Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G1670 Fragaria x ananassa HOM05D006310 ORTHO05D007768 6.8e-83 311.2 241 100.0
FAN18G3281 Fragaria x ananassa HOM05D006310 ORTHO05D007768 2.5e-77 292.7 241 96.7
FAN08G3522 Fragaria x ananassa HOM05D006310 ORTHO05D007768 7.3e-77 291.2 241 96.3
FAN18G0493 Fragaria x ananassa HOM05D006310 ORTHO05D007768 6.8e-75 284.6 241 95.9
FvH4_5g22450 Fragaria vesca HOM05D006310 ORTHO05D007768 6.6e-70 268.1 150 94.7
RcHm_v2.0_Chr7g0210241 Rosa chinensis HOM05D006310 ORTHO05D007768 3.8e-41 172.6 248 72.2
MD06G1036900 Malus domestica HOM05D006310 ORTHO05D007768 2.7e-31 139.8 157 58.6
Prupe.5G032400 Prunus persica HOM05D006310 ORTHO05D007768 9.1e-27 124.8 154 53.2
Haze_08202 Corylus avellana HOM05D006310 ORTHO05D007768 5.5e-24 115.5 189 43.4
QL12p004739 Quercus lobata HOM05D006310 ORTHO05D007768 5.5e-24 115.5 192 42.7
CANSAT21G0851 Cannabis sativa HOM05D006310 ORTHO05D007768 6.7e-22 108.6 185 38.9
Cfa012467 Carpinus fangiana HOM05D006310 ORTHO05D007768 1.5e-21 107.5 188 41.5
Hma1.2p1_1379F.1_g279220 Hydrangea macrophylla HOM05D006310 ORTHO05D007768 3.3e-21 106.3 170 44.1
CiPaw.12G065800 Carya illinoinensis HOM05D006310 ORTHO05D007768 8.2e-20 101.7 201 40.8
Gohir.A08G155500 Gossypium hirsutum HOM05D006310 ORTHO05D007768 1.8e-19 100.5 187 39.0
Gorai.004G183900 Gossypium raimondii HOM05D006310 ORTHO05D007768 1.8e-19 100.5 186 38.7
Gohir.D08G176100 Gossypium hirsutum HOM05D006310 ORTHO05D007768 4.1e-19 99.4 186 38.7
Thecc.03G224800 Theobroma cacao HOM05D006310 ORTHO05D007768 4.1e-19 99.4 200 38.0
Actinidia03362 Actinidia chinensis HOM05D006310 ORTHO05D007768 5.3e-19 99.0 159 42.8
Dinv25232 Davidia involucrata HOM05D006310 ORTHO05D007768 4.5e-18 95.9 215 37.2
Duzib084G0468 Durio zibethinus HOM05D006310 ORTHO05D007768 1.0e-17 94.7 200 36.5
CSS0006923 Camellia sinensis var. sinensis HOM05D006310 ORTHO05D007768 1.3e-17 94.4 199 37.2
CiPaw.11G095600 Carya illinoinensis HOM05D006310 ORTHO05D007768 1.3e-17 94.4 171 43.3
CSS0048597 Camellia sinensis var. sinensis HOM05D006310 ORTHO05D007768 1.7e-17 94.0 200 37.0
ClCG09G011810 Citrullus lanatus HOM05D006310 ORTHO05D007768 1.7e-17 94.0 176 41.5
Duzib205G0324 Durio zibethinus HOM05D006310 ORTHO05D007768 3.2e-16 89.7 200 36.0
Hma1.2p1_0303F.1_g118950 Hydrangea macrophylla HOM05D006310 ORTHO05D007768 7.2e-16 88.6 196 38.3
arahy.Tifrunner.gnm1.ann1.P6RCLW Arachis hypogaea HOM05D006310 ORTHO05D007768 2.7e-15 86.7 168 42.9
arahy.Tifrunner.gnm1.ann1.U64MAA Arachis hypogaea HOM05D006310 ORTHO05D007768 2.7e-15 86.7 168 42.9
COL.COLO4_16996 Corchorus olitorius HOM05D006310 ORTHO05D007768 3.6e-15 86.3 202 35.6
PSO782G4606 Papaver somniferum HOM05D006310 ORTHO05D007768 3.6e-15 86.3 204 35.8
Actinidia25977 Actinidia chinensis HOM05D006310 ORTHO05D007768 6.1e-15 85.5 181 38.1
Potri.001G140500 Populus trichocarpa HOM05D006310 ORTHO05D007768 6.1e-15 85.5 188 36.2
Sabra01G0109300 Salix brachista HOM05D006310 ORTHO05D007768 8.0e-15 85.1 188 36.2
Ca_25198_v3 Cicer arietinum L. HOM05D006310 ORTHO05D007768 1.4e-14 84.3 161 42.2
PGR031G3884 Punica granatum HOM05D006310 ORTHO05D007768 1.4e-14 84.3 195 36.9
