Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G1660 Fragaria x ananassa HOM05D003774 ORTHO05D009174 2.0e-71 272.3 134 100.0
FAN22G1282 Fragaria x ananassa HOM05D003774 ORTHO05D009174 2.2e-67 258.8 134 95.5
FAN18G3876 Fragaria x ananassa HOM05D003402 ORTHO05D003939 8.5e-67 256.9 134 94.0
FvH4_5g31620 Fragaria vesca HOM05D003774 ORTHO05D009174 4.2e-66 254.6 134 93.3
RcHm_v2.0_Chr7g0227151 Rosa chinensis HOM05D003774 ORTHO05D009174 6.3e-62 240.7 134 91.0
Prupe.1G555600 Prunus persica HOM05D003774 ORTHO05D009174 1.9e-58 229.2 132 84.8
MD08G1217800 Malus domestica HOM05D003774 ORTHO05D009174 3.1e-53 211.8 131 78.6
QL02p014374 Quercus lobata HOM05D003774 ORTHO05D009174 5.9e-52 207.6 129 77.5
Manes.02G198600 Manihot esculenta HOM05D003774 ORTHO05D009174 7.7e-52 207.2 129 75.2
Rhsim11G0052900 Rhododendron simsii HOM05D003774 ORTHO05D009174 5.0e-51 204.5 132 72.0
TAR624G0812 Trochodendron aralioides HOM05D003774 ORTHO05D009174 6.5e-51 204.1 129 72.1
Sabra13G0091200 Salix brachista HOM05D003774 ORTHO05D009174 1.9e-50 202.6 129 74.4
Ciclev10001943m.g Citrus clementina HOM05D003774 ORTHO05D009174 4.2e-50 201.4 129 73.6
GSVIVG01026084001 Vitis vinifera HOM05D003774 ORTHO05D009174 5.5e-50 201.1 128 71.1
Potri.019G079000 Populus trichocarpa HOM05D003774 ORTHO05D009174 7.2e-50 200.7 129 72.9
Cfa012969 Carpinus fangiana HOM05D003774 ORTHO05D009174 1.2e-49 199.9 129 72.9
DCAR_003529 Daucus carota HOM05D003774 ORTHO05D009174 1.2e-49 199.9 129 72.9
Thecc.08G192500 Theobroma cacao HOM05D003774 ORTHO05D009174 2.7e-49 198.7 132 72.0
CANSAT25G3020 Cannabis sativa HOM05D003774 ORTHO05D009174 6.1e-49 197.6 129 71.3
Atru.chr13.2367 Acer truncatum HOM05D003774 ORTHO05D009174 8.0e-49 197.2 129 73.6
Actinidia29410 Actinidia chinensis HOM05D003774 ORTHO05D009174 8.0e-49 197.2 130 73.1
Cpa.g.sc66.2 Carica papaya HOM05D003774 ORTHO05D009174 8.0e-49 197.2 129 69.8
Haze_21313 Corylus avellana HOM05D003774 ORTHO05D009174 4.0e-48 194.9 129 71.3
Lj3g0005610 Lotus japonicus HOM05D003774 ORTHO05D009174 1.5e-47 193.0 129 69.0
PSO017G5271 Papaver somniferum HOM05D003774 ORTHO05D009174 2.6e-47 192.2 134 64.9
PSO170G6059 Papaver somniferum HOM05D003774 ORTHO05D009174 2.6e-47 192.2 134 64.9
PGR042G3286 Punica granatum HOM05D003774 ORTHO05D009174 4.4e-47 191.4 129 71.3
TWI59G1355 Tripterygium wilfordii HOM05D003774 ORTHO05D009174 7.5e-47 190.7 130 68.5
ClCG08G000170 Citrullus lanatus HOM05D003774 ORTHO05D009174 1.3e-46 189.9 130 67.7
Eucgr.F02990 Eucalyptus grandis HOM05D003774 ORTHO05D009174 1.3e-46 189.9 130 70.0
Gohir.A13G119000 Gossypium hirsutum HOM05D003774 ORTHO05D009174 2.8e-46 188.7 129 70.5
Glyma.06G325100 Glycine max HOM05D003774 ORTHO05D009174 3.7e-46 188.3 129 69.0
CiPaw.07G235700 Carya illinoinensis HOM05D003774 ORTHO05D009174 8.3e-46 187.2 129 69.8
