Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G1490 Fragaria x ananassa HOM05D004519 ORTHO05D006283 1.5e-253 879.0 453 100.0
FAN18G3814 Fragaria x ananassa HOM05D004519 ORTHO05D006283 2.6e-245 851.7 459 95.6
FvH4_5g23060 Fragaria vesca HOM05D004519 ORTHO05D006283 5.9e-245 850.5 464 94.8
FAN18G1908 Fragaria x ananassa HOM05D004519 ORTHO05D006283 3.6e-242 841.3 471 93.0
FAN13G3061 Fragaria x ananassa HOM05D004519 ORTHO05D006283 1.4e-233 812.8 464 92.0
RcHm_v2.0_Chr7g0211781 Rosa chinensis HOM05D004519 ORTHO05D006283 1.2e-232 809.7 460 91.3
MD06G1026700 Malus domestica HOM05D004519 ORTHO05D006283 4.4e-200 701.4 457 78.3
FAN08G3243 Fragaria x ananassa HOM05D004519 ORTHO05D006283 4.6e-197 691.4 408 89.7
MD16G1279400 Malus domestica HOM05D004519 ORTHO05D006283 4.6e-197 691.4 458 77.5
Ciclev10001047m.g Citrus clementina HOM05D004519 ORTHO05D006283 2.0e-184 649.4 469 69.9
Prupe.5G027200 Prunus persica HOM05D004519 ORTHO05D006283 1.3e-183 646.7 466 74.5
GSVIVG01013060001 Vitis vinifera HOM05D004519 ORTHO05D006283 2.2e-183 646.0 447 73.6
Dinv29004 Davidia involucrata HOM05D004519 ORTHO05D006283 4.9e-183 644.8 451 70.3
Cfa012505 Carpinus fangiana HOM05D004519 ORTHO05D006283 1.7e-180 636.3 459 72.5
Hma1.2p1_1569F.1_g291200 Hydrangea macrophylla HOM05D004519 ORTHO05D006283 2.1e-178 629.4 453 70.0
CiPaw.11G098500 Carya illinoinensis HOM05D004519 ORTHO05D006283 7.6e-176 620.9 452 69.7
Dinv25262 Davidia involucrata HOM05D004519 ORTHO05D006283 4.9e-175 618.2 392 74.5
CSS0024637 Camellia sinensis var. sinensis HOM05D004519 ORTHO05D006283 3.2e-174 615.5 455 67.5
CiPaw.12G068400 Carya illinoinensis HOM05D004519 ORTHO05D006283 4.2e-174 615.1 393 75.6
Potri.001G136600 Populus trichocarpa HOM05D004519 ORTHO05D006283 5.1e-172 608.2 443 68.4
PGR042G1943 Punica granatum HOM05D004519 ORTHO05D006283 6.6e-172 607.8 444 66.4
CANSAT01G0127 Cannabis sativa HOM05D004519 ORTHO05D006283 4.3e-171 605.1 365 79.7
Nn3g19385 Nelumbo nucifera HOM05D004519 ORTHO05D006283 4.3e-171 605.1 456 66.0
Aqoxy3G02176 Aquilegia oxysepala HOM05D004519 ORTHO05D006283 6.9e-169 597.8 456 66.7
CsaV3_3G048840 Cucumis sativus L. HOM05D004519 ORTHO05D006283 9.0e-169 597.4 423 69.3
Manes.17G018849 Manihot esculenta HOM05D004519 ORTHO05D006283 9.0e-169 597.4 444 66.2
Gorai.004G182200 Gossypium raimondii HOM05D004519 ORTHO05D006283 1.5e-168 596.7 431 68.0
TAR629G2035 Trochodendron aralioides HOM05D004519 ORTHO05D006283 2.0e-168 596.3 466 65.2
Sc01g0007150 Simmondsia chinensis HOM05D004519 ORTHO05D006283 7.6e-168 594.3 418 69.4
Gorai.007G033500 Gossypium raimondii HOM05D004519 ORTHO05D006283 9.9e-168 594.0 448 67.2
MELO3C003440.2 Cucumis melo HOM05D004519 ORTHO05D006283 2.9e-167 592.4 394 71.6
