTHO05D000832 3.8e-16 89.0 158 34.8
Lalb_Chr11g0070461 Lupinus albus HOM05D000902 ORTHO05D000832 5.0e-16 88.6 169 37.9
VMungo1309G0421 Vigna mungo HOM05D000902 ORTHO05D000832 5.0e-16 88.6 181 34.8
AUR62008187 Chenopodium quinoa HOM05D000902 ORTHO05D000832 8.5e-16 87.8 188 36.2
Lj1g0002823 Lotus japonicus HOM05D000902 ORTHO05D000832 1.1e-15 87.4 178 36.0
MELO3C026286.2 Cucumis melo HOM05D000902 ORTHO05D000832 1.5e-15 87.0 177 35.6
ECA232G3336 Erigeron canadensis HOM05D000902 ORTHO05D000832 2.5e-15 86.3 181 34.3
Aqoxy3G02853 Aquilegia oxysepala HOM05D000902 ORTHO05D000832 3.2e-15 85.9 198 34.3
Lj9A446G59 Lonicera japonica HOM05D000902 ORTHO05D000832 3.2e-15 85.9 155 37.4
PGR083G1360 Punica granatum HOM05D000902 ORTHO05D000832 3.2e-15 85.9 157 36.3
SGA_v2.0_scaffold34G13808 Striga asiatica HOM05D000902 ORTHO05D000832 5.5e-15 85.1 168 35.7
TAR629G1079 Trochodendron aralioides HOM05D000902 ORTHO05D000832 5.5e-15 85.1 203 35.5
Ah.02g110620 Amaranthus hybridus HOM05D000902 ORTHO05D000832 7.2e-15 84.7 192 36.5
THA.LOC104808315 Tarenaya hassleriana HOM05D000902 ORTHO05D000832 7.2e-15 84.7 181 32.6
THA.LOC104809238 Tarenaya hassleriana HOM05D000902 ORTHO05D000832 7.2e-15 84.7 186 33.3
ECA247G1932 Erigeron canadensis HOM05D000902 ORTHO05D000832 1.2e-14 84.0 182 35.2
AUR62028767 Chenopodium quinoa HOM05D000902 ORTHO05D000832 1.6e-14 83.6 188 34.6
Cc04_g12280 Coffea canephora HOM05D000902 ORTHO05D000832 2.1e-14 83.2 182 37.4
TPR.G29396 Trifolium pratense HOM05D000902 ORTHO05D000832 2.1e-14 83.2 167 37.7
HanXRQChr02g0035991 Helianthus annuus HOM05D000902 ORTHO05D000832 3.6e-14 82.4 170 40.6
Glyma.04G185300 Glycine max HOM05D000902 ORTHO05D000832 4.7e-14 82.0 174 35.1
Medtr3g077540 Medicago truncatula HOM05D000902 ORTHO05D000832 4.7e-14 82.0 159 39.0
Solyc06g071580.3 Solanum lycopersicum HOM05D000902 ORTHO05D000832 4.7e-14 82.0 174 33.9
Sopen06g027870 Solanum pennellii HOM05D000902 ORTHO05D000832 4.7e-14 82.0 174 33.9
Dinv33466 Davidia involucrata HOM05D000902 ORTHO05D000832 6.1e-14 81.6 207 33.3
Rhsim08G0052000 Rhododendron simsii HOM05D000902 ORTHO05D000832 8.0e-14 81.3 193 35.8
SGA_v2.0_scaffold90G27888 Striga asiatica HOM05D000902 ORTHO05D000832 1.0e-13 80.9 206 31.6
Nitab4.5_0003918g0010 Nicotiana tabacum HOM05D000902 ORTHO05D000832 1.8e-13 80.1 161 36.0
ECA247G3338 Erigeron canadensis HOM05D000902 ORTHO05D000832 3.0e-13 79.3 185 33.5
ECA247G4115 Erigeron canadensis HOM05D000902 ORTHO05D000832 5.2e-13 78.6 182 33.0
GSVIVG01032432001 Vitis vinifera HOM05D000902 ORTHO05D000832 6.7e-13 78.2 197 32.5
Phvul.009G176500 Phaseolus vulgaris HOM05D000902 ORTHO05D000832 2.6e-12 76.3 187 34.8
Sp1g17020 Schrenkiella parvula HOM05D002029 ORTHO05D002158 3.3e-12 75.9 195 32.8
Ca_16158_v3 Cicer arietinum L. HOM05D000902 ORTHO05D000832 5.7e-12 75.1 168 34.5
Actinidia35762 Actinidia chinensis HOM05D000902 ORTHO05D000832 7.5e-12 74.7 206 31.1
HanXRQChr15g0463011 Helianthus annuus HOM05D000902 ORTHO05D000832 9.7e-12 74.3 193 33.7
