Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G1623 Fragaria x ananassa HOM05D005360 ORTHO05D006501 8.7e-66 253.4 124 100.0
FvH4_3g30230 Fragaria vesca HOM05D005360 ORTHO05D006501 4.1e-23 111.7 66 78.8
FAN11G3336 Fragaria x ananassa HOM05D005360 ORTHO05D006501 4.1e-23 111.7 66 78.8
FAN21G0874 Fragaria x ananassa HOM05D005360 ORTHO05D006501 2.0e-22 109.4 66 77.3
RcHm_v2.0_Chr5g0056101 Rosa chinensis HOM05D005360 ORTHO05D006501 5.9e-22 107.8 75 68.0
Glyma.13G219600 Glycine max HOM05D005360 ORTHO05D006501 1.4e-18 96.7 68 67.6
CANSAT64G2904 Cannabis sativa HOM05D005360 ORTHO05D006501 4.0e-18 95.1 80 62.5
CANSAT64G2995 Cannabis sativa HOM05D005360 ORTHO05D006501 4.0e-18 95.1 80 62.5
FAN09G1017 Fragaria x ananassa HOM05D005360 ORTHO05D006501 1.2e-17 93.6 46 93.5
Migut.D02306 Erythranthe guttata HOM05D005360 ORTHO05D006501 2.0e-17 92.8 76 59.2
TPR.G32397 Trifolium pratense HOM05D005360 ORTHO05D006501 2.6e-17 92.4 62 71.0
MSTRG.21078 Avicennia marina HOM05D005360 ORTHO05D006501 3.4e-17 92.0 80 58.8
Prupe.6G115300 Prunus persica HOM05D005360 ORTHO05D006501 3.4e-17 92.0 74 63.5
Ca_01695_v3 Cicer arietinum L. HOM05D005360 ORTHO05D006501 4.4e-17 91.7 72 59.7
Phvul.006G166300 Phaseolus vulgaris HOM05D005360 ORTHO05D006501 5.7e-17 91.3 62 71.0
Lj3g0014716 Lotus japonicus HOM05D005360 ORTHO05D006501 9.8e-17 90.5 62 67.7
Medtr2g084545 Medicago truncatula HOM05D005360 ORTHO05D006501 9.8e-17 90.5 66 63.6
Rhsim13G0102900 Rhododendron simsii HOM05D005360 ORTHO05D006501 9.8e-17 90.5 70 60.0
Eucgr.B03910 Eucalyptus grandis HOM05D005360 ORTHO05D006501 1.3e-16 90.1 69 59.4
MELO3C021472.2 Cucumis melo HOM05D005360 ORTHO05D006501 2.2e-16 89.4 75 54.7
CsaV3_6G014530 Cucumis sativus L. HOM05D005360 ORTHO05D006501 2.8e-16 89.0 75 54.7
SGA_v2.0_scaffold193G40720 Striga asiatica HOM05D005360 ORTHO05D006501 2.8e-16 89.0 75 56.0
DCAR_015495 Daucus carota HOM05D005360 ORTHO05D006501 6.3e-16 87.8 75 56.0
Sed0004275 Sechium edule HOM05D005360 ORTHO05D006501 6.3e-16 87.8 75 53.3
COL.COLO4_19249 Corchorus olitorius HOM05D000737 ORTHO05D000581 8.3e-16 87.4 75 60.0
MD11G1152100 Malus domestica HOM05D005360 ORTHO05D006501 8.3e-16 87.4 66 65.2
Cc04_g14880 Coffea canephora HOM05D005360 ORTHO05D006501 1.4e-15 86.7 65 63.1
Haze_23502 Corylus avellana HOM05D005360 ORTHO05D006501 1.4e-15 86.7 61 70.5
Lalb_Chr24g0395031 Lupinus albus HOM05D005360 ORTHO05D006501 1.4e-15 86.7 62 66.1
PGR102G1574 Punica granatum HOM05D005360 ORTHO05D006501 1.4e-15 86.7 72 58.3
MD03G1130500 Malus domestica HOM05D005360 ORTHO05D006501 1.8e-15 86.3 75 56.0
vmacro03239 Vaccinium macrocarpon HOM05D005360 ORTHO05D006501 2.4e-15 85.9 71 57.7
FAN09G0332 Fragaria x ananassa HOM05D005360 ORTHO05D006501 4.1e-15 85.1 40 95.0
Nitab4.5_0000442g0050 Nicotiana tabacum HOM05D005360 ORTHO05D006501 4.1e-15 85.1 66 60.6
Hma1.2p1_0051F.1_g029700 Hydrangea macrophylla HOM05D005360 ORTHO05D006501 5.4e-15 84.7 71 56.3
Hma1.2p1_0051F.1_g029710 Hydrangea macrophylla HOM05D005360 ORTHO05D006501 5.4e-15 84.7 71 56.3
