Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G1654 Fragaria x ananassa HOM05D007158 ORTHO05D007424 2.9e-95 352.1 200 100.0
FAN03G1259 Fragaria x ananassa HOM05D007158 ORTHO05D007424 5.7e-91 337.8 200 97.5
FvH4_7g05720 Fragaria vesca HOM05D007158 ORTHO05D007424 5.3e-81 304.7 220 83.6
FAN01G1160 Fragaria x ananassa HOM05D007158 ORTHO05D007424 5.3e-81 304.7 220 83.6
FAN23G0239 Fragaria x ananassa HOM05D007158 ORTHO05D007424 2.2e-71 272.7 222 78.8
RcHm_v2.0_Chr1g0332591 Rosa chinensis HOM05D007158 ORTHO05D007424 4.4e-59 231.9 220 69.5
FAN10G2330 Fragaria x ananassa HOM05D007158 ORTHO05D007424 2.8e-58 229.2 201 77.1
Prupe.3G150100 Prunus persica HOM05D007158 ORTHO05D007424 3.7e-42 175.6 220 50.0
MD09G1258200 Malus domestica HOM05D007158 ORTHO05D007424 9.5e-38 161.0 222 46.4
CiPaw.04G044500 Carya illinoinensis HOM05D007158 ORTHO05D007424 8.6e-31 137.9 205 53.2
Cfa007880 Carpinus fangiana HOM05D007158 ORTHO05D007424 2.8e-29 132.9 218 46.3
PGR004G0702 Punica granatum HOM05D007158 ORTHO05D007424 5.2e-28 128.6 206 41.7
QL02p049322 Quercus lobata HOM05D007158 ORTHO05D007424 1.3e-26 124.0 205 41.5
Ciclev10012598m.g Citrus clementina HOM05D007158 ORTHO05D007424 3.7e-26 122.5 211 39.8
Haze_14197 Corylus avellana HOM05D007158 ORTHO05D007424 8.3e-26 121.3 128 53.9
CANSAT78G1746 Cannabis sativa HOM05D007158 ORTHO05D007424 7.0e-25 118.2 179 51.4
GSVIVG01030945001 Vitis vinifera HOM05D007158 ORTHO05D007424 1.1e-22 110.9 199 40.2
ECA232G0903 Erigeron canadensis HOM05D007158 ORTHO05D007424 1.5e-22 110.5 187 39.0
Manes.01G113800 Manihot esculenta HOM05D007158 ORTHO05D007424 1.5e-22 110.5 205 39.0
Lalb_Chr10g0091481 Lupinus albus HOM05D007158 ORTHO05D007424 2.5e-22 109.8 184 39.7
Duzib138G0519 Durio zibethinus HOM05D007158 ORTHO05D007424 3.3e-22 109.4 208 37.0
Thecc.04G126100 Theobroma cacao HOM05D007158 ORTHO05D007424 3.3e-22 109.4 209 36.8
MELO3C010379.2 Cucumis melo HOM05D007158 ORTHO05D007424 2.1e-21 106.7 224 37.1
Potri.004G094500 Populus trichocarpa HOM05D007158 ORTHO05D007424 2.1e-21 106.7 210 38.6
ClCG07G016450 Citrullus lanatus HOM05D007158 ORTHO05D007424 2.8e-21 106.3 224 39.3
Cpa.g.sc170.15 Carica papaya HOM05D007158 ORTHO05D007424 4.7e-21 105.5 232 39.7
Dinv14854 Davidia involucrata HOM05D007158 ORTHO05D007424 8.1e-21 104.8 183 48.1
Hma1.2p1_0500F.1_g167110 Hydrangea macrophylla HOM05D007158 ORTHO05D007424 8.1e-21 104.8 220 39.1
Glyma.18G293000 Glycine max HOM05D007158 ORTHO05D007424 1.1e-20 104.4 186 46.8
Gohir.A11G161300 Gossypium hirsutum HOM05D007158 ORTHO05D007424 1.4e-20 104.0 225 35.1
CsaV3_4G010370 Cucumis sativus L. HOM05D007158 ORTHO05D007424 2.3e-20 103.2 225 36.9
Gorai.007G178700 Gossypium raimondii HOM05D007158 ORTHO05D007424 4.0e-20 102.4 225 34.7
Potri.017G121000 Populus trichocarpa HOM05D007158 ORTHO05D007424 4.0e-20 102.4 208 42.3
Glyma.02G090200 Glycine max HOM05D007158 ORTHO05D007424 5.2e-20 102.1 183 38.8
CDE04G0479 Ceratophyllum demersum HOM05D007158 ORTHO05D007424 8.9e-20 101.3 222 36.0
HanXRQChr09g0262471 Helianthus annuus HOM05D007158 ORTHO05D007424 8.9e-20 101.3 108 54.6
Gohir.D11G167600 Gossypium hirsutum HOM05D007158 ORTHO05D007424 1.2e-19 100.9 225 33.8
