Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G1595 Fragaria x ananassa HOM05D004289 ORTHO05D005141 1.7e-97 359.4 184 100.0
FAN13G3078 Fragaria x ananassa HOM05D004289 ORTHO05D005141 2.5e-37 159.5 85 98.8
FvH4_5g32580 Fragaria vesca HOM05D004289 ORTHO05D005141 2.1e-36 156.4 85 96.5
FAN18G1872 Fragaria x ananassa HOM05D004289 ORTHO05D005141 8.2e-36 154.5 84 96.4
RcHm_v2.0_Chr7g0229261 Rosa chinensis HOM05D004289 ORTHO05D005141 1.4e-27 127.1 88 81.8
RcHm_v2.0_Chr3g0495521 Rosa chinensis HOM05D004289 ORTHO05D005141 1.1e-21 107.5 71 80.3
RcHm_v2.0_Chr5g0063911 Rosa chinensis HOM05D004289 ORTHO05D005141 8.2e-20 101.3 71 76.1
MD15G1403500 Malus domestica HOM05D004289 ORTHO05D005141 1.1e-19 100.9 97 60.8
Prupe.1G549500 Prunus persica HOM05D004289 ORTHO05D005141 1.2e-18 97.4 99 61.6
MD08G1216400 Malus domestica HOM05D004289 ORTHO05D005141 5.9e-18 95.1 101 59.4
MD05G1210300 Malus domestica HOM05D004289 ORTHO05D005141 1.3e-17 94.0 101 58.4
QL09p003196 Quercus lobata HOM05D004289 ORTHO05D005141 1.3e-17 94.0 92 64.1
QL09p004791 Quercus lobata HOM05D004289 ORTHO05D005141 1.3e-17 94.0 92 64.1
CiPaw.03G018600 Carya illinoinensis HOM05D004289 ORTHO05D005141 8.5e-17 91.3 95 61.1
Aqoxy5G00854 Aquilegia oxysepala HOM05D004289 ORTHO05D005141 1.1e-16 90.9 92 54.3
TAR628G0462 Trochodendron aralioides HOM05D004289 ORTHO05D005141 3.2e-16 89.4 92 57.6
CiPaw.04G012500 Carya illinoinensis HOM05D004289 ORTHO05D005141 7.2e-16 88.2 92 58.7
Medtr4g032200 Medicago truncatula HOM05D004289 ORTHO05D005141 7.2e-16 88.2 61 73.8
TPR.G34161 Trifolium pratense HOM05D004289 ORTHO05D005141 7.2e-16 88.2 80 65.0
MELO3C022208.2 Cucumis melo HOM05D004289 ORTHO05D005141 9.4e-16 87.8 95 54.7
Glyma.08G237900 Glycine max HOM05D004289 ORTHO05D005141 1.2e-15 87.4 61 72.1
MBI17_g24966_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 1.2e-15 87.4 81 55.6
SalBow7G0958 Salvia bowleyana HOM05D004289 ORTHO05D005141 1.6e-15 87.0 60 70.0
Cfa008122 Carpinus fangiana HOM05D000042 ORTHO05D000028 2.7e-15 86.3 64 67.2
Phvul.011G000300 Phaseolus vulgaris HOM05D004289 ORTHO05D005141 2.7e-15 86.3 61 70.5
CsaV3_5G040360 Cucumis sativus L. HOM05D004289 ORTHO05D005141 4.7e-15 85.5 95 53.7
Lj3g0023226 Lotus japonicus HOM05D004289 ORTHO05D005141 4.7e-15 85.5 116 42.2
ClCG08G000420 Citrullus lanatus HOM05D004289 ORTHO05D005141 7.9e-15 84.7 96 54.2
Sabra19G0088300 Salix brachista HOM05D004289 ORTHO05D005141 7.9e-15 84.7 93 52.7
Psat7g226600 Pisum sativum HOM05D004289 ORTHO05D005141 1.0e-14 84.3 61 72.1
MBI06_g06694_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 1.8e-14 83.6 104 47.1
RcHm_v2.0_Chr7g0230041 Rosa chinensis HOM05D004289 ORTHO05D005141 1.8e-14 83.6 61 68.9
Haze_13910 Corylus avellana HOM05D002143 ORTHO05D002260 3.0e-14 82.8 60 71.7
VMungo0540G1552 Vigna mungo HOM05D004289 ORTHO05D005141 3.9e-14 82.4 61 65.6