Peaxi162Scf00150g00315 Petunia axillaris HOM05D005360 ORTHO05D006501 5.4e-15 84.7 65 61.5
Thecc.09G295200 Theobroma cacao HOM05D005360 ORTHO05D006501 5.4e-15 84.7 71 59.2
Nn6g35157 Nelumbo nucifera HOM05D005360 ORTHO05D006501 7.0e-15 84.3 75 56.0
Gohir.A07G106300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 9.1e-15 84.0 71 59.2
CiPaw.14G105400 Carya illinoinensis HOM05D005360 ORTHO05D006501 1.2e-14 83.6 75 54.7
SalBow6G0303 Salvia bowleyana HOM05D005360 ORTHO05D006501 1.2e-14 83.6 75 52.0
Sp1g06870 Schrenkiella parvula HOM05D005360 ORTHO05D006501 1.2e-14 83.6 66 60.6
unitig_899.g14961 Utricularia gibba HOM05D005360 ORTHO05D006501 1.2e-14 83.6 70 55.7
Ciclev10029076m.g Citrus clementina HOM05D005360 ORTHO05D006501 1.6e-14 83.2 67 59.7
Dinv29396 Davidia involucrata HOM05D005360 ORTHO05D006501 2.0e-14 82.8 75 54.7
Duzib168G1167 Durio zibethinus HOM05D005360 ORTHO05D006501 2.0e-14 82.8 71 57.7
Manes.11G154700 Manihot esculenta HOM05D005360 ORTHO05D006501 2.0e-14 82.8 67 61.2
Actinidia24162 Actinidia chinensis HOM05D005360 ORTHO05D006501 2.7e-14 82.4 75 52.0
CSS0014580 Camellia sinensis var. sinensis HOM05D005360 ORTHO05D006501 2.7e-14 82.4 75 56.0
Sc21g0004290 Simmondsia chinensis HOM05D005360 ORTHO05D006501 2.7e-14 82.4 75 53.3
ATR0665G582 Amborella trichopoda HOM05D005360 ORTHO05D006501 3.5e-14 82.0 71 53.5
C08p50100 Brassica napus HOM05D005360 ORTHO05D006501 3.5e-14 82.0 66 60.6
BolC8t52540H Brassica oleracea HOM05D005360 ORTHO05D006501 3.5e-14 82.0 66 60.6
Gohir.D07G110200 Gossypium hirsutum HOM05D005360 ORTHO05D006501 4.5e-14 81.6 71 57.7
Gorai.001G118400 Gossypium raimondii HOM05D005360 ORTHO05D006501 4.5e-14 81.6 71 57.7
TWI31G0773 Tripterygium wilfordii HOM05D005360 ORTHO05D006501 4.5e-14 81.6 73 57.5
AT1G08220 Arabidopsis thaliana HOM05D005360 ORTHO05D006501 5.9e-14 81.3 70 51.4
AUR62031793 Chenopodium quinoa HOM05D005360 ORTHO05D006501 5.9e-14 81.3 75 52.0
CAN.G546.64 Capsicum annuum HOM05D005360 ORTHO05D006501 7.7e-14 80.9 75 52.0
Lj1A216T24 Lonicera japonica HOM05D005360 ORTHO05D006501 1.0e-13 80.5 71 54.9
Oeu026987.1 Olea europaea HOM05D005360 ORTHO05D006501 1.0e-13 80.5 67 58.2
Psat5g252440 Pisum sativum HOM05D005360 ORTHO05D006501 1.0e-13 80.5 62 59.7
Sopen11g026340 Solanum pennellii HOM05D005360 ORTHO05D006501 1.0e-13 80.5 66 56.1
GSVIVG01031434001 Vitis vinifera HOM05D005360 ORTHO05D006501 1.0e-13 80.5 67 61.2
Lsat_1_v5_gn_6_42160 Lactuca sativa HOM05D005360 ORTHO05D006501 1.3e-13 80.1 66 56.1
MBI01_g19099_MAGBIO Magnolia biondii HOM05D005360 ORTHO05D006501 1.3e-13 80.1 67 56.7
Solyc11g066610.2 Solanum lycopersicum HOM05D005360 ORTHO05D006501 1.3e-13 80.1 66 56.1
Ah.01g016120 Amaranthus hybridus HOM05D005360 ORTHO05D006501 2.2e-13 79.3 75 49.3
Carub.0001s0758 Capsella rubella HOM05D005360 ORTHO05D006501 2.2e-13 79.3 70 51.4
QL01p014311 Quercus lobata HOM05D005360 ORTHO05D006501 2.2e-13 79.3 71 56.3
PGSC0003DMG400000427 Solanum tuberosum HOM05D005360 ORTHO05D006501 2.2e-13 79.3 66 56.1
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 2.9e-13 79.0 62 61.3