Nn1g00218 Nelumbo nucifera HOM05D004519 ORTHO05D006283 1.9e-166 589.7 420 69.0
Oeu027094.2 Olea europaea HOM05D004519 ORTHO05D006283 1.9e-166 589.7 443 66.6
PSO063G4347 Papaver somniferum HOM05D004519 ORTHO05D006283 3.2e-166 589.0 462 64.3
PSO782G3212 Papaver somniferum HOM05D004519 ORTHO05D006283 3.2e-166 589.0 462 64.5
Gohir.A11G028600 Gossypium hirsutum HOM05D004519 ORTHO05D006283 2.1e-165 586.3 392 72.7
Duzib205G0301 Durio zibethinus HOM05D004519 ORTHO05D006283 3.5e-165 585.5 411 69.6
Gohir.D11G030600 Gossypium hirsutum HOM05D004519 ORTHO05D006283 1.8e-164 583.2 392 71.7
Eucgr.E00228 Eucalyptus grandis HOM05D004519 ORTHO05D006283 3.0e-164 582.4 397 69.3
Sed0022223 Sechium edule HOM05D004519 ORTHO05D006283 3.9e-164 582.0 453 65.3
THA.LOC104812759 Tarenaya hassleriana HOM05D004519 ORTHO05D006283 4.3e-163 578.6 402 69.7
Aa31LG2G13810 Aethionema arabicum HOM05D004519 ORTHO05D006283 7.4e-163 577.8 421 67.0
ClCG09G011630 Citrullus lanatus HOM05D004519 ORTHO05D006283 7.4e-163 577.8 480 62.5
Thhalv10007540m.g Eutrema salsugineum HOM05D004519 ORTHO05D006283 1.6e-162 576.6 426 65.0
THA.LOC104814413 Tarenaya hassleriana HOM05D004519 ORTHO05D006283 2.8e-162 575.9 463 63.5
Carub.0001s3053 Capsella rubella HOM05D004519 ORTHO05D006283 3.7e-162 575.5 465 61.5
CAN.G726.25 Capsicum annuum HOM05D004519 ORTHO05D006283 3.7e-162 575.5 463 62.6
Lj4g0001331 Lotus japonicus HOM05D004519 ORTHO05D006283 3.7e-162 575.5 380 72.6
Psat2g139000 Pisum sativum HOM05D004519 ORTHO05D006283 8.1e-162 574.3 439 65.4
AT1G32200 Arabidopsis thaliana HOM05D004519 ORTHO05D006283 1.1e-161 573.9 461 62.0
Lalb_Chr09g0325481 Lupinus albus HOM05D004519 ORTHO05D006283 1.1e-161 573.9 451 66.1
AL1G46330 Arabidopsis lyrata HOM05D004519 ORTHO05D006283 2.4e-161 572.8 461 62.0
BcaC05g27905 Brassica carinata HOM05D004519 ORTHO05D006283 3.1e-161 572.4 444 64.0
HanXRQChr03g0083251 Helianthus annuus HOM05D004519 ORTHO05D006283 6.9e-161 571.2 451 64.5
Glyma.09G207900 Glycine max HOM05D004519 ORTHO05D006283 9.0e-161 570.9 364 73.9
Lalb_Chr16g0381061 Lupinus albus HOM05D004519 ORTHO05D006283 9.0e-161 570.9 367 73.6
Sp1g27880 Schrenkiella parvula HOM05D004519 ORTHO05D006283 3.4e-160 568.9 405 66.7
Nitab4.5_0000529g0120 Nicotiana tabacum HOM05D004519 ORTHO05D006283 4.5e-160 568.5 454 62.3
Sabra01G0105700 Salix brachista HOM05D004519 ORTHO05D006283 7.6e-160 567.8 462 62.8
A05p25130 Brassica napus HOM05D004519 ORTHO05D006283 9.9e-160 567.4 441 63.7
BraA05t21393Z Brassica rapa HOM05D004519 ORTHO05D006283 9.9e-160 567.4 441 63.7
Glyma.01G014200 Glycine max HOM05D004519 ORTHO05D006283 9.9e-160 567.4 453 63.8
Solyc08g076470.4 Solanum lycopersicum HOM05D004519 ORTHO05D006283 9.9e-160 567.4 403 66.3
CARHR031570 Cardamine hirsuta HOM05D004519 ORTHO05D006283 2.2e-159 566.2 429 65.3
