Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G1493 Fragaria x ananassa HOM05D005835 ORTHO05D007187 2.5e-98 362.1 182 100.0
FAN13G2021 Fragaria x ananassa HOM05D005835 ORTHO05D007187 5.5e-93 344.4 182 95.1
FvH4_5g00490 Fragaria vesca HOM05D005835 ORTHO05D007187 9.4e-93 343.6 182 95.6
FAN18G1180 Fragaria x ananassa HOM05D005835 ORTHO05D007187 9.4e-93 343.6 182 95.6
FAN08G1980 Fragaria x ananassa HOM05D005835 ORTHO05D007187 2.7e-92 342.0 182 94.5
RcHm_v2.0_Chr7g0202021 Rosa chinensis HOM05D005835 ORTHO05D007187 5.2e-67 258.1 182 73.6
Prupe.4G260700 Prunus persica HOM05D005835 ORTHO05D007187 1.5e-61 240.0 182 66.5
MD04G1080500 Malus domestica HOM05D005835 ORTHO05D007187 1.1e-56 223.8 182 64.8
Haze_08597 Corylus avellana HOM05D005835 ORTHO05D007187 9.2e-56 220.7 183 63.4
Hma1.2p1_2131F.1_g314730 Hydrangea macrophylla HOM05D005835 ORTHO05D007187 1.1e-53 213.8 183 60.7
TAR374G0447 Trochodendron aralioides HOM05D005835 ORTHO05D007187 1.1e-53 213.8 180 63.3
Dinv39089 Davidia involucrata HOM05D005835 ORTHO05D007187 7.3e-53 211.1 175 62.9
Oeu040228.1 Olea europaea HOM05D005835 ORTHO05D007187 2.8e-52 209.1 183 60.7
TAR375G0176 Trochodendron aralioides HOM05D005835 ORTHO05D007187 3.6e-52 208.8 173 63.6
Nn1g01126 Nelumbo nucifera HOM05D005835 ORTHO05D007187 8.0e-52 207.6 179 60.9
Dinv21579 Davidia involucrata HOM05D005835 ORTHO05D007187 3.1e-51 205.7 176 61.9
Nn1g01130 Nelumbo nucifera HOM05D005835 ORTHO05D007187 3.1e-51 205.7 179 60.3
Atru.chr9.1404 Acer truncatum HOM05D005835 ORTHO05D007187 5.2e-51 204.9 180 58.9
CsaV3_3G003110 Cucumis sativus L. HOM05D005835 ORTHO05D007187 1.5e-50 203.4 183 57.4
Nitab4.5_0005535g0030 Nicotiana tabacum HOM05D005835 ORTHO05D007187 5.8e-50 201.4 183 57.9
CiPaw.12G105500 Carya illinoinensis HOM05D005835 ORTHO05D007187 9.8e-50 200.7 182 58.2
Eucgr.E01477 Eucalyptus grandis HOM05D005835 ORTHO05D007187 1.3e-49 200.3 181 59.1
Potri.001G118700 Populus trichocarpa HOM05D005835 ORTHO05D007187 1.3e-49 200.3 182 57.1
TWI81G0081 Tripterygium wilfordii HOM05D005835 ORTHO05D007187 1.3e-49 200.3 181 54.1
MELO3C013977.2 Cucumis melo HOM05D005835 ORTHO05D007187 1.7e-49 199.9 183 56.8
ClCG10G003070 Citrullus lanatus HOM05D005835 ORTHO05D007187 2.2e-49 199.5 183 57.9
Manes.01G074300 Manihot esculenta HOM05D005835 ORTHO05D007187 1.4e-48 196.8 177 58.2
Nitab4.5_0005230g0060 Nicotiana tabacum HOM05D005835 ORTHO05D007187 2.4e-48 196.1 183 55.7
Cpa.g.sc29.103 Carica papaya HOM05D005835 ORTHO05D007187 3.2e-48 195.7 182 53.8
Cfa012808 Carpinus fangiana HOM05D005835 ORTHO05D007187 4.1e-48 195.3 179 58.7
SalBow6G1585 Salvia bowleyana HOM05D005835 ORTHO05D007187 7.0e-48 194.5 178 57.9
Sc02g0009280 Simmondsia chinensis HOM05D005835 ORTHO05D007187 9.2e-48 194.1 178 56.7
MBI04_g35668_MAGBIO Magnolia biondii HOM05D005835 ORTHO05D007187 1.6e-47 193.4 179 59.2