TAR381G0514 Trochodendron aralioides HOM05D004289 ORTHO05D005141 5.1e-14 82.0 92 54.3
Potri.019G077100 Populus trichocarpa HOM05D004289 ORTHO05D005141 6.7e-14 81.6 91 52.7
GSVIVG01025943001 Vitis vinifera HOM05D004289 ORTHO05D005141 6.7e-14 81.6 93 50.5
TWI14G0848 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 8.8e-14 81.3 61 65.6
TWI23G1156 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 8.8e-14 81.3 61 65.6
Sed0006384 Sechium edule HOM05D004289 ORTHO05D005141 2.0e-13 80.1 92 52.2
Nn5g27488 Nelumbo nucifera HOM05D004289 ORTHO05D005141 2.6e-13 79.7 92 52.2
Sp2g05730 Schrenkiella parvula HOM05D004289 ORTHO05D005141 3.3e-13 79.3 93 47.3
AUR62028456 Chenopodium quinoa HOM05D004289 ORTHO05D005141 9.7e-13 77.8 93 48.4
AUR62042238 Chenopodium quinoa HOM05D004289 ORTHO05D005141 9.7e-13 77.8 93 49.5
MBI18_g30384_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 9.7e-13 77.8 70 57.1
unitig_32.g11200 Utricularia gibba HOM05D004289 ORTHO05D005141 9.7e-13 77.8 96 44.8
ATR1136G135 Amborella trichopoda HOM05D004289 ORTHO05D005141 1.3e-12 77.4 67 56.7
Oeu048223.2 Olea europaea HOM05D004289 ORTHO05D005141 1.3e-12 77.4 103 41.7
Sabra01G0171700 Salix brachista HOM05D004289 ORTHO05D005141 1.3e-12 77.4 99 44.4
Peaxi162Scf00688g00334 Petunia axillaris HOM05D004289 ORTHO05D005141 2.8e-12 76.3 83 51.8
arahy.Tifrunner.gnm1.ann1.M3EZX1 Arachis hypogaea HOM05D004289 ORTHO05D005141 3.7e-12 75.9 107 44.9
CARHR054450 Cardamine hirsuta HOM05D004289 ORTHO05D005141 3.7e-12 75.9 80 52.5
Migut.C01335 Erythranthe guttata HOM05D004289 ORTHO05D005141 3.7e-12 75.9 61 65.6
Gohir.A03G215700 Gossypium hirsutum HOM05D004289 ORTHO05D005141 3.7e-12 75.9 91 49.5
EL10Ac6g14140 Beta vulgaris HOM05D004289 ORTHO05D005141 4.8e-12 75.5 63 58.7
C05p07700 Brassica napus HOM05D004289 ORTHO05D005141 4.8e-12 75.5 93 46.2
arahy.Tifrunner.gnm1.ann1.291MDK Arachis hypogaea HOM05D004289 ORTHO05D005141 6.3e-12 75.1 61 62.3
Duzib052G0484 Durio zibethinus HOM05D004289 ORTHO05D005141 6.3e-12 75.1 91 50.5
HanXRQChr03g0067991 Helianthus annuus HOM05D004289 ORTHO05D005141 6.3e-12 75.1 76 50.0
Potri.004G226100 Populus trichocarpa HOM05D004289 ORTHO05D005141 6.3e-12 75.1 99 43.4
BraA06t23844Z Brassica rapa HOM05D004289 ORTHO05D005141 8.2e-12 74.7 88 48.9
Gohir.D02G237200 Gossypium hirsutum HOM05D004289 ORTHO05D005141 8.2e-12 74.7 91 49.5
Gorai.005G265800 Gossypium raimondii HOM05D004289 ORTHO05D005141 8.2e-12 74.7 91 49.5
Nitab4.5_0029023g0010 Nicotiana tabacum HOM05D004289 ORTHO05D005141 8.2e-12 74.7 92 52.2
Sc16g0004250 Simmondsia chinensis HOM05D004289 ORTHO05D005141 8.2e-12 74.7 90 48.9
Thecc.02G016600 Theobroma cacao HOM05D004289 ORTHO05D005141 8.2e-12 74.7 90 51.1
MD15G1438300 Malus domestica HOM05D004289 ORTHO05D005141 1.1e-11 74.3 86 50.0
Ah.02g128340 Amaranthus hybridus HOM05D004289 ORTHO05D005141 3.1e-11 72.8 117 45.3