Psat2g137200 Pisum sativum HOM05D006310 ORTHO05D007768 2.3e-14 83.6 161 43.5
Oeu006245.1 Olea europaea HOM05D006310 ORTHO05D007768 3.0e-14 83.2 178 36.5
Manes.15G192960 Manihot esculenta HOM05D006310 ORTHO05D007768 5.2e-14 82.4 190 36.3
Gohir.A11G031400 Gossypium hirsutum HOM05D006310 ORTHO05D007768 6.7e-14 82.0 201 33.8
PSO063G6445 Papaver somniferum HOM05D006310 ORTHO05D007768 8.8e-14 81.6 203 35.0
GSVIVG01013133001 Vitis vinifera HOM05D006310 ORTHO05D007768 1.2e-13 81.3 97 50.5
Gorai.007G033000 Gossypium raimondii HOM05D006310 ORTHO05D007768 1.5e-13 80.9 202 33.7
Gohir.D11G030100 Gossypium hirsutum HOM05D006310 ORTHO05D007768 3.3e-13 79.7 202 34.7
Glyma.01G017000 Glycine max HOM05D006310 ORTHO05D007768 4.4e-13 79.3 169 40.2
Dinv28973 Davidia involucrata HOM05D006310 ORTHO05D007768 5.7e-13 79.0 84 51.2
Lj2g0018875 Lotus japonicus HOM05D006310 ORTHO05D007768 7.5e-13 78.6 184 37.5
vmacro00314 Vaccinium macrocarpon HOM05D006310 ORTHO05D007768 7.5e-13 78.6 187 36.4
Actinidia14793 Actinidia chinensis HOM05D006310 ORTHO05D007768 1.7e-12 77.4 201 32.8
Eucgr.D02211 Eucalyptus grandis HOM05D006310 ORTHO05D007768 2.2e-12 77.0 208 33.7
Nitab4.5_0000127g0100 Nicotiana tabacum HOM05D006310 ORTHO05D007768 2.8e-12 76.6 214 31.3
Nitab4.5_0003625g0020 Nicotiana tabacum HOM05D006310 ORTHO05D007768 2.8e-12 76.6 214 30.8
Medtr5g029910 Medicago truncatula HOM05D006310 ORTHO05D007768 3.7e-12 76.3 160 38.1
TWI15G1132 Tripterygium wilfordii HOM05D006310 ORTHO05D007768 3.7e-12 76.3 205 32.7
Sed0010075 Sechium edule HOM05D006310 ORTHO05D007768 4.8e-12 75.9 190 36.8
THA.LOC104827750 Tarenaya hassleriana HOM05D006310 ORTHO05D007768 8.2e-12 75.1 186 32.8
Lj2A236G56 Lonicera japonica HOM05D006310 ORTHO05D007768 1.1e-11 74.7 206 35.0
Lalb_Chr05g0215911 Lupinus albus HOM05D006310 ORTHO05D007768 1.1e-11 74.7 184 38.0
VMungo1080G0874 Vigna mungo HOM05D006310 ORTHO05D007768 3.1e-11 73.2 70 58.6
Atru.chr6.1649 Acer truncatum HOM05D006310 ORTHO05D007768 4.1e-11 72.8 193 33.7
BcaNung00042 Brassica carinata HOM05D006310 ORTHO05D007768 4.1e-11 72.8 100 46.0
Glyma.09G205800 Glycine max HOM05D006310 ORTHO05D007768 5.3e-11 72.4 169 34.9
CAN.G298.28 Capsicum annuum HOM05D006310 ORTHO05D007768 7.0e-11 72.0 198 36.9
MSTRG.13750 Avicennia marina HOM05D006310 ORTHO05D007768 1.6e-10 70.9 181 34.3
CsaV3_3G049010 Cucumis sativus L. HOM05D006310 ORTHO05D007768 1.6e-10 70.9 176 39.2
Rhsim11G0017700 Rhododendron simsii HOM05D006310 ORTHO05D007768 2.0e-10 70.5 154 37.0
Actinidia09184 Actinidia chinensis HOM05D006310 ORTHO05D007768 4.5e-10 69.3 181 33.1
Nn3g19447 Nelumbo nucifera HOM05D006310 ORTHO05D007768 4.5e-10 69.3 201 33.3
VMungo1215G2715 Vigna mungo HOM05D006310 ORTHO05D007768 7.7e-10 68.6 180 38.3
HanXRQChr06g0167641 Helianthus annuus HOM05D006310 ORTHO05D007768 1.3e-09 67.8 75 53.3
Phvul.002G140000 Phaseolus vulgaris HOM05D006310 ORTHO05D007768 1.7e-09 67.4 178 38.8
Lsat_1_v5_gn_3_18800 Lactuca sativa HOM05D006310 ORTHO05D007768 2.2e-09 67.0 76 47.4
TAR629G1434 Trochodendron aralioides HOM05D006310 ORTHO05D007768 2.2e-09 67.0 52 61.5