MSTRG.12070 Avicennia marina HOM05D005835 ORTHO05D007187 1.0e-46 190.7 180 58.3
Sed0018910 Sechium edule HOM05D005835 ORTHO05D007187 2.3e-46 189.5 183 55.7
CAN.G1528.1 Capsicum annuum HOM05D005835 ORTHO05D007187 3.0e-46 189.1 179 54.2
Sopen11g025020 Solanum pennellii HOM05D005835 ORTHO05D007187 1.1e-45 187.2 183 55.7
PGSC0003DMG400029987 Solanum tuberosum HOM05D005835 ORTHO05D007187 1.1e-45 187.2 183 55.2
Rhsim07G0102800 Rhododendron simsii HOM05D005835 ORTHO05D007187 1.5e-45 186.8 171 57.3
Ciclev10022502m.g Citrus clementina HOM05D005835 ORTHO05D007187 2.5e-45 186.0 182 54.9
Migut.A00868 Erythranthe guttata HOM05D005835 ORTHO05D007187 2.5e-45 186.0 186 58.6
CiPaw.11G149200 Carya illinoinensis HOM05D005835 ORTHO05D007187 3.3e-45 185.7 177 55.9
Sabra03G0079300 Salix brachista HOM05D005835 ORTHO05D007187 3.3e-45 185.7 182 53.3
SGA_v2.0_scaffold146G36171 Striga asiatica HOM05D005835 ORTHO05D007187 4.3e-45 185.3 179 56.4
CANSAT21G1576 Cannabis sativa HOM05D005835 ORTHO05D007187 5.6e-45 184.9 179 55.9
Solyc11g065270.2 Solanum lycopersicum HOM05D005835 ORTHO05D007187 5.6e-45 184.9 183 55.2
DCAR_000844 Daucus carota HOM05D004805 ORTHO05D007187 9.5e-45 184.1 182 53.8
Migut.A00824 Erythranthe guttata HOM05D005835 ORTHO05D007187 9.5e-45 184.1 186 58.1
Sabra01G0091600 Salix brachista HOM05D005835 ORTHO05D007187 3.6e-44 182.2 182 54.4
Potri.003G114200 Populus trichocarpa HOM05D005835 ORTHO05D007187 4.7e-44 181.8 182 52.2
Duzib068G0435 Durio zibethinus HOM05D005835 ORTHO05D007187 8.1e-44 181.0 182 52.2
Peaxi162Scf00004g03718 Petunia axillaris HOM05D005835 ORTHO05D007187 4.0e-43 178.7 175 53.1
Cc08_g13120 Coffea canephora HOM05D005835 ORTHO05D007187 5.2e-43 178.3 180 54.4
Duzib205G1381 Durio zibethinus HOM05D005835 ORTHO05D007187 6.8e-43 177.9 180 50.0
SGA_v2.0_scaffold120G32837 Striga asiatica HOM05D005835 ORTHO05D007187 2.0e-42 176.4 183 54.6
Manes.02G034200 Manihot esculenta HOM05D005835 ORTHO05D007187 4.4e-42 175.3 177 53.1
Aqoxy7G00679 Aquilegia oxysepala HOM05D005835 ORTHO05D007187 5.8e-42 174.9 176 55.7
EL10Ac4g07900 Beta vulgaris HOM05D005835 ORTHO05D007187 6.4e-41 171.4 174 51.7
AUR62025857 Chenopodium quinoa HOM05D005835 ORTHO05D007187 1.4e-40 170.2 173 52.6
PGR031G1343 Punica granatum HOM05D005835 ORTHO05D007187 1.4e-40 170.2 182 52.7
QL03p017823 Quercus lobata HOM05D005835 ORTHO05D007187 1.4e-40 170.2 182 51.1
AUR62029858 Chenopodium quinoa HOM05D005835 ORTHO05D007187 1.9e-40 169.9 173 52.6
QL93p2009_0035 Quercus lobata HOM05D005835 ORTHO05D007187 1.9e-40 169.9 182 51.1
Hund02098 Selenicereus undatus HOM05D005835 ORTHO05D007187 1.9e-40 169.9 172 50.0
Lalb_Chr05g0225471 Lupinus albus HOM05D005835 ORTHO05D007187 7.1e-40 167.9 171 52.6
Gohir.D03G159700 Gossypium hirsutum HOM05D005835 ORTHO05D007187 1.2e-39 167.2 182 48.9