C08p13100 Brassica napus HOM05D004289 ORTHO05D005141 3.1e-11 72.8 91 46.2
Sopen11g012540 Solanum pennellii HOM05D004289 ORTHO05D005141 3.1e-11 72.8 87 50.6
SGA_v2.0_scaffold131G34372 Striga asiatica HOM05D004289 ORTHO05D005141 3.1e-11 72.8 91 48.4
GSVIVG01023230001 Vitis vinifera HOM05D004289 ORTHO05D005141 3.1e-11 72.8 90 52.2
A06p06330 Brassica napus HOM05D004289 ORTHO05D005141 4.1e-11 72.4 97 47.4
Carub.0002s0680 Capsella rubella HOM05D004289 ORTHO05D005141 4.1e-11 72.4 91 45.1
PGSC0003DMG400025523 Solanum tuberosum HOM05D004289 ORTHO05D005141 4.1e-11 72.4 84 50.0
Ciclev10003782m.g Citrus clementina HOM05D004289 ORTHO05D005141 7.0e-11 71.6 69 58.0
Prupe.1G581300 Prunus persica HOM05D004289 ORTHO05D005141 7.0e-11 71.6 93 46.2
AT1G57765 Arabidopsis thaliana HOM05D004289 ORTHO05D005141 9.1e-11 71.2 68 52.9
ECA236G0617 Erigeron canadensis HOM05D004289 ORTHO05D005141 9.1e-11 71.2 80 50.0
AL1G67510 Arabidopsis lyrata HOM05D004289 ORTHO05D005141 1.2e-10 70.9 82 50.0
Thhalv10009166m.g Eutrema salsugineum HOM05D004289 ORTHO05D005141 1.2e-10 70.9 87 46.0
FAN10G0807 Fragaria x ananassa HOM05D004289 ORTHO05D005141 1.2e-10 70.9 81 50.6
MD08G1244000 Malus domestica HOM05D004289 ORTHO05D005141 1.2e-10 70.9 95 47.4
BolC8t48938H Brassica oleracea HOM05D002143 ORTHO05D002260 1.6e-10 70.5 68 52.9
CSS0038950 Camellia sinensis var. sinensis HOM05D004289 ORTHO05D005141 1.6e-10 70.5 92 45.7
Carub.0001s0900 Capsella rubella HOM05D004289 ORTHO05D005141 1.6e-10 70.5 83 45.8
PSO017G2658 Papaver somniferum HOM05D004289 ORTHO05D005141 1.6e-10 70.5 99 47.5
BolC5t29521H Brassica oleracea HOM05D004289 ORTHO05D005141 2.0e-10 70.1 62 59.7
CSS0038337 Camellia sinensis var. sinensis HOM05D004289 ORTHO05D005141 2.0e-10 70.1 92 48.9
Thhalv10023770m.g Eutrema salsugineum HOM05D004289 ORTHO05D005141 2.0e-10 70.1 83 44.6
THA.LOC104816824 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 2.0e-10 70.1 57 56.1
THA.LOC104823700 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 2.0e-10 70.1 79 49.4
Atru.chr6.550 Acer truncatum HOM05D004289 ORTHO05D005141 2.6e-10 69.7 47 70.2
AT1G09645 Arabidopsis thaliana HOM05D004289 ORTHO05D005141 2.6e-10 69.7 82 50.0
Cc10_g09380 Coffea canephora HOM05D004289 ORTHO05D005141 2.6e-10 69.7 58 60.3
PSO170G0294 Papaver somniferum HOM05D004289 ORTHO05D005141 2.6e-10 69.7 98 44.9
RcHm_v2.0_Chr7g0220501 Rosa chinensis HOM05D004289 ORTHO05D005141 2.6e-10 69.7 93 46.2
AL1G20190 Arabidopsis lyrata HOM05D004289 ORTHO05D005141 3.5e-10 69.3 87 46.0
BcaB03g13311 Brassica carinata HOM05D004289 ORTHO05D005141 3.5e-10 69.3 85 44.7
CARHR009620 Cardamine hirsuta HOM05D004289 ORTHO05D005141 3.5e-10 69.3 60 53.3
COL.COLO4_17708 Corchorus olitorius HOM05D004289 ORTHO05D005141 3.5e-10 69.3 91 44.0
vmacro19856 Vaccinium macrocarpon HOM05D004289 ORTHO05D005141 3.5e-10 69.3 66 54.5
