Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G1575 Fragaria x ananassa HOM05D004296 ORTHO05D005045 9.3e-156 553.5 283 100.0
FvH4_5g02380 Fragaria vesca HOM05D004296 ORTHO05D005045 5.3e-135 484.6 283 88.3
RcHm_v2.0_Chr7g0197731 Rosa chinensis HOM05D004296 ORTHO05D005045 2.2e-120 436.0 283 79.9
FAN07G0166 Fragaria x ananassa HOM05D004296 ORTHO05D005045 2.6e-118 429.1 283 78.8
FAN08G1593 Fragaria x ananassa HOM05D004296 ORTHO05D005045 2.6e-118 429.1 283 80.6
FAN12G3540 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.4e-114 416.8 283 78.1
FAN12G1413 Fragaria x ananassa HOM05D004296 ORTHO05D005045 3.6e-99 365.5 279 71.0
FAN17G1800 Fragaria x ananassa HOM05D004296 ORTHO05D005045 2.3e-98 362.8 282 69.9
FvH4_4g36830 Fragaria vesca HOM05D004296 ORTHO05D005045 3.4e-97 359.0 277 69.7
FAN07G0122 Fragaria x ananassa HOM05D004296 ORTHO05D005045 2.8e-91 339.3 281 66.9
Cfa013198 Carpinus fangiana HOM05D004296 ORTHO05D005045 2.1e-67 260.0 281 51.6
Haze_22818 Corylus avellana HOM05D004296 ORTHO05D005045 5.2e-66 255.4 278 51.8
Prupe.5G099900 Prunus persica HOM05D004296 ORTHO05D005045 2.9e-64 249.6 369 43.1
QL12p012797 Quercus lobata HOM05D004296 ORTHO05D005045 6.4e-64 248.4 279 50.2
CSS0030285 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 3.0e-61 239.6 286 49.0
Duzib068G1191 Durio zibethinus HOM05D004296 ORTHO05D005045 2.5e-60 236.5 281 48.8
MD07G1059600 Malus domestica HOM05D004296 ORTHO05D005045 2.6e-57 226.5 294 50.0
CSS0003782 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 3.4e-57 226.1 286 46.9
Dinv38945 Davidia involucrata HOM05D004296 ORTHO05D005045 7.6e-57 224.9 285 45.3
Thecc.03G278500 Theobroma cacao HOM05D004296 ORTHO05D005045 1.7e-56 223.8 280 47.5
CiPaw.08G074700 Carya illinoinensis HOM05D004296 ORTHO05D005045 2.2e-56 223.4 302 43.4
Manes.01G061800 Manihot esculenta HOM05D004296 ORTHO05D005045 2.2e-56 223.4 281 46.3
TAR375G1065 Trochodendron aralioides HOM05D004296 ORTHO05D005045 3.8e-56 222.6 285 45.3
Rhsim02G0231000 Rhododendron simsii HOM05D004296 ORTHO05D005045 1.1e-55 221.1 290 44.5
FAN13G2230 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.9e-55 220.3 122 88.5
Eucgr.D01846 Eucalyptus grandis HOM05D004296 ORTHO05D005045 1.6e-54 217.2 279 46.6
Hma1.2p1_0896F.1_g234000 Hydrangea macrophylla HOM05D004296 ORTHO05D005045 2.1e-54 216.9 286 43.0
TAR268G0002 Trochodendron aralioides HOM05D004296 ORTHO05D005045 2.7e-54 216.5 284 44.0
Nn1g01503 Nelumbo nucifera HOM05D004296 ORTHO05D005045 3.5e-54 216.1 286 46.2
Atru.chr9.2192 Acer truncatum HOM05D004296 ORTHO05D005045 4.6e-54 215.7 283 47.0
COL.COLO4_34461 Corchorus olitorius HOM05D001502 ORTHO05D002950 2.3e-53 213.4 265 47.9
TWI36G1592 Tripterygium wilfordii HOM05D004296 ORTHO05D005045 1.9e-52 210.3 283 45.6