Sc16g0006190 Simmondsia chinensis HOM05D005835 ORTHO05D007187 1.2e-39 167.2 175 49.1
Ah.01g013950 Amaranthus hybridus HOM05D005835 ORTHO05D007187 2.1e-39 166.4 169 52.7
arahy.Tifrunner.gnm1.ann1.7G3HX4 Arachis hypogaea HOM05D005835 ORTHO05D007187 2.1e-39 166.4 171 52.6
Lalb_Chr16g0389651 Lupinus albus HOM05D005835 ORTHO05D007187 2.1e-39 166.4 171 52.6
CDE02G0720 Ceratophyllum demersum HOM05D005835 ORTHO05D007187 4.6e-39 165.2 182 51.1
ECA233G2089 Erigeron canadensis HOM05D005835 ORTHO05D007187 6.0e-39 164.9 177 53.7
Thecc.03G259800 Theobroma cacao HOM05D005835 ORTHO05D007187 6.0e-39 164.9 182 49.5
Aa31LG9G10270 Aethionema arabicum HOM05D005835 ORTHO05D007187 3.9e-38 162.2 184 50.5
Gorai.003G168000 Gossypium raimondii HOM05D005835 ORTHO05D007187 8.6e-38 161.0 182 47.8
arahy.Tifrunner.gnm1.ann1.4SJ6CH Arachis hypogaea HOM05D005835 ORTHO05D007187 2.5e-37 159.5 166 51.8
Gohir.A03G013800 Gossypium hirsutum HOM05D005835 ORTHO05D007187 3.3e-37 159.1 182 47.3
COL.COLO4_23892 Corchorus olitorius HOM05D005835 ORTHO05D007187 4.3e-37 158.7 182 47.8
Duzib084G0572 Durio zibethinus HOM05D005835 ORTHO05D007187 5.6e-37 158.3 180 48.9
Gohir.A12G220500 Gossypium hirsutum HOM05D005835 ORTHO05D007187 5.6e-37 158.3 183 47.5
CDE04G3390 Ceratophyllum demersum HOM05D005835 ORTHO05D007187 1.2e-36 157.1 180 50.6
Gohir.D12G222800 Gossypium hirsutum HOM05D005835 ORTHO05D007187 2.1e-36 156.4 183 47.5
Gorai.008G238900 Gossypium raimondii HOM05D005835 ORTHO05D007187 2.1e-36 156.4 183 47.5
QL12p014300 Quercus lobata HOM05D005835 ORTHO05D007187 2.1e-36 156.4 173 48.6
Psat0s1988g0040 Pisum sativum HOM05D005835 ORTHO05D007187 6.2e-36 154.8 172 50.0
Medtr4g102330 Medicago truncatula HOM05D005835 ORTHO05D007187 8.1e-36 154.5 172 50.0
HanXRQChr02g0049681 Helianthus annuus HOM05D005835 ORTHO05D007187 3.1e-35 152.5 180 48.9
Ca_12275_v3 Cicer arietinum L. HOM05D005835 ORTHO05D007187 4.0e-35 152.1 172 49.4
PSO782G1790 Papaver somniferum HOM05D005835 ORTHO05D007187 4.0e-35 152.1 189 50.3
AL6G47200 Arabidopsis lyrata HOM05D005835 ORTHO05D007187 8.9e-35 151.0 182 47.3
HPP92_005292 Vanilla planifolia HOM05D005835 ORTHO05D007187 8.9e-35 151.0 177 50.8
Phvul.003G214325 Phaseolus vulgaris HOM05D005835 ORTHO05D007187 2.0e-34 149.8 171 47.4
TPR.G37587 Trifolium pratense HOM05D005835 ORTHO05D007187 2.0e-34 149.8 172 50.0
Sp6g05250 Schrenkiella parvula HOM05D005835 ORTHO05D007187 9.9e-34 147.5 178 44.9
HanXRQChr13g0394681 Helianthus annuus HOM05D005835 ORTHO05D007187 2.2e-33 146.4 180 48.9
PSO478G0096 Papaver somniferum HOM05D005835 ORTHO05D007187 6.4e-33 144.8 192 49.0
TWI15G0429 Tripterygium wilfordii HOM05D005835 ORTHO05D007187 2.4e-32 142.9 118 58.5
VMungo1215G0693 Vigna mungo HOM05D005835 ORTHO05D007187 3.2e-32 142.5 171 47.4
Glyma.05G051800 Glycine max HOM05D005835 ORTHO05D007187 4.1e-32 142.1 174 47.1