COL.COLO4_24651 Corchorus olitorius HOM05D003774 ORTHO05D009174 3.1e-45 185.3 129 68.2
CsaV3_5G040550 Cucumis sativus L. HOM05D003774 ORTHO05D009174 5.4e-45 184.5 131 64.1
Nitab4.5_0001463g0050 Nicotiana tabacum HOM05D003774 ORTHO05D009174 9.1e-45 183.7 130 66.2
Lsat_1_v5_gn_1_25820 Lactuca sativa HOM05D003774 ORTHO05D009174 1.6e-44 183.0 129 66.7
PGSC0003DMG401025647 Solanum tuberosum HOM05D003774 ORTHO05D009174 2.7e-44 182.2 130 64.6
PGSC0003DMG402025647 Solanum tuberosum HOM05D003774 ORTHO05D009174 2.7e-44 182.2 130 64.6
MELO3C022228.2 Cucumis melo HOM05D003774 ORTHO05D009174 3.5e-44 181.8 130 63.8
Gohir.D13G122800 Gossypium hirsutum HOM05D003774 ORTHO05D009174 3.5e-44 181.8 129 69.0
Gorai.013G137800 Gossypium raimondii HOM05D003774 ORTHO05D009174 3.5e-44 181.8 129 69.0
Nitab4.5_0005616g0010 Nicotiana tabacum HOM05D003774 ORTHO05D009174 4.5e-44 181.4 130 64.6
Psat1g003280 Pisum sativum HOM05D003774 ORTHO05D009174 4.5e-44 181.4 129 65.1
ECA247G3883 Erigeron canadensis HOM05D003774 ORTHO05D009174 7.7e-44 180.6 129 65.9
Aqoxy5G02648 Aquilegia oxysepala HOM05D003774 ORTHO05D009174 1.3e-43 179.9 129 64.3
TPR.G25492 Trifolium pratense HOM05D003774 ORTHO05D009174 1.7e-43 179.5 129 61.2
MBI09_g10676_MAGBIO Magnolia biondii HOM05D003774 ORTHO05D009174 3.8e-43 178.3 129 63.6
Cc10_g09600 Coffea canephora HOM05D003774 ORTHO05D009174 5.0e-43 177.9 132 64.4
Medtr3g005060 Medicago truncatula HOM05D003774 ORTHO05D009174 5.0e-43 177.9 129 62.0
Oeu013896.2 Olea europaea HOM05D003774 ORTHO05D009174 5.0e-43 177.9 129 63.6
Phvul.005G000200 Phaseolus vulgaris HOM05D003774 ORTHO05D009174 5.0e-43 177.9 129 64.3
VMungo1080G0925 Vigna mungo HOM05D003774 ORTHO05D009174 5.0e-43 177.9 129 65.1
THA.LOC104816521 Tarenaya hassleriana HOM05D003774 ORTHO05D009174 6.6e-43 177.6 131 61.8
Aa31LG6G8720 Aethionema arabicum HOM05D003774 ORTHO05D009174 8.6e-43 177.2 129 64.3
CARHR034180 Cardamine hirsuta HOM05D003774 ORTHO05D009174 8.6e-43 177.2 129 64.3
Migut.N03372 Erythranthe guttata HOM05D003774 ORTHO05D009174 1.5e-42 176.4 132 62.9
SGA_v2.0_scaffold25G11034 Striga asiatica HOM05D003774 ORTHO05D009174 1.5e-42 176.4 130 63.1
Carub.0001s3302 Capsella rubella HOM05D003774 ORTHO05D009174 1.9e-42 176.0 129 62.0
Sp1g30140 Schrenkiella parvula HOM05D003774 ORTHO05D009174 2.5e-42 175.6 129 62.8
Nn1g08406 Nelumbo nucifera HOM05D003774 ORTHO05D009174 3.3e-42 175.3 129 62.0
Sopen11g022610 Solanum pennellii HOM05D003774 ORTHO05D009174 4.2e-42 174.9 130 60.0
AT1G35420 Arabidopsis thaliana HOM05D003774 ORTHO05D009174 5.6e-42 174.5 129 62.0
MSTRG.22470 Avicennia marina HOM05D003774 ORTHO05D009174 5.6e-42 174.5 129 64.3
BcaB07g33408 Brassica carinata HOM05D003774 ORTHO05D009174 5.6e-42 174.5 129 60.5
HanXRQChr02g0036581 Helianthus annuus HOM05D003774 ORTHO05D009174 7.2e-42 174.1 129 65.1
EL10Ac1g00136 Beta vulgaris HOM05D003774 ORTHO05D009174 3.6e-41 171.8 129 62.0