Lsat_1_v5_gn_5_104580 Lactuca sativa HOM05D004289 ORTHO05D005141 4.5e-10 68.9 90 45.6
Sp1g08260 Schrenkiella parvula HOM05D004289 ORTHO05D005141 7.7e-10 68.2 54 59.3
Actinidia38989 Actinidia chinensis HOM05D004289 ORTHO05D005141 1.0e-09 67.8 95 44.2
Potri.003G005400 Populus trichocarpa HOM05D004289 ORTHO05D005141 1.0e-09 67.8 99 43.4
BraA08t35355Z Brassica rapa HOM05D002143 ORTHO05D002260 1.3e-09 67.4 66 54.5
HanXRQChr06g0182751 Helianthus annuus HOM05D004289 ORTHO05D005141 2.2e-09 66.6 91 44.0
Nitab4.5_0000016g0420 Nicotiana tabacum HOM05D004289 ORTHO05D005141 2.2e-09 66.6 55 61.8
Nitab4.5_0005169g0070 Nicotiana tabacum HOM05D004289 ORTHO05D005141 2.9e-09 66.2 61 52.5
FAN18G0926 Fragaria x ananassa HOM05D004289 ORTHO05D005141 3.8e-09 65.9 78 50.0
HPP92_002618 Vanilla planifolia HOM05D004289 ORTHO05D005141 3.8e-09 65.9 87 41.4
HPP92_002677 Vanilla planifolia HOM05D004289 ORTHO05D005141 3.8e-09 65.9 70 48.6
Aa31LG1G5340 Aethionema arabicum HOM05D004289 ORTHO05D005141 5.0e-09 65.5 87 41.4
MSTRG.20324 Avicennia marina HOM05D004289 ORTHO05D005141 5.0e-09 65.5 95 40.0
BcaC07g41867 Brassica carinata HOM05D004289 ORTHO05D005141 5.0e-09 65.5 54 59.3
C08p49340 Brassica napus HOM05D004289 ORTHO05D005141 5.0e-09 65.5 54 59.3
BolC8t52471H Brassica oleracea HOM05D004289 ORTHO05D005141 6.5e-09 65.1 54 59.3
MELO3C016488.2 Cucumis melo HOM05D004289 ORTHO05D005141 6.5e-09 65.1 126 36.5
unitig_748.g7732 Utricularia gibba HOM05D004289 ORTHO05D005141 2.5e-08 63.2 80 41.2
CDE08G0453 Ceratophyllum demersum HOM05D004289 ORTHO05D005141 3.2e-08 62.8 61 47.5
Manes.10G116200 Manihot esculenta HOM05D004289 ORTHO05D005141 3.2e-08 62.8 87 47.1
Lsat_1_v5_gn_9_119620 Lactuca sativa HOM05D004289 ORTHO05D005141 4.2e-08 62.4 94 43.6
Manes.07G025900 Manihot esculenta HOM05D004289 ORTHO05D005141 4.2e-08 62.4 97 44.3
Migut.B00750 Erythranthe guttata HOM05D004289 ORTHO05D005141 5.5e-08 62.0 61 54.1
FvH4_5g28260 Fragaria vesca HOM05D004289 ORTHO05D005141 5.5e-08 62.0 60 50.0
PGR042G0739 Punica granatum HOM05D004289 ORTHO05D005141 5.5e-08 62.0 63 52.4
Duzib248G0764 Durio zibethinus HOM05D004289 ORTHO05D005141 7.2e-08 61.6 41 68.3
Zm00001eb288300 Zea mays HOM05D004289 ORTHO05D005141 2.1e-07 60.1 46 63.0
Aa31LG2G11220 Aethionema arabicum HOM05D004289 ORTHO05D005141 3.6e-07 59.3 37 70.3
Oeu058640.2 Olea europaea HOM05D004289 ORTHO05D005141 3.6e-07 59.3 71 47.9
FAN08G1828 Fragaria x ananassa HOM05D004289 ORTHO05D206118 4.7e-07 58.9 27 100.0
SEGI_28610 Sequoiadendron giganteum HOM05D004061 ORTHO05D004693 4.7e-07 58.9 61 39.3
VMungo0540G0867 Vigna mungo HOM05D004289 ORTHO05D005141 1.8e-06 57.0 46 54.3
Os05g0419600 Oryza sativa ssp. japonica HOM05D004289 ORTHO05D005141 4.0e-06 55.8 63 46.0
QL02p100957 Quercus lobata HOM05D004289 ORTHO05D005141 4.0e-06 55.8 100 39.0


User provided reference genes

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