AT4G12340 Arabidopsis thaliana HOM05D005835 ORTHO05D007187 7.1e-32 141.4 182 45.6
Carub.0006s3148 Capsella rubella HOM05D005835 ORTHO05D007187 7.1e-32 141.4 182 43.4
Os05g0103500 Oryza sativa ssp. japonica HOM05D005835 ORTHO05D007187 1.6e-31 140.2 178 44.9
ATR0115G012 Amborella trichopoda HOM05D005835 ORTHO05D007187 2.1e-31 139.8 179 46.4
CARHR253910 Cardamine hirsuta HOM05D005835 ORTHO05D007187 1.7e-30 136.7 177 43.5
SHI20590 Sapria himalayana HOM05D005835 ORTHO05D007187 1.7e-30 136.7 180 45.0
C02p40850 Brassica napus HOM05D005835 ORTHO05D007187 5.1e-30 135.2 178 42.1
BcaC03g16290 Brassica carinata HOM05D005835 ORTHO05D007187 6.6e-30 134.8 178 42.1
BolC2t10102H Brassica oleracea HOM05D005835 ORTHO05D007187 6.6e-30 134.8 178 42.1
THA.LOC104813805 Tarenaya hassleriana HOM05D005835 ORTHO05D007187 6.6e-30 134.8 182 44.5
BraA02t07561Z Brassica rapa HOM05D005835 ORTHO05D007187 9.6e-29 131.0 178 41.0
GSVIVG01004287001 Vitis vinifera HOM05D005835 ORTHO05D007187 2.1e-28 129.8 178 45.5
BcaB05g23754 Brassica carinata HOM05D005835 ORTHO05D007187 2.8e-28 129.4 178 41.6
A02p25690 Brassica napus HOM05D005835 ORTHO05D007187 2.8e-28 129.4 178 40.4
C09p34190 Brassica napus HOM05D005835 ORTHO05D007187 2.8e-28 129.4 183 43.2
BolC9t56264H Brassica oleracea HOM05D005835 ORTHO05D007187 2.8e-28 129.4 183 43.2
THA.LOC104806344 Tarenaya hassleriana HOM05D005835 ORTHO05D007187 2.8e-28 129.4 180 44.4
GSVIVG01007420001 Vitis vinifera HOM05D005835 ORTHO05D007187 6.2e-28 128.3 177 45.2
CSS0045584 Camellia sinensis var. sinensis HOM05D005835 ORTHO05D007187 8.1e-28 127.9 154 46.8
CSS0008349 Camellia sinensis var. sinensis HOM05D005835 ORTHO05D007187 1.4e-27 127.1 172 45.9
BcaB01g01732 Brassica carinata HOM05D005835 ORTHO05D007187 2.4e-27 126.3 177 40.7
BcaC04g21221 Brassica carinata HOM05D005835 ORTHO05D007187 6.9e-27 124.8 176 42.6
Thhalv10029018m.g Eutrema salsugineum HOM05D005835 ORTHO05D007187 6.9e-27 124.8 178 40.4
A09p26960 Brassica napus HOM05D005835 ORTHO05D007187 3.4e-26 122.5 182 39.6
BraA09t38266Z Brassica rapa HOM05D005835 ORTHO05D007187 3.4e-26 122.5 182 39.6
Zm00001eb356210 Zea mays HOM05D005835 ORTHO05D007187 1.4e-24 117.1 174 42.5
Actinidia05173 Actinidia chinensis HOM05D005835 ORTHO05D000538 6.0e-23 111.7 114 53.5
Lsat_1_v5_gn_6_4381 Lactuca sativa HOM05D005835 ORTHO05D007187 5.1e-22 108.6 173 41.0
CARHR253930 Cardamine hirsuta HOM05D005835 ORTHO05D007187 9.6e-21 104.4 112 48.2
SEGI_03973 Sequoiadendron giganteum HOM05D005835 ORTHO05D007187 2.4e-19 99.8 183 41.0
Mapoly0001s0295 Marchantia polymorpha HOM05D005835 ORTHO05D007187 8.1e-12 74.7 187 28.3
Pp3c15_5650 Physcomitrium patens HOM05D005835 ORTHO05D007187 8.4e-09 64.7 182 31.9
CBR_g50926 Chara braunii HOM05D005835 ORTHO05D007187 1.0e-06 57.8 213 26.3


User provided reference genes

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