CSS0037206 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 3.6e-51 206.1 265 46.8
Cpa.g.sc45.44 Carica papaya HOM05D004296 ORTHO05D005045 8.1e-51 204.9 283 45.6
TWI18G1338 Tripterygium wilfordii HOM05D004296 ORTHO05D005045 1.4e-50 204.1 281 45.6
Cc10_g03910 Coffea canephora HOM05D004296 ORTHO05D005045 2.4e-50 203.4 261 45.2
DCAR_000614 Daucus carota HOM05D004296 ORTHO05D005045 5.2e-50 202.2 292 42.8
QL05p087372 Quercus lobata HOM05D004296 ORTHO05D005045 6.9e-50 201.8 292 44.2
MD14G1104200 Malus domestica HOM05D004296 ORTHO05D005045 1.2e-49 201.1 285 46.3
Medtr0768s0010 Medicago truncatula HOM05D004296 ORTHO05D005045 1.5e-49 200.7 273 41.4
MSTRG.11985 Avicennia marina HOM05D004296 ORTHO05D005045 1.7e-48 197.2 286 43.0
SalBow1G8718 Salvia bowleyana HOM05D004296 ORTHO05D005045 2.2e-48 196.8 286 42.0
Glyma.01G220000 Glycine max HOM05D004296 ORTHO05D005045 2.9e-48 196.4 280 42.5
MSTRG.11987 Avicennia marina HOM05D004296 ORTHO05D005045 3.8e-48 196.1 286 42.7
Gohir.D05G298900 Gossypium hirsutum HOM05D004296 ORTHO05D005045 4.9e-48 195.7 268 42.9
TPR.G3981 Trifolium pratense HOM05D004296 ORTHO05D005045 6.4e-48 195.3 273 43.2
Gohir.A05G299133 Gossypium hirsutum HOM05D004296 ORTHO05D005045 1.1e-47 194.5 268 42.9
Actinidia02008 Actinidia chinensis HOM05D004296 ORTHO05D005045 1.4e-47 194.1 285 42.1
MELO3C016352.2 Cucumis melo HOM05D004296 ORTHO05D005045 1.9e-47 193.7 325 40.0
Gorai.009G316100 Gossypium raimondii HOM05D004296 ORTHO05D005045 1.9e-47 193.7 268 43.7
SGA_v2.0_scaffold96G28938 Striga asiatica HOM05D004296 ORTHO05D005045 1.9e-47 193.7 283 41.0
Sc01g0009550 Simmondsia chinensis HOM05D004296 ORTHO05D005045 2.4e-47 193.4 283 41.7
Glyma.20G061500 Glycine max HOM05D004296 ORTHO05D005045 3.2e-47 193.0 280 43.2
Medtr6g011320 Medicago truncatula HOM05D004296 ORTHO05D005045 7.1e-47 191.8 273 42.1
Peaxi162Scf00119g00828 Petunia axillaris HOM05D004296 ORTHO05D005045 7.1e-47 191.8 319 37.3
CsaV3_4G005960 Cucumis sativus L. HOM05D004296 ORTHO05D005045 9.3e-47 191.4 322 39.8
Oeu009155.1 Olea europaea HOM05D004296 ORTHO05D005045 1.2e-46 191.0 289 38.8
PGR031G2604 Punica granatum HOM05D004296 ORTHO05D005045 7.8e-46 188.3 274 44.2
HanXRQChr03g0086721 Helianthus annuus HOM05D004296 ORTHO05D005045 1.0e-45 188.0 282 40.1
Ciclev10002111m.g Citrus clementina HOM05D004296 ORTHO05D005045 2.3e-45 186.8 285 42.1
PSO782G5383 Papaver somniferum HOM05D004296 ORTHO05D005045 3.0e-45 186.4 297 41.1
Migut.A00767 Erythranthe guttata HOM05D004296 ORTHO05D005045 3.9e-45 186.0 288 41.7
HanXRQChr03g0086731 Helianthus annuus HOM05D004296 ORTHO05D005045 1.1e-44 184.5 283 40.6
CAN.G774.35 Capsicum annuum HOM05D004296 ORTHO05D005045 2.5e-44 183.3 300 39.7
ClCG07G008080 Citrullus lanatus HOM05D004296 ORTHO05D005045 2.5e-44 183.3 289 40.8
FAN18G3255 Fragaria x ananassa HOM05D004296 ORTHO05D005045 2.5e-44 183.3 91 95.6