Thhalv10001825m.g Eutrema salsugineum HOM05D003774 ORTHO05D009174 8.0e-41 170.6 130 63.1
AL1G50230 Arabidopsis lyrata HOM05D003774 ORTHO05D009174 1.4e-40 169.9 129 60.5
AUR62004600 Chenopodium quinoa HOM05D003774 ORTHO05D009174 1.4e-40 169.9 129 60.5
BcaNung06721 Brassica carinata HOM05D003774 ORTHO05D009174 1.8e-40 169.5 129 60.5
Solyc11g027840.2 Solanum lycopersicum HOM05D003774 ORTHO05D009174 2.3e-40 169.1 128 60.2
ATR0320G028 Amborella trichopoda HOM05D003774 ORTHO05D009174 3.0e-40 168.7 129 59.7
AUR62023544 Chenopodium quinoa HOM05D003774 ORTHO05D009174 5.2e-40 167.9 129 59.7
Ah.05g178580 Amaranthus hybridus HOM05D003774 ORTHO05D009174 6.8e-40 167.5 129 60.5
SalBow6G0569 Salvia bowleyana HOM05D003774 ORTHO05D009174 1.5e-39 166.4 129 63.6
A09p31810 Brassica napus HOM05D003774 ORTHO05D009174 7.5e-39 164.1 129 58.1
BraA09t38720Z Brassica rapa HOM05D003774 ORTHO05D009174 7.5e-39 164.1 129 58.1
C06p11130 Brassica napus HOM05D003774 ORTHO05D009174 1.7e-38 162.9 129 57.4
SalBow6G5656 Salvia bowleyana HOM05D003774 ORTHO05D009174 1.7e-38 162.9 129 62.8
BcaC08g43731 Brassica carinata HOM05D003774 ORTHO05D009174 2.2e-38 162.5 129 57.4
BolC6t36236H Brassica oleracea HOM05D003774 ORTHO05D009174 2.2e-38 162.5 129 57.4
SEGI_39255 Sequoiadendron giganteum HOM05D003774 ORTHO05D009174 3.7e-38 161.8 129 57.4
HPP92_011955 Vanilla planifolia HOM05D003774 ORTHO05D009174 2.7e-36 155.6 130 56.9
HPP92_011935 Vanilla planifolia HOM05D003774 ORTHO05D009174 1.7e-35 152.9 130 56.2
Glyma.04G256500 Glycine max HOM05D003774 ORTHO05D009174 2.9e-35 152.1 104 67.3
Zm00001eb348780 Zea mays HOM05D003774 ORTHO05D009174 1.5e-34 149.8 130 53.8
CDE08G0174 Ceratophyllum demersum HOM05D003774 ORTHO05D009174 8.0e-33 144.1 129 53.5
AagrBONN_evm.TU.Sc2ySwM_228.1693 Anthoceros agrestis HOM05D003774 ORTHO05D009174 1.9e-29 132.9 118 50.8
Duzib211G0171 Durio zibethinus HOM05D003774 ORTHO05D009174 4.6e-28 128.3 129 51.9
Mapoly0002s0135 Marchantia polymorpha HOM05D003774 ORTHO05D009174 6.2e-25 117.9 124 43.5
TAR636G2860 Trochodendron aralioides HOM05D003774 ORTHO05D009174 2.3e-24 115.9 90 60.0
CSS0038880 Camellia sinensis var. sinensis HOM05D003774 ORTHO05D009174 1.2e-23 113.6 77 70.1
CSS0003364 Camellia sinensis var. sinensis HOM05D003774 ORTHO05D009174 3.4e-23 112.1 74 70.3
CSS0038100 Camellia sinensis var. sinensis HOM05D003774 ORTHO05D009174 2.3e-19 99.4 77 63.6
CDE02G0175 Ceratophyllum demersum HOM05D003774 ORTHO05D009174 3.3e-18 95.5 129 41.1
Pp3c10_21530 Physcomitrium patens HOM05D003774 ORTHO05D009174 1.1e-16 90.5 127 42.5
CBR_g29932 Chara braunii HOM05D003774 ORTHO05D009174 1.4e-08 63.5 97 37.1
Potri.013G105634 Populus trichocarpa HOM05D003774 ORTHO05D009174 8.9e-08 60.8 34 76.5


User provided reference genes

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