Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G1557 Fragaria x ananassa HOM05D006075 ORTHO05D007527 8.0e-269 929.9 474 100.0
FAN18G0544 Fragaria x ananassa HOM05D006075 ORTHO05D007527 6.1e-261 903.7 474 97.5
FAN08G0877 Fragaria x ananassa HOM05D006075 ORTHO05D007527 1.8e-260 902.1 474 97.3
RcHm_v2.0_Chr7g0199111 Rosa chinensis HOM05D006075 ORTHO05D007527 6.6e-247 857.1 475 93.1
FvH4_5g01570 Fragaria vesca HOM05D006075 ORTHO05D007527 3.9e-231 804.7 423 96.9
Prupe.5G091900 Prunus persica HOM05D006075 ORTHO05D007527 1.4e-225 786.2 475 84.8
MD06G1073700 Malus domestica HOM05D006075 ORTHO05D007527 1.4e-217 759.6 475 82.1
FAN13G2280 Fragaria x ananassa HOM05D006075 ORTHO05D007527 2.6e-211 738.8 386 97.4
FAN08G0114 Fragaria x ananassa HOM05D006075 ORTHO05D007527 5.8e-211 737.6 412 93.2
MD04G1066500 Malus domestica HOM05D006075 ORTHO05D007527 1.5e-206 723.0 443 82.8
QL12p017421 Quercus lobata HOM05D006075 ORTHO05D007527 1.6e-200 703.0 472 75.4
CANSAT21G0515 Cannabis sativa HOM05D006075 ORTHO05D007527 1.5e-198 696.4 466 76.6
CiPaw.11G140500 Carya illinoinensis HOM05D006075 ORTHO05D007527 2.4e-196 689.1 475 74.7
Ciclev10019953m.g Citrus clementina HOM05D006075 ORTHO05D007527 1.0e-194 683.7 475 74.1
Atru.chr9.1549 Acer truncatum HOM05D006075 ORTHO05D007527 4.2e-193 678.3 469 74.4
Potri.001G109200 Populus trichocarpa HOM05D006075 ORTHO05D007527 1.6e-192 676.4 466 73.4
Glyma.17G131000 Glycine max HOM05D006075 ORTHO05D007527 2.3e-191 672.5 466 73.4
TWI81G0173 Tripterygium wilfordii HOM05D006075 ORTHO05D007527 2.3e-191 672.5 465 74.6
Lj4g0025720 Lotus japonicus HOM05D006075 ORTHO05D007527 6.7e-191 671.0 466 72.7
Thecc.02G127300 Theobroma cacao HOM05D006075 ORTHO05D007527 6.7e-191 671.0 475 72.8
Gohir.A01G010200 Gossypium hirsutum HOM05D006075 ORTHO05D007527 8.7e-191 670.6 460 74.6
Medtr4g102820 Medicago truncatula HOM05D006075 ORTHO05D007527 2.8e-189 665.6 470 71.7
Manes.01G066100 Manihot esculenta HOM05D006075 ORTHO05D007527 1.1e-188 663.7 475 71.6
Eucgr.E00536 Eucalyptus grandis HOM05D006075 ORTHO05D007527 1.8e-188 662.9 462 74.0
Gorai.002G011900 Gossypium raimondii HOM05D006075 ORTHO05D007527 1.8e-188 662.9 460 73.9
TPR.G19222 Trifolium pratense HOM05D006075 ORTHO05D007527 1.8e-188 662.9 470 71.3
Dinv37681 Davidia involucrata HOM05D006075 ORTHO05D007527 9.0e-188 660.6 469 72.7
Phvul.003G211900 Phaseolus vulgaris HOM05D006075 ORTHO05D007527 1.7e-186 656.4 466 72.3
Sabra01G0082500 Salix brachista HOM05D006075 ORTHO05D007527 2.9e-186 655.6 505 67.5
TPR.G23260 Trifolium pratense HOM05D006075 ORTHO05D007527 5.0e-186 654.8 469 70.4
Gohir.D01G009800 Gossypium hirsutum HOM05D006075 ORTHO05D007527 6.5e-186 654.4 470 72.3
GSVIVG01019817001 Vitis vinifera HOM05D006075 ORTHO05D007527 8.5e-186 654.1 455 73.6
Nn6g34229 Nelumbo nucifera HOM05D006075 ORTHO05D007527 5.5e-185 651.4 465 71.8
Psat4g067760 Pisum sativum HOM05D006075 ORTHO05D007527 2.1e-184 649.4 473 69.3