VMungo1215G0394 Vigna mungo HOM05D004519 ORTHO05D006283 2.2e-159 566.2 364 72.8
BcaB07g32892 Brassica carinata HOM05D004519 ORTHO05D006283 2.9e-159 565.8 447 62.2
Sopen08g025050 Solanum pennellii HOM05D004519 ORTHO05D006283 3.8e-159 565.5 403 66.3
MBI04_g32203_MAGBIO Magnolia biondii HOM05D004519 ORTHO05D006283 4.9e-159 565.1 482 59.1
C05p31600 Brassica napus HOM05D004519 ORTHO05D006283 8.4e-159 564.3 393 67.4
BolC5t31883H Brassica oleracea HOM05D004519 ORTHO05D006283 8.4e-159 564.3 393 67.4
Medtr5g029230 Medicago truncatula HOM05D004519 ORTHO05D006283 1.1e-158 563.9 364 72.8
BcaB03g13753 Brassica carinata HOM05D004519 ORTHO05D006283 1.4e-158 563.5 453 62.5
Gohir.A03G000032 Gossypium hirsutum HOM05D004519 ORTHO05D006283 1.4e-158 563.5 420 65.5
BcaC05g27251 Brassica carinata HOM05D004519 ORTHO05D006283 3.2e-158 562.4 393 67.2
Cc08_g03490 Coffea canephora HOM05D004519 ORTHO05D006283 5.5e-158 561.6 369 72.9
Migut.E00743 Erythranthe guttata HOM05D004519 ORTHO05D006283 5.5e-158 561.6 454 62.3
Gorai.003G185500 Gossypium raimondii HOM05D004519 ORTHO05D006283 7.1e-158 561.2 420 65.2
TPR.G19434 Trifolium pratense HOM05D004519 ORTHO05D006283 7.1e-158 561.2 456 62.7
Phvul.002G136600 Phaseolus vulgaris HOM05D004519 ORTHO05D006283 9.3e-158 560.8 364 71.7
A09p34000 Brassica napus HOM05D004519 ORTHO05D006283 1.2e-157 560.5 399 66.7
CSS0001538 Camellia sinensis var. sinensis HOM05D004519 ORTHO05D006283 2.7e-157 559.3 331 77.6
HanXRQChr13g0414231 Helianthus annuus HOM05D004519 ORTHO05D006283 4.6e-157 558.5 444 63.7
QL12p001672 Quercus lobata HOM05D004519 ORTHO05D006283 6.0e-157 558.1 530 55.1
SGA_v2.0_scaffold198G41070 Striga asiatica HOM05D004519 ORTHO05D006283 6.0e-157 558.1 480 59.4
MSTRG.24848 Avicennia marina HOM05D004519 ORTHO05D006283 2.3e-156 556.2 449 62.8
Ca_25177_v3 Cicer arietinum L. HOM05D004519 ORTHO05D006283 5.1e-156 555.1 356 73.0
BolC8t47999H Brassica oleracea HOM05D004519 ORTHO05D006283 8.7e-156 554.3 451 60.8
BcaC07g37628 Brassica carinata HOM05D004519 ORTHO05D006283 1.9e-155 553.1 451 60.5
BcaB04g17996 Brassica carinata HOM05D004519 ORTHO05D006283 1.6e-154 550.1 450 60.4
Lsat_1_v5_gn_6_80100 Lactuca sativa HOM05D004519 ORTHO05D006283 3.7e-154 548.9 425 63.3
A08p09320 Brassica napus HOM05D004519 ORTHO05D006283 8.2e-154 547.7 451 60.1
BraA08t32930Z Brassica rapa HOM05D004519 ORTHO05D006283 8.2e-154 547.7 451 60.1
ECA240G3299 Erigeron canadensis HOM05D004519 ORTHO05D006283 1.5e-152 543.5 442 62.4
Os10g0577900 Oryza sativa ssp. japonica HOM05D004519 ORTHO05D006283 1.9e-150 536.6 360 68.6
ATR0829G164 Amborella trichopoda HOM05D004519 ORTHO05D006283 7.1e-150 534.6 429 61.3
Thecc.03G310400 Theobroma cacao HOM05D004519 ORTHO05D006283 1.2e-149 533.9 420 63.8
