Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G1519 Fragaria x ananassa HOM05D007573 ORTHO05D009938 2.8e-25 117.9 61 100.0
FAN18G1355 Fragaria x ananassa HOM05D007573 ORTHO05D009938 2.8e-25 117.9 61 100.0
FAN18G3111 Fragaria x ananassa HOM05D007573 ORTHO05D009938 2.8e-25 117.9 61 100.0
RcHm_v2.0_Chr5g0034341 Rosa chinensis HOM05D007573 ORTHO05D009938 1.7e-22 108.6 61 91.8
Manes.03G112266 Manihot esculenta HOM05D007573 ORTHO05D009938 1.9e-18 95.1 56 82.1
Prupe.4G184300 Prunus persica HOM05D007573 ORTHO05D009938 1.9e-18 95.1 56 82.1
CANSAT54G1030 Cannabis sativa HOM05D007573 ORTHO05D009938 9.7e-18 92.8 56 82.1
Glyma.12G150700 Glycine max HOM05D007573 ORTHO05D009938 6.3e-17 90.1 61 72.1
Glyma.06G246700 Glycine max HOM05D007573 ORTHO05D009938 1.1e-16 89.4 61 68.9
COL.COLO4_09423 Corchorus olitorius HOM05D007573 ORTHO05D009938 1.8e-16 88.6 53 79.2
Dinv04316 Davidia involucrata HOM05D007573 ORTHO05D009938 5.3e-16 87.0 61 72.1
Cpa.g.sc80.44 Carica papaya HOM05D007573 ORTHO05D009938 9.0e-16 86.3 56 71.4
Dinv08308 Davidia involucrata HOM05D007573 ORTHO05D009938 9.0e-16 86.3 54 74.1
MD00G1089500 Malus domestica HOM05D007573 ORTHO05D009938 1.2e-15 85.9 61 68.9
Medtr8g043400 Medicago truncatula HOM05D007573 ORTHO05D009938 1.2e-15 85.9 61 68.9
Sed0027924 Sechium edule HOM05D007573 ORTHO05D009938 1.2e-15 85.9 55 76.4
Lj3g0024326 Lotus japonicus HOM05D007573 ORTHO05D009938 2.6e-15 84.7 52 82.7
Phvul.011G213100 Phaseolus vulgaris HOM05D007573 ORTHO05D009938 2.6e-15 84.7 61 67.2
Gorai.002G072400 Gossypium raimondii HOM05D007573 ORTHO05D009938 3.4e-15 84.3 56 69.6
AL230U10020 Arabidopsis lyrata HOM05D007573 ORTHO05D013670 4.5e-15 84.0 56 67.9
Haze_09458 Corylus avellana HOM05D007573 ORTHO05D009938 4.5e-15 84.0 53 75.5
Gohir.A01G065200 Gossypium hirsutum HOM05D007573 ORTHO05D009938 5.9e-15 83.6 53 71.7
VMungo1383G0060 Vigna mungo HOM05D007573 ORTHO05D009938 7.7e-15 83.2 61 65.6
CiPaw.12G120200 Carya illinoinensis HOM05D007573 ORTHO05D009938 1.3e-14 82.4 56 67.9
Thecc.07G080300 Theobroma cacao HOM05D007573 ORTHO05D009938 1.3e-14 82.4 53 71.7
Atru.chr2.2713 Acer truncatum HOM05D007573 ORTHO05D009938 1.7e-14 82.0 53 75.5
CiPaw.08G146300 Carya illinoinensis HOM05D007573 ORTHO05D009938 1.7e-14 82.0 57 68.4
Ciclev10010140m.g Citrus clementina HOM05D007573 ORTHO05D009938 1.7e-14 82.0 56 71.4
Lalb_Chr03g0030571 Lupinus albus HOM05D007573 ORTHO05D009938 1.7e-14 82.0 59 66.1
C05p51770 Brassica napus HOM05D007573 ORTHO05D009938 2.2e-14 81.6 57 63.2
BolC5t33863H Brassica oleracea HOM05D007573 ORTHO05D009938 2.2e-14 81.6 57 63.2
Hma1.2p1_0540F.1_g174720 Hydrangea macrophylla HOM05D007573 ORTHO05D009938 2.2e-14 81.6 59 66.1
Hma1.2p1_0540F.1_g174725 Hydrangea macrophylla HOM05D007573 ORTHO05D009938 2.2e-14 81.6 59 66.1
Lalb_Chr19g0134301 Lupinus albus HOM05D007573 ORTHO05D009938 2.2e-14 81.6 61 65.6
Psat4g143240 Pisum sativum HOM05D007573 ORTHO05D009938 2.9e-14 81.3 51 74.5
Aa31LG8G2630 Aethionema arabicum HOM05D007573 ORTHO05D009938 3.8e-14 80.9 59 66.1
AL3G27940 Arabidopsis lyrata HOM05D007573 ORTHO05D009938 3.8e-14 80.9 53 69.8
AT3G15395 Arabidopsis thaliana HOM05D007573 ORTHO05D009938 3.8e-14 80.9 53 69.8
CSS0004701 Camellia sinensis var. sinensis HOM05D007573 ORTHO05D009938 3.8e-14 80.9 55 70.9
Duzib213G0732 Durio zibethinus HOM05D007573 ORTHO05D009938 3.8e-14 80.9 61 67.2
Potri.001G402000 Populus trichocarpa HOM05D007573 ORTHO05D009938 3.8e-14 80.9 55 69.1