Rhsim07G0094000 Rhododendron simsii HOM05D006075 ORTHO05D007527 1.3e-183 646.7 488 70.1
Psat1g082240 Pisum sativum HOM05D006075 ORTHO05D007527 5.7e-182 641.3 473 68.3
MELO3C005634.2 Cucumis melo HOM05D006075 ORTHO05D007527 2.2e-181 639.4 469 71.2
CsaV3_5G003210 Cucumis sativus L. HOM05D006075 ORTHO05D007527 3.7e-181 638.6 469 71.4
CSS0042428 Camellia sinensis var. sinensis HOM05D006075 ORTHO05D007527 1.4e-180 636.7 454 72.7
Oeu011664.1 Olea europaea HOM05D006075 ORTHO05D007527 2.4e-180 636.0 465 71.2
Lalb_Chr09g0333281 Lupinus albus HOM05D006075 ORTHO05D007527 4.1e-180 635.2 462 70.6
arahy.Tifrunner.gnm1.ann1.M2EVQD Arachis hypogaea HOM05D006075 ORTHO05D007527 1.2e-179 633.6 467 69.4
Lalb_Chr16g0389751 Lupinus albus HOM05D006075 ORTHO05D007527 1.5e-179 633.3 461 70.7
Lj2A193G48 Lonicera japonica HOM05D006075 ORTHO05D007527 1.4e-177 626.7 437 74.1
Sed0007766 Sechium edule HOM05D006075 ORTHO05D007527 4.2e-177 625.2 460 71.3
Sopen08g028750 Solanum pennellii HOM05D006075 ORTHO05D007527 9.4e-177 624.0 463 69.1
PSO478G2556 Papaver somniferum HOM05D006075 ORTHO05D007527 2.7e-176 622.5 469 68.2
CAN.G981.23 Capsicum annuum HOM05D006075 ORTHO05D007527 6.1e-176 621.3 461 69.0
Solyc08g080420.4 Solanum lycopersicum HOM05D006075 ORTHO05D007527 1.4e-175 620.2 463 68.7
PSO782G2103 Papaver somniferum HOM05D006075 ORTHO05D007527 3.9e-175 618.6 469 68.0
HanXRQChr03g0085661 Helianthus annuus HOM05D006075 ORTHO05D007527 8.8e-175 617.5 463 70.4
THA.LOC104818186 Tarenaya hassleriana HOM05D006075 ORTHO05D007527 2.2e-173 612.8 467 69.0
Cc08_g14070 Coffea canephora HOM05D006075 ORTHO05D007527 4.8e-173 611.7 452 70.4
MSTRG.13821 Avicennia marina HOM05D006075 ORTHO05D007527 6.3e-173 611.3 464 67.2
arahy.Tifrunner.gnm1.ann1.S8HR28 Arachis hypogaea HOM05D006075 ORTHO05D007527 5.3e-172 608.2 467 67.9
Sp2g01480 Schrenkiella parvula HOM05D006075 ORTHO05D007527 1.0e-170 604.0 453 70.0
Migut.E01290 Erythranthe guttata HOM05D006075 ORTHO05D007527 1.3e-170 603.6 470 67.4
ECA240G3011 Erigeron canadensis HOM05D006075 ORTHO05D007527 2.9e-170 602.4 467 67.5
Carub.0002s0185 Capsella rubella HOM05D006075 ORTHO05D007527 5.0e-170 601.7 464 67.9
Thhalv10023435m.g Eutrema salsugineum HOM05D006075 ORTHO05D007527 1.9e-169 599.7 464 67.2
AL2G12410 Arabidopsis lyrata HOM05D006075 ORTHO05D007527 3.2e-169 599.0 466 67.6
AT1G63110 Arabidopsis thaliana HOM05D006075 ORTHO05D007527 2.1e-168 596.3 465 67.3
VMungo1215G1399 Vigna mungo HOM05D006075 ORTHO05D007527 7.9e-168 594.3 422 72.3
Aa31LG2G590 Aethionema arabicum HOM05D006075 ORTHO05D007527 6.7e-167 591.3 490 64.7
BcaB07g31383 Brassica carinata HOM05D006075 ORTHO05D007527 4.4e-166 588.6 464 66.2
BcaC04g22472 Brassica carinata HOM05D006075 ORTHO05D007527 4.4e-166 588.6 460 67.2
A09p15680 Brassica napus HOM05D006075 ORTHO05D007527 7.0e-164 581.3 465 67.3