Zm00001eb025080 Zea mays HOM05D004519 ORTHO05D006283 1.0e-148 530.8 360 67.5
Zm00001eb224960 Zea mays HOM05D004519 ORTHO05D006283 1.0e-148 530.8 359 67.4
Lj2A231G41 Lonicera japonica HOM05D004519 ORTHO05D006283 3.3e-147 525.8 482 60.0
vmacro00276 Vaccinium macrocarpon HOM05D004519 ORTHO05D006283 4.3e-147 525.4 327 74.0
CDE12G0245 Ceratophyllum demersum HOM05D004519 ORTHO05D006283 9.7e-147 524.2 429 62.2
C05p39140 Brassica napus HOM05D004519 ORTHO05D006283 1.6e-146 523.5 406 63.8
Duzib068G1409 Durio zibethinus HOM05D004519 ORTHO05D006283 4.8e-146 521.9 420 64.5
Rhsim11G0021900 Rhododendron simsii HOM05D004519 ORTHO05D006283 1.1e-145 520.8 553 51.4
SEGI_02196 Sequoiadendron giganteum HOM05D004519 ORTHO05D006283 2.4e-145 519.6 432 60.6
Gohir.D03G176300 Gossypium hirsutum HOM05D004519 ORTHO05D006283 2.6e-144 516.2 331 71.9
DCAR_008221 Daucus carota HOM05D004519 ORTHO05D006283 3.4e-144 515.8 371 67.9
BraA09t38946Z Brassica rapa HOM05D004519 ORTHO05D006283 2.9e-143 512.7 399 63.4
AUR62018641 Chenopodium quinoa HOM05D004519 ORTHO05D006283 8.5e-143 511.1 353 68.6
arahy.Tifrunner.gnm1.ann1.BI8WMI Arachis hypogaea HOM05D004519 ORTHO05D006283 4.2e-142 508.8 419 62.8
arahy.Tifrunner.gnm1.ann1.D9NVDI Arachis hypogaea HOM05D004519 ORTHO05D006283 4.2e-142 508.8 419 62.8
AUR62007353 Chenopodium quinoa HOM05D004519 ORTHO05D006283 7.2e-142 508.1 427 59.3
Haze_08164 Corylus avellana HOM05D004519 ORTHO05D006283 8.2e-138 494.6 469 60.1
Gohir.D08G174500 Gossypium hirsutum HOM05D004519 ORTHO05D006283 6.9e-137 491.5 365 65.8
Gohir.A08G153600 Gossypium hirsutum HOM05D004519 ORTHO05D006283 1.0e-135 487.6 365 65.5
Mapoly0045s0098 Marchantia polymorpha HOM05D004519 ORTHO05D006283 1.3e-135 487.3 381 59.8
CDE04G2515 Ceratophyllum demersum HOM05D004519 ORTHO05D006283 5.0e-135 485.3 433 58.4
unitig_32.g10899 Utricularia gibba HOM05D004519 ORTHO05D006283 2.0e-131 473.4 400 59.0
Peaxi162Scf00170g00818 Petunia axillaris HOM05D004519 ORTHO05D006283 7.4e-131 471.5 403 58.8
EL10Ac5g12013 Beta vulgaris HOM05D004519 ORTHO05D006283 2.6e-128 463.0 412 56.1
Nitab4.5_0012493g0010 Nicotiana tabacum HOM05D004519 ORTHO05D006283 1.0e-127 461.1 291 71.1
Pp3c7_2970 Physcomitrium patens HOM05D004519 ORTHO05D006283 8.8e-124 448.0 365 55.1
HPP92_020895 Vanilla planifolia HOM05D004519 ORTHO05D006283 9.7e-123 444.5 293 70.6
HanXRQChr06g0172791 Helianthus annuus HOM05D004519 ORTHO05D006283 1.1e-121 441.0 361 60.4
SMO244G0022 Selaginella moellendorffii HOM05D004519 ORTHO05D006283 3.1e-121 439.5 354 58.2
AagrBONN_evm.TU.Sc2ySwM_117.1032 Anthoceros agrestis HOM05D004547 ORTHO05D005133 4.5e-120 435.6 368 57.9
Actinidia01317 Actinidia chinensis HOM05D004519 ORTHO05D006283 1.7e-119 433.7 330 67.0