TWI77G0001 Tripterygium wilfordii HOM05D007573 ORTHO05D009938 3.8e-14 80.9 51 76.5
ClCG10G006860 Citrullus lanatus HOM05D007573 ORTHO05D009938 5.0e-14 80.5 59 67.8
CARHR090450 Cardamine hirsuta HOM05D007573 ORTHO05D009938 6.5e-14 80.1 53 67.9
THA.LOC104810481 Tarenaya hassleriana HOM05D007573 ORTHO05D009938 8.5e-14 79.7 58 63.8
TWI39G0607 Tripterygium wilfordii HOM05D007573 ORTHO05D009938 1.4e-13 79.0 57 66.7
TAR626G0043 Trochodendron aralioides HOM05D007573 ORTHO05D009938 1.9e-13 78.6 59 64.4
Thhalv10021902m.g Eutrema salsugineum HOM05D007573 ORTHO05D009938 2.5e-13 78.2 53 67.9
Carub.0003s1512 Capsella rubella HOM05D007573 ORTHO05D009938 3.2e-13 77.8 53 67.9
BcaB06g29571 Brassica carinata HOM05D007573 ORTHO05D009938 4.2e-13 77.4 56 60.7
Nn8g41073 Nelumbo nucifera HOM05D007573 ORTHO05D009938 4.2e-13 77.4 51 68.6
A03p39300 Brassica napus HOM05D007573 ORTHO05D009938 5.5e-13 77.0 53 66.0
C03p47670 Brassica napus HOM05D007573 ORTHO05D009938 5.5e-13 77.0 53 66.0
BraA03t13080Z Brassica rapa HOM05D003356 ORTHO05D004362 5.5e-13 77.0 53 66.0
HPP92_024073 Vanilla planifolia HOM05D007573 ORTHO05D009938 5.5e-13 77.0 51 66.7
Os02g0197400 Oryza sativa ssp. japonica HOM05D007573 ORTHO05D009938 3.6e-12 74.3 51 62.7
Cc06_g21640 Coffea canephora HOM05D007573 ORTHO05D009938 4.6e-12 73.9 58 62.1
CsaV3_3G006210 Cucumis sativus L. HOM05D007573 ORTHO05D009938 6.1e-12 73.6 61 60.7
MELO3C016521.2 Cucumis melo HOM05D007573 ORTHO05D009938 7.9e-12 73.2 61 60.7
Hund27723 Selenicereus undatus HOM05D007573 ORTHO05D009938 7.9e-12 73.2 57 64.9
Hund27736 Selenicereus undatus HOM05D007573 ORTHO05D009938 7.9e-12 73.2 57 64.9
ATR0751G258 Amborella trichopoda HOM05D007573 ORTHO05D009938 1.4e-11 72.4 59 55.9
PSO017G6785 Papaver somniferum HOM05D007573 ORTHO05D009938 1.4e-11 72.4 58 60.3
PGR031G1039 Punica granatum HOM05D007573 ORTHO05D009938 1.4e-11 72.4 53 66.0
MSTRG.15220 Avicennia marina HOM05D007573 ORTHO05D009938 2.3e-11 71.6 50 66.0
CDE03G0215 Ceratophyllum demersum HOM05D001610 ORTHO05D001585 3.9e-11 70.9 52 61.5
BcaC01g03875 Brassica carinata HOM05D007573 ORTHO05D009938 8.8e-11 69.7 61 57.4
C07p18110 Brassica napus HOM05D003404 ORTHO05D009938 1.1e-10 69.3 43 69.8
Nitab4.5_0003688g0030 Nicotiana tabacum HOM05D007573 ORTHO05D009938 1.1e-10 69.3 59 55.9
Nitab4.5_0003769g0010 Nicotiana tabacum HOM05D007573 ORTHO05D009938 1.1e-10 69.3 59 55.9
Lsat_1_v5_gn_7_105220 Lactuca sativa HOM05D007573 ORTHO05D009938 2.0e-10 68.6 41 78.0
Solyc07g063250.3 Solanum lycopersicum HOM05D007573 ORTHO05D009938 7.4e-10 66.6 59 54.2
Aqoxy7G03752 Aquilegia oxysepala HOM05D007573 ORTHO05D009938 1.3e-09 65.9 59 59.3
Peaxi162Scf00069g01326 Petunia axillaris HOM05D007573 ORTHO05D009938 1.3e-09 65.9 46 60.9
MD03G1224700 Malus domestica HOM05D007573 ORTHO05D009938 2.8e-09 64.7 44 70.5
EL10Ac3g05359 Beta vulgaris HOM05D007573 ORTHO05D009938 3.7e-09 64.3 55 54.5
MBI15_g18737_MAGBIO Magnolia biondii HOM05D007573 ORTHO05D009938 1.4e-08 62.4 45 60.0
Migut.M00851 Erythranthe guttata HOM05D007573 ORTHO05D009938 1.2e-07 59.3 54 50.0
SHI14860 Sapria himalayana HOM05D007573 ORTHO05D009938 1.2e-07 59.3 43 55.8
Potri.006G225232 Populus trichocarpa HOM05D007573 ORTHO05D009938 2.0e-07 58.5 61 54.1
Actinidia09676 Actinidia chinensis HOM05D007573 ORTHO05D009938 1.0e-06 56.2 43 60.5


User provided reference genes

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