Nitab4.5_0001615g0200 Nicotiana tabacum HOM05D004296 ORTHO05D005045 1.3e-43 181.0 310 38.7
Peaxi162Scf00014g00082 Petunia axillaris HOM05D004296 ORTHO05D005045 1.6e-43 180.6 293 38.2
MBI18_g42175_MAGBIO Magnolia biondii HOM05D004296 ORTHO05D005045 2.1e-43 180.3 287 40.8
Phvul.002G157700 Phaseolus vulgaris HOM05D004296 ORTHO05D005045 2.1e-43 180.3 281 39.9
Nitab4.5_0011683g0020 Nicotiana tabacum HOM05D004296 ORTHO05D005045 2.8e-43 179.9 315 36.5
Oeu020615.1 Olea europaea HOM05D004296 ORTHO05D005045 3.6e-43 179.5 315 36.5
Phvul.005G126900 Phaseolus vulgaris HOM05D004296 ORTHO05D005045 3.6e-43 179.5 279 37.6
Aqoxy3G03757 Aquilegia oxysepala HOM05D004296 ORTHO05D005045 4.8e-43 179.1 289 39.8
FvH4_4g24221 Fragaria vesca HOM05D004296 ORTHO05D005045 6.2e-43 178.7 153 69.3
LjContig00312_ERROPOS870357g0005117 Lotus japonicus HOM05D004296 ORTHO05D005045 8.1e-43 178.3 281 40.9
Lalb_Chr20g0109121 Lupinus albus HOM05D004296 ORTHO05D005045 8.1e-43 178.3 273 39.6
Lj8C228T3 Lonicera japonica HOM05D004296 ORTHO05D005045 1.1e-42 177.9 347 35.2
Ah.12g054620 Amaranthus hybridus HOM05D004296 ORTHO05D005045 1.4e-42 177.6 301 40.2
TPR.G4254 Trifolium pratense HOM05D004296 ORTHO05D005045 1.4e-42 177.6 253 40.3
PSO478G0046 Papaver somniferum HOM05D004296 ORTHO05D005045 1.2e-41 174.5 301 40.2
Sopen04g002480 Solanum pennellii HOM05D004296 ORTHO05D005045 1.2e-41 174.5 350 34.0
AUR62007249 Chenopodium quinoa HOM05D004296 ORTHO05D005045 2.6e-41 173.3 313 38.7
Hund05589 Selenicereus undatus HOM05D004296 ORTHO05D005045 2.6e-41 173.3 273 42.5
Psat7g254600 Pisum sativum HOM05D004296 ORTHO05D005045 3.4e-41 172.9 222 42.8
PGSC0003DMG403005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 3.4e-41 172.9 352 33.5
Solyc08g081040.3 Solanum lycopersicum HOM05D004296 ORTHO05D005045 1.7e-40 170.6 351 34.2
EL10Ac8g19045 Beta vulgaris HOM05D004296 ORTHO05D005045 2.2e-40 170.2 281 40.9
PGSC0003DMG400012342 Solanum tuberosum HOM05D004296 ORTHO05D005045 2.9e-40 169.9 327 34.3
Lj2A555T5 Lonicera japonica HOM05D004296 ORTHO05D005045 3.8e-40 169.5 360 33.1
Lj8A231T11 Lonicera japonica HOM05D004296 ORTHO05D005045 6.4e-40 168.7 369 33.9
Lsat_1_v5_gn_5_92680 Lactuca sativa HOM05D004296 ORTHO05D005045 1.4e-39 167.5 271 37.6
VMungo1080G1277 Vigna mungo HOM05D004296 ORTHO05D005045 1.4e-39 167.5 279 36.2
Potri.003G127200 Populus trichocarpa HOM05D004296 ORTHO05D005045 3.2e-39 166.4 314 36.0
C04p48320 Brassica napus HOM05D004296 ORTHO05D005045 5.4e-39 165.6 279 39.1
Lsat_1_v5_gn_6_87401 Lactuca sativa HOM05D004296 ORTHO05D005045 7.1e-39 165.2 271 38.0
Actinidia14560 Actinidia chinensis HOM05D004296 ORTHO05D005045 1.2e-38 164.5 285 38.6
arahy.Tifrunner.gnm1.ann1.SKNY54 Arachis hypogaea HOM05D004296 ORTHO05D005045 4.6e-38 162.5 268 37.3