EL10Ac5g12011 Beta vulgaris HOM05D004519 ORTHO05D006283 2.7e-117 426.4 382 56.0
DCAR_004271 Daucus carota HOM05D004519 ORTHO05D006283 6.1e-109 398.7 246 76.0
CBR_g4494 Chara braunii HOM05D004519 ORTHO05D006283 8.8e-108 394.8 373 51.2
Haze_08160 Corylus avellana HOM05D004519 ORTHO05D006283 2.4e-105 386.7 253 74.3
Eucgr.E01634 Eucalyptus grandis HOM05D004519 ORTHO05D006283 1.0e-103 381.3 249 69.9
Cpa.g.sc208.3 Carica papaya HOM05D004519 ORTHO05D006283 1.7e-103 380.6 217 78.8
Atru.chr6.1525 Acer truncatum HOM05D004519 ORTHO05D006283 2.7e-96 356.7 206 79.6
Cre02.g143000 Chlamydomonas reinhardtii HOM05D004519 ORTHO05D006283 1.5e-78 297.7 349 42.1
Actinidia29340 Actinidia chinensis HOM05D004519 ORTHO05D006283 2.0e-75 287.3 284 55.6
PRCOL_00006772 Prasinoderma coloniale HOM05D004519 ORTHO05D006283 5.4e-65 252.7 311 41.5
MCO03G317 Micromonas commoda HOM05D004519 ORTHO05D006283 2.1e-61 240.7 338 41.4
Hma1.2p1_3246F.1_g334370 Hydrangea macrophylla HOM05D004519 ORTHO05D006283 1.9e-49 201.1 176 58.5
MBI15_g25773_MAGBIO Magnolia biondii HOM05D004519 ORTHO05D006283 1.8e-39 167.9 98 75.5
Cpa.g.sc208.5 Carica papaya HOM05D004519 ORTHO05D006283 5.1e-39 166.4 150 58.7
Eucgr.A01818 Eucalyptus grandis HOM05D004519 ORTHO05D006283 1.4e-33 148.3 106 66.0
HanXRQChr16g0500211 Helianthus annuus HOM05D004519 ORTHO05D006283 1.7e-26 124.8 77 74.0
arahy.Tifrunner.gnm1.ann1.LG4SFI Arachis hypogaea HOM05D000755 ORTHO05D017477 8.2e-21 105.9 108 52.8
Haze_20066 Corylus avellana HOM05D004519 ORTHO05D007437 4.5e-19 100.1 95 53.7
Actinidia01316 Actinidia chinensis HOM05D004519 ORTHO05D006283 1.4e-17 95.1 62 71.0
RcHm_v2.0_Chr5g0062811 Rosa chinensis HOM05D004519 ORTHO05D017048 1.4e-17 95.1 54 85.2
Gohir.D08G117301 Gossypium hirsutum HOM05D004519 ORTHO05D017048 3.2e-17 94.0 55 72.7
Gohir.D11G228750 Gossypium hirsutum HOM05D004519 ORTHO05D017048 3.2e-17 94.0 55 72.7
Gohir.D11G251850 Gossypium hirsutum HOM05D004519 ORTHO05D017048 3.2e-17 94.0 55 72.7
Gohir.D13G135501 Gossypium hirsutum HOM05D004519 ORTHO05D017048 9.4e-17 92.4 55 70.9
PGSC0003DMG401014796 Solanum tuberosum HOM05D004519 ORTHO05D006283 2.7e-16 90.9 93 45.2
Gorai.008G116000 Gossypium raimondii HOM05D004519 ORTHO05D017048 3.6e-16 90.5 54 70.4
COL.COLO4_16939 Corchorus olitorius HOM05D004519 ORTHO05D006283 4.5e-11 73.6 73 57.5
Actinidia29341 Actinidia chinensis HOM05D004519 ORTHO05D052920 2.7e-08 64.3 32 81.2
arahy.Tifrunner.gnm1.ann1.18EICQ Arachis hypogaea HOM05D000755 ORTHO05D017477 2.7e-08 64.3 53 64.2
Gohir.D02G161780 Gossypium hirsutum HOM05D004519 ORTHO05D017048 2.0e-06 58.2 35 68.6
Gohir.D10G176966 Gossypium hirsutum HOM05D004519 ORTHO05D017048 2.0e-06 58.2 35 68.6


User provided reference genes

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