BraA09t37209Z Brassica rapa HOM05D006075 ORTHO05D007527 7.0e-164 581.3 465 67.3
C09p18910 Brassica napus HOM05D006075 ORTHO05D007527 9.1e-164 580.9 462 66.9
PGR042G3166 Punica granatum HOM05D006075 ORTHO05D007527 5.9e-163 578.2 477 65.2
Os02g0688900 Oryza sativa ssp. japonica HOM05D006075 ORTHO05D007527 1.3e-157 560.5 455 64.4
BolC9t54793H Brassica oleracea HOM05D006075 ORTHO05D007527 1.7e-157 560.1 465 65.4
Lsat_1_v5_gn_6_87521 Lactuca sativa HOM05D006075 ORTHO05D007527 3.7e-157 558.9 446 66.8
Actinidia05225 Actinidia chinensis HOM05D006075 ORTHO05D007527 8.2e-157 557.8 467 64.2
AT1G12730 Arabidopsis thaliana HOM05D006075 ORTHO05D007527 2.4e-156 556.2 466 61.8
EL10Ac5g12736 Beta vulgaris HOM05D006075 ORTHO05D007527 3.5e-155 552.4 442 64.9
SalBow1G6580 Salvia bowleyana HOM05D006075 ORTHO05D007527 7.7e-155 551.2 567 54.3
HPP92_001310 Vanilla planifolia HOM05D006075 ORTHO05D007527 5.0e-154 548.5 449 62.4
Peaxi162Scf00714g00528 Petunia axillaris HOM05D006075 ORTHO05D007527 2.3e-151 539.7 535 56.6
SGA_v2.0_scaffold385G50455 Striga asiatica HOM05D006075 ORTHO05D007527 1.5e-150 537.0 465 61.9
CDE11G0531 Ceratophyllum demersum HOM05D006075 ORTHO05D007527 2.0e-150 536.6 451 62.7
Carub.0001s1243 Capsella rubella HOM05D006075 ORTHO05D007527 4.4e-150 535.4 456 61.8
TAR629G3145 Trochodendron aralioides HOM05D006075 ORTHO05D007527 4.5e-147 525.4 369 72.6
ClCG01G003090 Citrullus lanatus HOM05D006075 ORTHO05D007527 4.2e-145 518.8 471 62.0
vmacro13924 Vaccinium macrocarpon HOM05D006075 ORTHO05D007527 6.1e-144 515.0 462 62.1
HanXRQChr11g0323321 Helianthus annuus HOM05D006075 ORTHO05D007527 4.4e-142 508.8 464 61.2
SEGI_27555 Sequoiadendron giganteum HOM05D006075 ORTHO05D007527 1.8e-140 503.4 464 56.7
Manes.02G026900 Manihot esculenta HOM05D006075 ORTHO05D007527 1.1e-137 494.2 521 55.5
COL.COLO4_32412 Corchorus olitorius HOM05D006075 ORTHO05D007527 1.9e-137 493.4 494 57.3
AL1G24320 Arabidopsis lyrata HOM05D006075 ORTHO05D007527 9.5e-137 491.1 454 59.0
Duzib052G1148 Durio zibethinus HOM05D006075 ORTHO05D007527 1.4e-135 487.3 460 59.1
TAR629G0535 Trochodendron aralioides HOM05D006075 ORTHO05D007527 3.0e-135 486.1 342 73.7
Nitab4.5_0002853g0070 Nicotiana tabacum HOM05D006075 ORTHO05D007527 3.3e-129 466.1 503 53.9
Nitab4.5_0016932g0010 Nicotiana tabacum HOM05D006075 ORTHO05D007527 8.9e-127 458.0 467 55.2
unitig_744.g24646 Utricularia gibba HOM05D006075 ORTHO05D007527 1.7e-125 453.8 464 55.2
PSO478G1113 Papaver somniferum HOM05D006075 ORTHO05D007527 4.1e-124 449.1 320 72.2
Sc01g0008740 Simmondsia chinensis HOM05D006075 ORTHO05D007527 1.3e-122 444.1 358 65.9
Glyma.05G049100 Glycine max HOM05D006075 ORTHO05D007527 4.0e-119 432.6 354 65.0
PGSC0003DMG400003033 Solanum tuberosum HOM05D006075 ORTHO05D007527 5.4e-116 422.2 443 53.3
CARHR013020 Cardamine hirsuta HOM05D006075 ORTHO05D007527 6.2e-112 408.7 365 58.6
ATR0322G053 Amborella trichopoda HOM05D006075 ORTHO05D007527 1.5e-110 404.1 327 64.2