Solyc08g076730.4 Solanum lycopersicum HOM05D006310 ORTHO05D007768 3.8e-09 66.2 74 45.9
CARHR224680 Cardamine hirsuta HOM05D006310 ORTHO05D007768 5.0e-09 65.9 187 34.2
Sopen08g025280 Solanum pennellii HOM05D006310 ORTHO05D007768 5.0e-09 65.9 74 45.9
THA.LOC104806719 Tarenaya hassleriana HOM05D006310 ORTHO05D007768 5.0e-09 65.9 170 32.9
A01p09980 Brassica napus HOM05D006310 ORTHO05D007768 6.5e-09 65.5 154 35.7
DCAR_008251 Daucus carota HOM05D006310 ORTHO05D007768 6.5e-09 65.5 75 53.3
ECA246G3187 Erigeron canadensis HOM05D006310 ORTHO05D007768 6.5e-09 65.5 47 61.7
Cpa.g.sc90.63 Carica papaya HOM05D006310 ORTHO05D007768 8.5e-09 65.1 203 33.0
PGSC0003DMG400017523 Solanum tuberosum HOM05D006310 ORTHO05D007768 8.5e-09 65.1 74 45.9
MELO3C003424.2 Cucumis melo HOM05D006310 ORTHO05D007768 1.5e-08 64.3 163 40.5
BraA08t33321Z Brassica rapa HOM05D006310 ORTHO05D007768 1.9e-08 63.9 72 50.0
Migut.E00791 Erythranthe guttata HOM05D006310 ORTHO05D007768 1.9e-08 63.9 178 34.3
Cc08_g03010 Coffea canephora HOM05D006310 ORTHO05D007768 2.5e-08 63.5 178 32.6
Carub.0007s2340 Capsella rubella HOM05D006310 ORTHO05D007768 3.2e-08 63.2 164 31.1
BraA01t00942Z Brassica rapa HOM05D006310 ORTHO05D007768 4.2e-08 62.8 156 34.0
AT4G17940 Arabidopsis thaliana HOM05D006310 ORTHO05D007768 7.2e-08 62.0 192 31.8
BcaC09g51583 Brassica carinata HOM05D006310 ORTHO05D007768 7.2e-08 62.0 103 39.8
CDE02G1298 Ceratophyllum demersum HOM05D006310 ORTHO05D007768 7.2e-08 62.0 42 64.3
A08p13440 Brassica napus HOM05D006310 ORTHO05D007768 9.4e-08 61.6 72 48.6
C01p11780 Brassica napus HOM05D006310 ORTHO05D007768 9.4e-08 61.6 101 40.6
BolC1t01140H Brassica oleracea HOM05D006310 ORTHO05D007768 9.4e-08 61.6 103 39.8
BolC8t48532H Brassica oleracea HOM05D006310 ORTHO05D007768 9.4e-08 61.6 72 50.0
HanXRQChr17g0536151 Helianthus annuus HOM05D006310 ORTHO05D007768 9.4e-08 61.6 65 47.7
MBI04_g20344_MAGBIO Magnolia biondii HOM05D006310 ORTHO05D007768 9.4e-08 61.6 38 76.3
ATR0665G126 Amborella trichopoda HOM05D006310 ORTHO05D007768 1.2e-07 61.2 53 52.8
Hund14348 Selenicereus undatus HOM05D006310 ORTHO05D007768 1.2e-07 61.2 55 54.5
Aa31LG6G690 Aethionema arabicum HOM05D006310 ORTHO05D007768 2.7e-07 60.1 187 30.5
AL7G36570 Arabidopsis lyrata HOM05D006310 ORTHO05D007768 3.6e-07 59.7 190 30.5
Sp7g16170 Schrenkiella parvula HOM05D006310 ORTHO05D007768 4.7e-07 59.3 75 44.0
BcaB04g18451 Brassica carinata HOM05D006310 ORTHO05D007768 6.1e-07 58.9 71 47.9
FAN14G4553 Fragaria x ananassa HOM05D062194 ORTHO05D045419 6.1e-07 58.9 91 49.5
EL10Ac5g12081 Beta vulgaris HOM05D006310 ORTHO05D007768 8.0e-07 58.5 171 32.7
Thhalv10026016m.g Eutrema salsugineum HOM05D006310 ORTHO05D007768 8.0e-07 58.5 187 28.9
CDE06G1171 Ceratophyllum demersum HOM05D006310 ORTHO05D007768 1.8e-06 57.4 188 29.8
HPP92_014659 Vanilla planifolia HOM05D006310 ORTHO05D007768 1.8e-06 57.4 121 31.4
FvH4_6g30360 Fragaria vesca HOM05D062194 ORTHO05D045419 3.0e-06 56.6 55 69.1
Ah.07g200600 Amaranthus hybridus HOM05D006310 ORTHO05D007768 6.8e-06 55.5 167 31.1


User provided reference genes

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