TWI74G0884 Tripterygium wilfordii HOM05D007158 ORTHO05D007424 1.5e-19 100.5 212 33.5
Ah.10g037870 Amaranthus hybridus HOM05D007158 ORTHO05D007424 3.4e-19 99.4 137 45.3
Rhsim08G0084200 Rhododendron simsii HOM05D007158 ORTHO05D007424 4.4e-19 99.0 183 41.0
TAR629G2388 Trochodendron aralioides HOM05D007158 ORTHO05D007424 4.4e-19 99.0 226 35.8
Duzib133G0688 Durio zibethinus HOM05D007158 ORTHO05D007424 5.8e-19 98.6 212 42.9
Nn4g24036 Nelumbo nucifera HOM05D007158 ORTHO05D007424 5.8e-19 98.6 125 51.2
TAR374G0148 Trochodendron aralioides HOM05D007158 ORTHO05D007424 7.5e-19 98.2 227 40.1
VMungo1383G1080 Vigna mungo HOM05D007158 ORTHO05D007424 7.5e-19 98.2 182 41.2
Atru.chr1.1578 Acer truncatum HOM05D007158 ORTHO05D007424 9.9e-19 97.8 187 41.7
arahy.Tifrunner.gnm1.ann1.5M3IQK Arachis hypogaea HOM05D007158 ORTHO05D007424 9.9e-19 97.8 192 44.3
Phvul.008G009100 Phaseolus vulgaris HOM05D007158 ORTHO05D007424 9.9e-19 97.8 217 41.0
TPR.G28397 Trifolium pratense HOM05D007158 ORTHO05D007424 9.9e-19 97.8 213 39.9
ATR0743G078 Amborella trichopoda HOM05D007158 ORTHO05D007424 1.7e-18 97.1 182 46.7
Hund13698 Selenicereus undatus HOM05D007158 ORTHO05D007424 1.7e-18 97.1 135 46.7
COL.COLO4_03615 Corchorus olitorius HOM05D007158 ORTHO05D007424 2.9e-18 96.3 188 36.2
Sabra17G0103400 Salix brachista HOM05D007158 ORTHO05D007424 3.7e-18 95.9 202 38.1
Lj4A182G65 Lonicera japonica HOM05D007158 ORTHO05D007424 4.9e-18 95.5 99 49.5
vmacro18064 Vaccinium macrocarpon HOM05D007158 ORTHO05D007424 6.4e-18 95.1 101 55.4
Ca_08098_v3 Cicer arietinum L. HOM05D007158 ORTHO05D007424 1.1e-17 94.4 178 37.1
AUR62023262 Chenopodium quinoa HOM05D007158 ORTHO05D007424 1.4e-17 94.0 132 48.5
DCAR_025891 Daucus carota HOM05D007158 ORTHO05D007424 2.4e-17 93.2 114 48.2
Lsat_1_v5_gn_4_156301 Lactuca sativa HOM05D007158 ORTHO05D007424 3.2e-17 92.8 204 37.7
Cc07_g08430 Coffea canephora HOM05D007158 ORTHO05D007424 4.1e-17 92.4 221 33.0
Medtr7g082850 Medicago truncatula HOM05D007158 ORTHO05D007424 4.1e-17 92.4 179 40.8
Sc10g0001000 Simmondsia chinensis HOM05D007158 ORTHO05D007424 4.1e-17 92.4 93 58.1
Zm00001eb300940 Zea mays HOM05D007158 ORTHO05D007424 4.1e-17 92.4 110 48.2
CDE06G2846 Ceratophyllum demersum HOM05D007158 ORTHO05D007424 5.4e-17 92.0 214 40.7
Migut.H00250 Erythranthe guttata HOM05D007158 ORTHO05D007424 5.4e-17 92.0 221 33.9
HPP92_023114 Vanilla planifolia HOM05D007158 ORTHO05D007424 5.4e-17 92.0 216 42.6
Psat3g097040 Pisum sativum HOM05D007158 ORTHO05D007424 7.1e-17 91.7 223 37.7
PSO339G0418 Papaver somniferum HOM05D007158 ORTHO05D007424 1.2e-16 90.9 98 56.1
Eucgr.F02798 Eucalyptus grandis HOM05D007158 ORTHO05D007424 1.6e-16 90.5 147 38.8
SGA_v2.0_scaffold202G41480 Striga asiatica HOM05D007158 ORTHO05D007424 1.6e-16 90.5 195 45.1
Actinidia17647 Actinidia chinensis HOM05D007158 ORTHO05D007424 2.1e-16 90.1 198 37.4
Aqoxy3G00164 Aquilegia oxysepala HOM05D007158 ORTHO05D007424 2.1e-16 90.1 117 46.2
MSTRG.2781 Avicennia marina HOM05D007158 ORTHO05D007424 2.7e-16 89.7 186 34.9
arahy.Tifrunner.gnm1.ann1.896A9W Arachis hypogaea HOM05D007158 ORTHO05D007424 4.6e-16 89.0 190 43.2