A08p35270 Brassica napus HOM05D005360 ORTHO05D006501 2.9e-13 79.0 66 56.1
BraA08t35436Z Brassica rapa HOM05D005360 ORTHO05D006501 2.9e-13 79.0 66 56.1
THA.LOC104826399 Tarenaya hassleriana HOM05D005360 ORTHO05D006501 2.9e-13 79.0 76 51.3
Aqoxy1G01027 Aquilegia oxysepala HOM05D005360 ORTHO05D006501 3.8e-13 78.6 68 52.9
Sabra09G0000500 Salix brachista HOM05D005360 ORTHO05D006501 3.8e-13 78.6 67 56.7
THA.LOC104800565 Tarenaya hassleriana HOM05D005360 ORTHO05D006501 3.8e-13 78.6 75 49.3
EL10Ac9g21036 Beta vulgaris HOM05D005360 ORTHO05D006501 5.0e-13 78.2 75 52.0
BcaC07g42518 Brassica carinata HOM05D005360 ORTHO05D006501 5.0e-13 78.2 66 57.6
Gohir.A06G100002 Gossypium hirsutum HOM05D005360 ORTHO05D006501 5.0e-13 78.2 70 54.3
Hund07728 Selenicereus undatus HOM05D005360 ORTHO05D006501 5.0e-13 78.2 71 52.1
CARHR008050 Cardamine hirsuta HOM05D005360 ORTHO05D006501 6.5e-13 77.8 66 56.1
HanXRQChr13g0403531 Helianthus annuus HOM05D005360 ORTHO05D006501 6.5e-13 77.8 68 55.9
Potri.009G002000 Populus trichocarpa HOM05D005360 ORTHO05D006501 6.5e-13 77.8 67 56.7
Atru.chr3.3432 Acer truncatum HOM05D005360 ORTHO05D006501 8.5e-13 77.4 67 59.7
Aa31LG1G18020 Aethionema arabicum HOM05D005360 ORTHO05D006501 1.1e-12 77.0 70 51.4
Gohir.A05G054800 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.1e-12 77.0 61 63.9
TAR633G1180 Trochodendron aralioides HOM05D005360 ORTHO05D006501 1.1e-12 77.0 75 49.3
Thhalv10008429m.g Eutrema salsugineum HOM05D005360 ORTHO05D006501 1.5e-12 76.6 66 54.5
Gohir.1Z049633 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.5e-12 76.6 71 54.9
Gohir.A07G000166 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.9e-12 76.3 71 53.5
arahy.Tifrunner.gnm1.ann1.9X9VA5 Arachis hypogaea HOM05D005360 ORTHO05D006501 3.2e-12 75.5 61 60.7
C08p03560 Brassica napus HOM05D005360 ORTHO05D006501 3.2e-12 75.5 66 54.5
Gohir.A02G097303 Gossypium hirsutum HOM05D005360 ORTHO05D006501 3.2e-12 75.5 72 54.2
AL1G18630 Arabidopsis lyrata HOM05D005360 ORTHO05D006501 4.2e-12 75.1 70 48.6
MBI01_g31369_MAGBIO Magnolia biondii HOM05D005360 ORTHO05D006501 6.1e-11 71.2 55 61.8
BolC8t47160H Brassica oleracea HOM05D005360 ORTHO05D006501 1.0e-10 70.5 66 51.5
PSO339G5504 Papaver somniferum HOM05D005360 ORTHO05D006501 5.2e-10 68.2 67 50.7
CDE09G0858 Ceratophyllum demersum HOM05D005360 ORTHO05D006501 8.8e-10 67.4 70 44.3
PSO063G2369 Papaver somniferum HOM05D005360 ORTHO05D006501 1.2e-09 67.0 67 49.3
Os05g0176500 Oryza sativa ssp. japonica HOM05D005360 ORTHO05D006501 5.7e-09 64.7 80 42.5
SHI06160 Sapria himalayana HOM05D005360 ORTHO05D006501 9.8e-09 63.9 68 47.1
HPP92_015112 Vanilla planifolia HOM05D005360 ORTHO05D006501 6.3e-08 61.2 79 41.8
HPP92_015033 Vanilla planifolia HOM05D005360 ORTHO05D006501 1.8e-07 59.7 79 41.8
BcaB03g13345 Brassica carinata HOM05D005360 ORTHO05D006501 3.1e-07 58.9 47 57.4
TAR633G1639 Trochodendron aralioides HOM05D005360 ORTHO05D006501 9.2e-07 57.4 62 43.5
Zm00001eb345720 Zea mays HOM05D005360 ORTHO05D006501 2.0e-06 56.2 67 41.8


User provided reference genes

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