BcaB03g14466 Brassica carinata HOM05D000902 ORTHO05D000832 1.3e-11 73.9 188 33.0
Carub.0001s1872 Capsella rubella HOM05D000902 ORTHO05D000832 1.3e-11 73.9 180 31.7
Lj4g0005516 Lotus japonicus HOM05D000902 ORTHO05D000832 1.7e-11 73.6 167 35.3
BraA09t41330Z Brassica rapa HOM05D000902 ORTHO05D000832 4.8e-11 72.0 189 33.3
CAN.G993.39 Capsicum annuum HOM05D000902 ORTHO05D000832 4.8e-11 72.0 176 33.5
Glyma.17G087900 Glycine max HOM05D000902 ORTHO05D000832 8.2e-11 71.2 154 31.8
C05p17470 Brassica napus HOM05D000902 ORTHO05D000832 1.8e-10 70.1 192 31.2
BolC5t30451H Brassica oleracea HOM05D000902 ORTHO05D000832 1.8e-10 70.1 192 31.2
Aa31LG7G3830 Aethionema arabicum HOM05D000902 ORTHO05D000832 5.3e-10 68.6 204 28.4
Lsat_1_v5_gn_1_28281 Lactuca sativa HOM05D000902 ORTHO05D000832 5.3e-10 68.6 225 27.1
HPP92_009708 Vanilla planifolia HOM05D000902 ORTHO05D000832 1.2e-09 67.4 179 29.6
Thhalv10006991m.g Eutrema salsugineum HOM05D000902 ORTHO05D000832 3.5e-09 65.9 192 31.2
Medtr4g105530 Medicago truncatula HOM05D000902 ORTHO05D000832 4.5e-09 65.5 157 31.8
Peaxi162Scf00689g00123 Petunia axillaris HOM05D000902 ORTHO05D000832 4.5e-09 65.5 148 31.8
Psat4g058520 Pisum sativum HOM05D000902 ORTHO05D000832 5.9e-09 65.1 159 31.4
BcaC05g25810 Brassica carinata HOM05D002029 ORTHO05D002158 1.0e-08 64.3 182 31.3
TPR.G37523 Trifolium pratense HOM05D000902 ORTHO05D000832 1.0e-08 64.3 144 33.3
HanXRQChr02g0035981 Helianthus annuus HOM05D000902 ORTHO05D000832 1.3e-08 63.9 157 33.8
QL02p075247 Quercus lobata HOM05D000902 ORTHO05D000832 1.3e-08 63.9 177 32.2
EL10Ac5g10723 Beta vulgaris HOM05D000902 ORTHO05D000832 5.0e-08 62.0 61 59.0
CDE06G0536 Ceratophyllum demersum HOM05D000902 ORTHO05D000832 5.0e-08 62.0 176 33.0
AUR62028768 Chenopodium quinoa HOM05D000902 ORTHO05D000832 5.0e-08 62.0 70 50.0
CAN.G1034.55 Capsicum annuum HOM05D000902 ORTHO05D000832 8.5e-08 61.2 79 46.8
Eucgr.B00250 Eucalyptus grandis HOM05D000902 ORTHO05D000832 8.5e-08 61.2 161 28.6
CARHR019690 Cardamine hirsuta HOM05D000902 ORTHO05D000832 4.2e-07 58.9 161 29.8
Ca_21936_v3 Cicer arietinum L. HOM05D000902 ORTHO05D000832 9.4e-07 57.8 165 32.7
ClCG06G017100 Citrullus lanatus HOM05D000902 ORTHO05D000832 9.4e-07 57.8 74 45.9
AL1G31670 Arabidopsis lyrata HOM05D000902 ORTHO05D000832 1.6e-06 57.0 175 29.7
Lsat_1_v5_gn_1_28261 Lactuca sativa HOM05D000902 ORTHO05D000832 1.6e-06 57.0 194 30.9
EL10Ac5g10722 Beta vulgaris HOM05D000902 ORTHO05D000832 3.6e-06 55.8 67 47.8
COL.COLO4_29061 Corchorus olitorius HOM05D000902 ORTHO05D000832 3.6e-06 55.8 155 29.7
AT1G19100 Arabidopsis thaliana HOM05D000902 ORTHO05D000832 4.7e-06 55.5 175 29.7
DCAR_026157 Daucus carota HOM05D000902 ORTHO05D000832 6.1e-06 55.1 68 48.5
unitig_52.g17485 Utricularia gibba HOM05D000902 ORTHO05D000191 6.1e-06 55.1 139 32.4
ECA247G0781 Erigeron canadensis HOM05D000902 ORTHO05D000832 8.0e-06 54.7 217 26.3


User provided reference genes

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