Sabra04G0063800 Salix brachista HOM05D007158 ORTHO05D007424 7.8e-16 88.2 194 40.2
PSO384G2845 Papaver somniferum HOM05D007158 ORTHO05D007424 1.0e-15 87.8 112 50.9
SHI25695 Sapria himalayana HOM05D000002 ORTHO05D000001 1.0e-15 87.8 91 45.1
CAN.G225.14 Capsicum annuum HOM05D007158 ORTHO05D007424 1.3e-15 87.4 230 32.6
Os01g0505700 Oryza sativa ssp. japonica HOM05D007158 ORTHO05D007424 1.3e-15 87.4 126 43.7
Nitab4.5_0000036g0590 Nicotiana tabacum HOM05D007158 ORTHO05D007424 1.7e-15 87.0 228 32.0
EL10Ac2g04517 Beta vulgaris HOM05D007158 ORTHO05D007424 5.1e-15 85.5 231 35.9
THA.LOC104809979 Tarenaya hassleriana HOM05D007158 ORTHO05D007424 5.1e-15 85.5 229 30.1
Rhsim10G0076900 Rhododendron simsii HOM05D007158 ORTHO05D007424 1.1e-14 84.3 148 40.5
Lj1g0013464 Lotus japonicus HOM05D007158 ORTHO05D007424 1.5e-14 84.0 169 43.8
Nitab4.5_0002644g0050 Nicotiana tabacum HOM05D007158 ORTHO05D007424 1.5e-14 84.0 227 38.3
Solyc02g063280.4 Solanum lycopersicum HOM05D007158 ORTHO05D007424 1.5e-14 84.0 238 31.5
Dinv33973 Davidia involucrata HOM05D007158 ORTHO05D007424 2.5e-14 83.2 226 33.2
Sopen02g014350 Solanum pennellii HOM05D007158 ORTHO05D007424 7.3e-14 81.6 236 30.9
PGSC0003DMG400010413 Solanum tuberosum HOM05D007158 ORTHO05D007424 7.3e-14 81.6 230 30.9
Oeu047435.1 Olea europaea HOM05D007158 ORTHO05D007424 1.2e-13 80.9 242 33.5
Peaxi162Scf00343g00058 Petunia axillaris HOM05D007158 ORTHO05D007424 3.6e-13 79.3 233 31.8
Sabra17G0100100 Salix brachista HOM05D007158 ORTHO05D007424 1.1e-12 77.8 191 36.6
Thhalv10023615m.g Eutrema salsugineum HOM05D011338 ORTHO05D007424 1.2e-11 74.3 172 36.6
Mapoly0099s0058 Marchantia polymorpha HOM05D007158 ORTHO05D007424 4.9e-10 68.9 93 44.1
CARHR052290 Cardamine hirsuta HOM05D007158 ORTHO05D007424 6.4e-10 68.6 167 39.5
SMO119G0024 Selaginella moellendorffii HOM05D007158 ORTHO05D007424 6.4e-10 68.6 59 47.5
BolC1t03688H Brassica oleracea HOM05D011338 ORTHO05D007424 8.4e-10 68.2 209 37.3
Rhsim10G0074300 Rhododendron simsii HOM05D007158 ORTHO05D007424 8.4e-10 68.2 137 38.7
AT1G60640 Arabidopsis thaliana HOM05D007158 ORTHO05D007424 1.9e-09 67.0 203 36.0
BcaC09g49385 Brassica carinata HOM05D011338 ORTHO05D007424 4.1e-09 65.9 201 33.8
C01p37190 Brassica napus HOM05D011338 ORTHO05D007424 4.1e-09 65.9 201 33.8
Sed0005493 Sechium edule HOM05D007158 ORTHO05D007424 7.1e-09 65.1 149 36.9
AL2G15950 Arabidopsis lyrata HOM05D011338 ORTHO05D007424 9.2e-09 64.7 197 33.0
CBR_g32195 Chara braunii HOM05D007158 ORTHO05D007424 2.1e-08 63.5 102 34.3
Pp3c14_9040 Physcomitrium patens HOM05D007158 ORTHO05D007424 4.6e-08 62.4 85 41.2
AagrBONN_evm.TU.Sc2ySwM_117.711 Anthoceros agrestis HOM05D007158 ORTHO05D007424 7.8e-08 61.6 205 28.8
A01p29410 Brassica napus HOM05D011338 ORTHO05D007424 7.8e-08 61.6 196 36.2
Sp2g04080 Schrenkiella parvula HOM05D011338 ORTHO05D007424 7.8e-08 61.6 199 33.2
Carub.0002s0469 Capsella rubella HOM05D007158 ORTHO05D007424 2.3e-07 60.1 162 31.5
Oeu061824.1 Olea europaea HOM05D007158 ORTHO05D007424 2.3e-07 60.1 149 32.9
BraA01t03075Z Brassica rapa HOM05D011338 ORTHO05D007424 1.1e-06 57.8 206 31.6


User provided reference genes

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