Haze_08940 Corylus avellana HOM05D006075 ORTHO05D007527 2.2e-109 400.2 281 74.4
Pp3c9_23740 Physcomitrium patens HOM05D006075 ORTHO05D007527 3.8e-109 399.4 466 48.9
Mapoly0001s0316 Marchantia polymorpha HOM05D006075 ORTHO05D007527 1.7e-106 390.6 468 47.4
Ah.12g057560 Amaranthus hybridus HOM05D006075 ORTHO05D007527 1.7e-101 374.0 444 50.9
SMO270G0127 Selaginella moellendorffii HOM05D006075 ORTHO05D007527 2.2e-101 373.6 480 45.4
CARHR048400 Cardamine hirsuta HOM05D006075 ORTHO05D007527 6.0e-99 365.5 309 62.8
Sed0016840 Sechium edule HOM05D006075 ORTHO05D007527 2.3e-98 363.6 271 70.5
Hund14727 Selenicereus undatus HOM05D006075 ORTHO05D007527 4.8e-96 355.9 462 49.1
Zm00001eb251050 Zea mays HOM05D006075 ORTHO05D007527 5.6e-89 332.4 306 57.2
Cpa.g.sc74.79 Carica papaya HOM05D006075 ORTHO05D007527 7.1e-84 315.5 301 55.5
Dinv39003 Davidia involucrata HOM05D006075 ORTHO05D007527 7.9e-75 285.4 286 56.3
AagrBONN_evm.TU.Sc2ySwM_117.1004 Anthoceros agrestis HOM05D006075 ORTHO05D007527 1.4e-71 274.6 367 45.2
Os01g0870201 Oryza sativa ssp. japonica HOM05D006075 ORTHO05D007527 1.2e-67 261.5 459 38.8
CBR_g17923 Chara braunii HOM05D006075 ORTHO05D007527 2.4e-63 247.3 759 27.7
CSS0009197 Camellia sinensis var. sinensis HOM05D006075 ORTHO05D007527 2.1e-59 234.2 415 39.8
Ca_20251_v3 Cicer arietinum L. HOM05D006075 ORTHO05D007527 2.8e-56 223.8 164 68.9
TAR636G1294 Trochodendron aralioides HOM05D006075 ORTHO05D007527 4.8e-48 196.4 169 62.7
AUR62017286 Chenopodium quinoa HOM05D006075 ORTHO05D007527 1.2e-46 191.8 185 59.5
AUR62010644 Chenopodium quinoa HOM05D006075 ORTHO05D007527 8.5e-37 159.1 186 50.5
MCO15G123 Micromonas commoda HOM05D006075 ORTHO05D007527 7.5e-33 146.0 449 29.2
C09p15950 Brassica napus HOM05D006075 ORTHO05D007527 5.5e-28 129.8 91 70.3
PRCOL_00005762 Prasinoderma coloniale HOM05D006075 ORTHO05D007527 6.1e-27 126.3 516 25.8
Eucgr.H02816 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.8e-26 124.8 76 76.3
TAR636G2798 Trochodendron aralioides HOM05D006075 ORTHO05D007527 8.9e-26 122.5 67 86.6
ATR0322G060 Amborella trichopoda HOM05D006075 ORTHO05D007527 1.7e-24 118.2 85 67.1
BolC9t54506H Brassica oleracea HOM05D006075 ORTHO05D007527 4.5e-22 110.2 108 57.4
Actinidia27405 Actinidia chinensis HOM05D006075 ORTHO05D007527 1.1e-12 79.0 63 65.1
Cre03.g150400 Chlamydomonas reinhardtii HOM05D006075 ORTHO05D007527 1.1e-12 79.0 225 30.7
Pp3c15_22645 Physcomitrium patens HOM05D006075 ORTHO05D007527 1.4e-10 72.0 111 41.4
Lsat_1_v5_gn_5_145360 Lactuca sativa HOM05D000561 ORTHO05D008162 2.9e-08 64.3 70 48.6
SalBow6G7131 Salvia bowleyana HOM05D004598 ORTHO05D005550 1.9e-07 61.6 310 27.1
SalBow2G2153 Salvia bowleyana HOM05D004598 ORTHO05D005550 1.6e-06 58.5 310 27.1
PSO675G4488 Papaver somniferum HOM05D004598 ORTHO05D005550 7.8e-06 56.2 265 26.4


User provided reference genes

Program Settings