Carub.0007s3425 Capsella rubella HOM05D004296 ORTHO05D005045 4.6e-38 162.5 285 39.6
Sed0022715 Sechium edule HOM05D004296 ORTHO05D005045 1.0e-37 161.4 366 33.6
BcaC02g08973 Brassica carinata HOM05D004296 ORTHO05D005045 3.9e-37 159.5 280 37.9
BolC4t26425H Brassica oleracea HOM05D004296 ORTHO05D005045 3.9e-37 159.5 280 37.9
Sopen08g029360 Solanum pennellii HOM05D004296 ORTHO05D005045 3.9e-37 159.5 374 31.3
SalBow7G4152 Salvia bowleyana HOM05D004296 ORTHO05D005045 5.1e-37 159.1 230 42.2
CSS0027171 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 5.6e-36 155.6 137 57.7
Sp7g00660 Schrenkiella parvula HOM05D004296 ORTHO05D005045 5.6e-36 155.6 279 39.8
SpUn0010_0140 Schrenkiella parvula HOM05D004296 ORTHO05D005045 5.6e-36 155.6 279 39.8
unitig_32.g11599 Utricularia gibba HOM05D004296 ORTHO05D005045 9.6e-36 154.8 282 37.9
arahy.Tifrunner.gnm1.ann1.KQ253K Arachis hypogaea HOM05D004296 ORTHO05D005045 1.6e-35 154.1 273 37.4
Hund17074 Selenicereus undatus HOM05D004296 ORTHO05D005045 2.8e-35 153.3 276 38.8
Psat0s5346g0040 Pisum sativum HOM05D002378 ORTHO05D002936 3.7e-35 152.9 219 42.9
Thhalv10028247m.g Eutrema salsugineum HOM05D004296 ORTHO05D005045 4.8e-35 152.5 283 35.3
Psat1g061240 Pisum sativum HOM05D004296 ORTHO05D005045 4.8e-35 152.5 125 53.6
CSS0028138 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 6.2e-35 152.1 137 56.2
Haze_21601 Corylus avellana HOM05D004296 ORTHO05D005045 8.1e-35 151.8 232 42.2
THA.LOC104809392 Tarenaya hassleriana HOM05D004296 ORTHO05D005045 1.1e-34 151.4 276 37.3
Cpa.g.sc39.99 Carica papaya HOM05D004296 ORTHO05D005045 2.4e-34 150.2 132 56.8
PGSC0003DMG401005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 4.0e-34 149.4 141 51.8
Aqoxy3G00118 Aquilegia oxysepala HOM05D004296 ORTHO05D005045 7.6e-33 145.2 286 35.0
AT5G41270 Arabidopsis thaliana HOM05D004296 ORTHO05D005045 1.7e-32 144.1 289 37.7
Rhsim02G0230400 Rhododendron simsii HOM05D004296 ORTHO05D005045 1.7e-32 144.1 276 36.2
AL7G48180 Arabidopsis lyrata HOM05D004296 ORTHO05D005045 2.9e-32 143.3 263 39.5
ECA240G3612 Erigeron canadensis HOM05D004296 ORTHO05D005045 2.9e-32 143.3 330 33.6
arahy.Tifrunner.gnm1.ann1.CEX2YD Arachis hypogaea HOM05D004296 ORTHO05D005045 6.4e-32 142.1 190 41.1
BcaB06g27609 Brassica carinata HOM05D004296 ORTHO05D005045 6.4e-32 142.1 242 38.8
Rhsim02G0230900 Rhododendron simsii HOM05D004296 ORTHO05D005045 8.4e-32 141.7 196 45.9
PSO210G3801 Papaver somniferum HOM05D004296 ORTHO05D005045 1.1e-31 141.4 157 46.5
Solyc04g007420.4 Solanum lycopersicum HOM05D004296 ORTHO05D005045 1.9e-31 140.6 317 32.2
HPP92_021782 Vanilla planifolia HOM05D004296 ORTHO05D005045 2.4e-31 140.2 267 35.6
BraA04t17088Z Brassica rapa HOM05D004296 ORTHO05D005045 3.2e-31 139.8 231 39.4
CDE01G0178 Ceratophyllum demersum HOM05D004296 ORTHO05D005045 5.5e-31 139.0 280 34.6
CDE04G2006 Ceratophyllum demersum HOM05D004296 ORTHO05D005045 5.5e-31 139.0 264 35.2
CARHR213060 Cardamine hirsuta HOM05D004296 ORTHO05D005045 1.2e-30 137.9 290 34.8
A04p14410 Brassica napus HOM05D004296 ORTHO05D005045 3.5e-30 136.3 231 39.0
SHI24854 Sapria himalayana HOM05D004296 ORTHO05D005045 6.0e-30 135.6 140 51.4
Aa31LG9G640 Aethionema arabicum HOM05D004296 ORTHO05D005045 3.9e-29 132.9 249 39.4
Carub.0001s0729 Capsella rubella HOM05D004296 ORTHO05D005045 3.9e-29 132.9 274 35.4
Thhalv10027895m.g Eutrema salsugineum HOM05D004296 ORTHO05D005045 3.3e-28 129.8 283 33.2
arahy.Tifrunner.gnm1.ann1.W3QJXS Arachis hypogaea HOM05D004296 ORTHO05D005045 4.3e-28 129.4 253 35.2
Sed0002821 Sechium edule HOM05D004296 ORTHO05D005045 9.6e-28 128.3 290 34.8
AUR62018749 Chenopodium quinoa HOM05D004296 ORTHO05D005045 1.1e-26 124.8 316 33.9
Lalb_Chr09g0320981 Lupinus albus HOM05D004296 ORTHO05D005045 1.1e-26 124.8 144 43.1
ATR0680G148 Amborella trichopoda HOM05D004296 ORTHO05D005045 4.0e-26 122.9 276 32.2
PSO210G3847 Papaver somniferum HOM05D004296 ORTHO05D005045 6.9e-26 122.1 257 33.5
SEGI_21744 Sequoiadendron giganteum HOM05D004296 ORTHO05D005045 2.6e-25 120.2 259 34.4
Zm00001eb162950 Zea mays HOM05D004296 ORTHO05D005045 1.7e-24 117.5 317 29.7
CAN.G1069.19 Capsicum annuum HOM05D004296 ORTHO05D005045 4.9e-24 115.9 120 51.7
Os01g0541600 Oryza sativa ssp. japonica HOM05D004296 ORTHO05D005045 3.2e-23 113.2 232 31.9
Sabra01G0078900 Salix brachista HOM05D004296 ORTHO05D005045 2.7e-22 110.2 255 34.1
Mapoly0057s0058 Marchantia polymorpha HOM05D004296 ORTHO05D005045 3.4e-17 93.2 264 30.7
Nitab4.5_0003441g0080 Nicotiana tabacum HOM05D004296 ORTHO05D005045 2.2e-16 90.5 219 32.0
Os01g0531000 Oryza sativa ssp. japonica HOM05D004296 ORTHO05D005045 1.8e-13 80.9 136 33.8
Oeu009158.1 Olea europaea HOM05D004296 ORTHO05D005045 7.4e-12 75.5 114 41.2
PGSC0003DMG402005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 2.2e-11 73.9 61 52.5
ATR0680G137 Amborella trichopoda HOM05D004296 ORTHO05D005045 4.8e-11 72.8 57 59.6
Pp3c22_14200 Physcomitrium patens HOM05D004296 ORTHO05D005045 4.8e-11 72.8 150 35.3
Cfa014102 Carpinus fangiana HOM05D004296 ORTHO05D005045 1.8e-10 70.9 54 55.6
AagrBONN_evm.TU.Sc2ySwM_228.2126 Anthoceros agrestis HOM05D004296 ORTHO05D005045 1.4e-07 61.2 152 30.9
Mapoly0057s0052 Marchantia polymorpha HOM05D004296 ORTHO05D005045 1.4e-07 61.2 147 29.3
Cpa.g.sc39.98 Carica papaya HOM05D004296 ORTHO05D005045 4.2e-07 59.7 79 41.8
AagrBONN_evm.TU.Sc2ySwM_368.2814 Anthoceros agrestis HOM05D004296 ORTHO05D005045 2.7e-06 57.0 125 28.8
Nitab4.5_0001315g0090 Nicotiana tabacum HOM05D004296 ORTHO05D005045 2.7e-06 57.0 83 39.8


User provided reference genes

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